Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 7.7e-43 176.8 92 100.0
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 3.7e-37 157.9 92 90.2
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 9.1e-28 126.7 93 72.0
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 5.0e-26 120.9 90 77.8
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 4.0e-23 111.3 89 71.9
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 3.7e-21 104.8 81 70.4
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 3.7e-21 104.8 92 65.2
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 8.3e-21 103.6 93 63.4
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 4.5e-19 97.8 91 65.9
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 5.9e-19 97.4 97 60.8
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 1.3e-18 96.3 96 55.2
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 2.9e-18 95.1 88 62.5
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 6.5e-18 94.0 81 60.5
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 1.5e-17 92.8 96 52.1
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 7.2e-17 90.5 72 62.5
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 1.6e-16 89.4 98 55.1
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 2.8e-16 88.6 101 49.5
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 3.6e-16 88.2 76 61.8
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 1.0e-15 86.7 80 58.8
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 1.0e-15 86.7 100 51.0
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 1.4e-15 86.3 87 55.2
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 2.3e-15 85.5 94 54.3
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 2.3e-15 85.5 88 59.1
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 4.0e-15 84.7 97 49.5
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 5.2e-15 84.3 103 53.4
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 5.2e-15 84.3 71 59.2
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 6.8e-15 84.0 101 52.5
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 1.5e-14 82.8 95 52.6
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 2.6e-14 82.0 94 52.1
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 4.4e-14 81.3 95 52.6
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 5.7e-14 80.9 95 48.4
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 7.5e-14 80.5 76 56.6
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 9.8e-14 80.1 80 55.0
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 2.2e-13 79.0 79 53.2
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 3.7e-13 78.2 75 58.7
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 6.3e-13 77.4 71 63.4
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 8.3e-13 77.0 92 44.6
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 8.3e-13 77.0 92 44.6
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 8.3e-13 77.0 92 44.6
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 1.1e-12 76.6 95 45.3
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 1.4e-12 76.3 79 62.0
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 1.8e-12 75.9 77 63.6
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 1.8e-12 75.9 97 47.4
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 1.8e-12 75.9 80 53.8
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 2.4e-12 75.5 103 44.7
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 3.1e-12 75.1 70 61.4
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 5.4e-12 74.3 83 50.6
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 9.2e-12 73.6 97 48.5
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 9.2e-12 73.6 62 59.7
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 1.2e-11 73.2 75 53.3
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 1.2e-11 73.2 64 60.9
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 1.2e-11 73.2 64 60.9
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 1.2e-11 73.2 64 60.9
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 1.2e-11 73.2 64 60.9
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 1.2e-11 73.2 64 60.9
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 1.2e-11 73.2 71 54.9
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 1.2e-11 73.2 82 52.4
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 1.2e-11 73.2 82 52.4
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 1.6e-11 72.8 99 48.5
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 2.0e-11 72.4 77 59.7
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 2.0e-11 72.4 92 48.9
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 3.5e-11 71.6 62 51.6
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 3.5e-11 71.6 79 53.2
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 5.9e-11 70.9 62 51.6
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 5.9e-11 70.9 72 63.9
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 7.8e-11 70.5 62 51.6
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 7.8e-11 70.5 59 55.9
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 1.0e-10 70.1 84 57.1
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 1.0e-10 70.1 91 47.3
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.0e-10 70.1 75 52.0
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 1.0e-10 70.1 71 60.6
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.0e-10 70.1 64 60.9
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 2.3e-10 68.9 77 50.6
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 2.9e-10 68.6 69 56.5
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 2.9e-10 68.6 76 51.3
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 5.0e-10 67.8 74 51.4
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 5.0e-10 67.8 66 57.6
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 6.6e-10 67.4 62 50.0
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 6.6e-10 67.4 62 50.0
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 6.6e-10 67.4 57 54.4
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 8.6e-10 67.0 87 50.6
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 8.6e-10 67.0 45 64.4
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 8.6e-10 67.0 45 75.6
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 8.6e-10 67.0 45 75.6
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 1.1e-09 66.6 68 55.9
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 1.9e-09 65.9 64 53.1
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 3.3e-09 65.1 42 66.7
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 3.3e-09 65.1 85 47.1
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 7.3e-09 63.9 63 54.0
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 7.3e-09 63.9 42 66.7
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 7.3e-09 63.9 45 66.7
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 9.5e-09 63.5 45 60.0
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 9.5e-09 63.5 78 53.8
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 9.5e-09 63.5 86 47.7
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 2.1e-08 62.4 86 46.5
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 2.8e-08 62.0 62 53.2
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 4.7e-08 61.2 62 54.8
unitig_22.g5530 Utricularia gibba HOM05D007247 ORTHO05D009208 8.0e-08 60.5 64 54.7
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 1.0e-07 60.1 88 45.5
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 1.4e-07 59.7 62 51.6
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 1.8e-07 59.3 85 43.5
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.8e-07 59.3 85 43.5
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.3e-07 58.9 80 45.0
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.3e-07 58.9 80 45.0
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.0e-07 58.5 85 43.5
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 3.0e-07 58.5 47 63.8
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 5.2e-07 57.8 57 50.9
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 6.8e-07 57.4 89 47.2
Sed0018286 Sechium edule HOM05D008067 ORTHO05D010226 8.9e-07 57.0 51 49.0
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 1.2e-06 56.6 42 69.0
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.6e-06 55.5 46 58.7
CsaV3_1G030530 Cucumis sativus L. HOM05D008067 ORTHO05D010226 3.4e-06 55.1 69 44.9
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.4e-06 54.7 49 57.1
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.4e-06 54.7 49 57.1
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 4.4e-06 54.7 87 42.5
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 5.7e-06 54.3 49 57.1
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 5.7e-06 54.3 42 61.9
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 5.7e-06 54.3 50 50.0
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 7.5e-06 53.9 60 46.7
Lsat_1_v5_gn_9_89061 Lactuca sativa HOM05D007247 ORTHO05D009208 7.5e-06 53.9 33 72.7
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 7.5e-06 53.9 49 59.2
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 9.8e-06 53.5 46 56.5
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 9.8e-06 53.5 49 59.2


User provided reference genes

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