Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 0.0e+00 1699.9 1016 100.0
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 0.0e+00 1405.6 908 87.9
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 4.2e-291 1005.0 913 70.0
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 8.5e-260 901.0 834 68.3
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 6.2e-218 761.9 1048 55.5
Atru.chr11.2102 Acer truncatum HOM05D002002 ORTHO05D008797 2.3e-212 743.4 919 55.3
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 2.6e-200 703.4 910 51.9
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 2.7e-197 693.3 972 54.4
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 1.1e-193 681.4 925 51.0
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 2.2e-191 673.7 934 51.7
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 3.8e-183 646.4 908 51.7
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 3.0e-180 636.7 699 59.4
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 5.1e-180 636.0 1072 47.9
Ciclev10030634m.g Citrus clementina HOM05D002002 ORTHO05D008797 5.6e-179 632.5 1047 48.6
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 3.1e-177 626.7 911 50.4
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 5.3e-177 625.9 986 48.5
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 1.5e-176 624.4 1045 47.2
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 2.9e-175 620.2 1017 48.7
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 4.9e-175 619.4 935 51.0
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 2.5e-174 617.1 935 50.9
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 1.6e-173 614.4 861 50.4
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 7.9e-173 612.1 936 51.6
Thecc.02G259600 Theobroma cacao HOM05D002002 ORTHO05D008797 5.3e-169 599.4 1063 50.3
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 2.2e-167 594.0 910 48.9
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 5.1e-164 582.8 1003 45.6
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 8.8e-164 582.0 904 46.2
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 1.1e-163 581.6 816 50.4
CANSAT01G0132 Cannabis sativa HOM05D002002 ORTHO05D008797 6.3e-162 575.9 919 50.3
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 6.3e-162 575.9 909 46.1
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 4.5e-160 569.7 926 48.6
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 2.9e-159 567.0 911 48.6
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 1.4e-156 558.1 1005 46.6
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 1.8e-156 557.8 1032 45.2
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 6.3e-154 549.3 866 48.7
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 1.3e-151 541.6 928 46.0
TWI75G1475 Tripterygium wilfordii HOM05D002002 ORTHO05D008797 1.7e-151 541.2 925 45.7
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 5.0e-151 539.7 848 46.6
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 6.5e-151 539.3 992 45.0
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 1.9e-150 537.7 863 46.6
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 2.6e-147 527.3 919 45.7
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 8.2e-146 522.3 837 45.6
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 5.3e-145 519.6 723 53.5
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 2.2e-143 514.2 865 45.1
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 1.1e-142 511.9 984 43.5
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 4.0e-140 503.4 921 47.4
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 4.1e-137 493.4 837 44.3
Nn4g22624 Nelumbo nucifera HOM05D002002 ORTHO05D008797 1.4e-132 478.4 1076 42.1
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 4.5e-128 463.4 860 44.3
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 5.0e-127 459.9 1005 42.4
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 6.5e-127 459.5 613 51.5
Nn3g16709 Nelumbo nucifera HOM05D002002 ORTHO05D008797 5.5e-126 456.4 958 40.7
TAR622G0079 Trochodendron aralioides HOM05D002002 ORTHO05D008797 2.3e-124 451.1 876 46.5
Migut.K00597 Erythranthe guttata HOM05D002002 ORTHO05D008797 1.5e-123 448.4 954 42.9
PGR119G0425 Punica granatum HOM05D002002 ORTHO05D008797 3.7e-122 443.7 1052 42.8
CAN.G832.3 Capsicum annuum HOM05D002002 ORTHO05D008797 3.1e-121 440.7 850 43.8
AUR62005461 Chenopodium quinoa HOM05D002002 ORTHO05D008797 1.9e-118 431.4 769 43.4
COL.COLO4_24277 Corchorus olitorius HOM05D002002 ORTHO05D008797 9.5e-118 429.1 713 49.5
EL10Ac6g13807 Beta vulgaris HOM05D002002 ORTHO05D008797 3.4e-115 420.6 894 42.3
AUR62024280 Chenopodium quinoa HOM05D002002 ORTHO05D008797 5.8e-115 419.9 793 42.1
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 7.5e-115 419.5 986 42.8
