Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 2.3e-177 625.5 342 100.0
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 1.1e-153 547.0 342 85.7
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 2.2e-151 539.3 361 85.0
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 3.6e-130 468.8 354 72.9
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 4.7e-130 468.4 348 72.1
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 8.1e-130 467.6 347 74.9
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 2.6e-128 462.6 352 71.0
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 7.6e-128 461.1 350 75.1
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 2.9e-127 459.1 347 75.8
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 1.2e-125 453.8 359 69.1
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 4.6e-125 451.8 354 70.3
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 6.6e-124 448.0 404 68.3
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 7.3e-123 444.5 356 69.7
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 2.8e-122 442.6 347 73.8
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 8.1e-122 441.0 353 70.8
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 1.4e-121 440.3 352 73.3
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 4.0e-121 438.7 351 72.1
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 6.9e-121 438.0 356 71.3
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 9.9e-120 434.1 356 67.1
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 2.9e-119 432.6 356 66.9
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.9e-119 432.6 356 66.9
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.1e-118 430.6 356 66.9
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 2.4e-118 429.5 352 71.3
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 5.4e-118 428.3 351 70.7
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 4.6e-117 425.2 355 73.5
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 5.1e-116 421.8 355 73.2
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 3.3e-115 419.1 377 65.5
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 9.6e-115 417.5 354 66.4
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 1.3e-114 417.2 344 69.8
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 1.3e-114 417.2 348 67.0
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 4.8e-114 415.2 354 68.4
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 6.2e-114 414.8 354 66.1
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 6.2e-114 414.8 354 66.1
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 2.4e-113 412.9 360 64.4
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 2.4e-113 412.9 298 76.2
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 4.0e-113 412.1 354 64.1
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 4.0e-113 412.1 358 65.9
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 4.0e-113 412.1 358 65.9
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 1.2e-112 410.6 360 63.3
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 1.5e-112 410.2 360 62.8
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 1.5e-112 410.2 348 69.3
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 2.0e-112 409.8 353 71.4
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 4.5e-112 408.7 361 68.1
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 7.6e-112 407.9 359 64.1
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 1.7e-111 406.8 296 75.0
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 6.4e-111 404.8 353 67.1
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 6.4e-111 404.8 356 63.2
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 1.4e-110 403.7 360 63.3
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 1.9e-110 403.3 358 65.9
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 1.9e-110 403.3 353 64.9
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 3.2e-110 402.5 352 69.9
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 4.2e-110 402.1 352 66.8
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 4.2e-110 402.1 350 67.1
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 9.3e-110 401.0 350 66.9
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 1.6e-109 400.2 358 65.9
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 2.7e-109 399.4 355 68.7
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 3.5e-109 399.1 349 66.2
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 1.0e-108 397.5 357 62.7
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 1.3e-106 390.6 358 62.0
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 1.8e-105 386.7 358 61.5
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.8e-105 386.7 355 67.9
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 6.9e-105 384.8 343 66.5
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 1.2e-104 384.0 352 65.9
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 1.2e-104 384.0 355 63.4
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 4.5e-104 382.1 356 64.3
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 1.1e-102 377.5 329 66.3
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 3.2e-102 375.9 356 64.6
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 4.2e-102 375.6 361 60.4
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 4.2e-102 375.6 352 65.6
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 9.3e-102 374.4 363 64.2
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 9.3e-102 374.4 344 62.2
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 7.9e-101 371.3 351 64.4
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 1.8e-100 370.2 342 65.8
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 5.1e-100 368.6 352 62.5
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 8.7e-100 367.9 359 63.2
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 1.9e-99 366.7 362 59.1
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 7.4e-99 364.8 360 63.3
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 4.8e-98 362.1 355 59.2
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 1.7e-95 353.6 343 60.3
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 9.3e-94 347.8 193 88.1
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 8.8e-92 341.3 430 51.6
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 4.3e-91 339.0 280 65.0
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 5.7e-91 338.6 192 84.4
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 1.3e-90 337.4 356 56.5
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 3.7e-90 335.9 342 59.4
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 4.8e-90 335.5 353 55.2
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 1.4e-89 334.0 278 69.1
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 3.4e-88 329.3 342 58.5
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 1.0e