Peaxi162Scf00128g00134 Petunia axillaris HOM05D002002 ORTHO05D008797 1.6e-112 411.8 941 41.7
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 1.0e-111 409.1 1076 39.6
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 3.9e-111 407.1 741 43.0
Hund25388 Selenicereus undatus HOM05D002002 ORTHO05D008797 5.2e-108 396.7 929 39.1
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 2.0e-107 394.8 477 53.5
PSO017G3282 Papaver somniferum HOM05D002002 ORTHO05D008797 5.0e-103 380.2 936 39.5
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 8.1e-101 372.9 915 38.1
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 1.5e-99 368.6 792 42.0
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 3.4e-99 367.5 905 40.2
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 7.5e-99 366.3 899 40.2
Sc11g0000970 Simmondsia chinensis HOM05D002002 ORTHO05D008797 2.6e-91 341.3 988 37.9
Cc11_g15720 Coffea canephora HOM05D002002 ORTHO05D008797 1.1e-89 335.9 915 37.0
DCAR_031153 Daucus carota HOM05D002002 ORTHO05D008797 1.1e-89 335.9 720 40.1
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 7.8e-88 329.7 892 38.3
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 6.4e-82 310.1 920 37.6
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 8.4e-82 309.7 966 37.0
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 5.4e-81 307.0 785 37.2
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 3.3e-78 297.7 765 41.6
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 1.3e-77 295.8 612 39.2
HanXRQChr08g0208141 Helianthus annuus HOM05D002002 ORTHO05D008797 1.4e-76 292.4 769 35.6
Aa31LG4G10340 Aethionema arabicum HOM05D002002 ORTHO05D008711 1.2e-75 289.3 1067 33.4
AL2G30050 Arabidopsis lyrata HOM05D002002 ORTHO05D008797 8.7e-71 273.1 805 34.3
CARHR063850 Cardamine hirsuta HOM05D002002 ORTHO05D008797 2.1e-69 268.5 929 35.1
Sp5g25780 Schrenkiella parvula HOM05D002002 ORTHO05D008797 2.9e-66 258.1 1070 33.6
TPR.G3029 Trifolium pratense HOM05D002002 ORTHO05D008797 8.7e-63 246.5 708 37.0
Thhalv10018098m.g Eutrema salsugineum HOM05D002002 ORTHO05D008797 7.4e-62 243.4 1021 33.3
SGA_v2.0_scaffold98G29360 Striga asiatica HOM05D002002 ORTHO05D008797 3.9e-55 221.1 442 40.5
Lj6A812T43 Lonicera japonica HOM05D002002 ORTHO05D008797 2.6e-51 208.4 370 40.8
HPP92_005414 Vanilla planifolia HOM05D002002 ORTHO05D008797 7.7e-51 206.8 939 31.0
TPR.G3025 Trifolium pratense HOM05D002002 ORTHO05D008797 1.7e-50 205.7 265 49.8
A02p16740 Brassica napus HOM05D002002 ORTHO05D008797 1.1e-49 203.0 918 31.0
AT1G70620 Arabidopsis thaliana HOM05D002002 ORTHO05D008797 1.9e-49 202.2 536 38.2
BraA02t06728Z Brassica rapa HOM05D002002 ORTHO05D008797 1.9e-49 202.2 933 30.1
CDE07G1782 Ceratophyllum demersum HOM05D002002 ORTHO05D008797 9.4e-49 199.9 785 32.5
SEGI_21221 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 6.7e-47 193.7 782 31.1
Sed0026296 Sechium edule HOM05D002002 ORTHO05D008797 1.5e-43 182.6 505 38.0
Os04g0661700 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D008797 1.9e-41 175.6 923 30.0
Carub.0002s1735 Capsella rubella HOM05D002002 ORTHO05D008797 1.0e-39 169.9 538 35.5
SEGI_37990 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 1.8e-39 169.1 740 30.1
BcaB05g24599 Brassica carinata HOM05D002002 ORTHO05D008797 9.7e-38 163.3 907 30.4
unitig_26.g10348 Utricularia gibba HOM05D002002 ORTHO05D008797 7.0e-36 157.1 910 30.9
Solyc05g013490.4 Solanum lycopersicum HOM05D002002 ORTHO05D008797 8.0e-32 143.7 377 43.0
TPR.G2569 Trifolium pratense HOM05D002002 ORTHO05D008797 2.6e-30 138.7 152 53.3
BcaC03g15213 Brassica carinata HOM05D002002 ORTHO05D008797 3.3e-30 138.3 914 28.6
C02p28000 Brassica napus HOM05D002002 ORTHO05D008797 3.3e-30 138.3 758 26.9
BolC2t08843H Brassica oleracea HOM05D002002 ORTHO05D008797 6.3e-29 134.0 1073 29.1
Zm00001eb067460 Zea mays HOM05D002002 ORTHO05D008797 4.0e-23 114.8 573 31.2
TPR.G1066 Trifolium pratense HOM05D002002 ORTHO05D008797 5.7e-22 110.9 113 57.5
Mapoly0026s0020 Marchantia polymorpha HOM05D002002 ORTHO05D008797 1.0e-18 100.1 273 37.0
Pp3c22_14720 Physcomitrium patens HOM05D002002 ORTHO05D008797 4.0e-15 88.2 883 26.7
unitig_26.g10410 Utricularia gibba HOM05D002002 ORTHO05D008797 2.0e-14 85.9 191 40.8
GSVIVG01005755001 Vitis vinifera HOM05D002002 ORTHO05D008797 2.0e-14 85.9 76 64.5
Lsat_1_v5_gn_0_41981 Lactuca sativa HOM05D002002 ORTHO05D008797 7.2e-09 67.4 114 40.4
Lj6P812T17 Lonicera japonica HOM05D002002 ORTHO05D008797 2.1e-08 65.9 99 44.4
Sed0017129 Sechium edule HOM05D002002 ORTHO05D008797 6.8e-07 60.8 246 30.9
TPR.G3084 Trifolium pratense HOM05D002002 ORTHO05D012248 8.9e-07 60.5 110 44.5
VMungo1127G1886 Vigna mungo HOM05D019972 ORTHO05D021033 5.7e-06 57.8 193 33.2
VMungo0647G2210 Vigna mungo HOM05D019972 ORTHO05D021033 7.5e-06 57.4 221 30.8


User provided reference genes

Program Settings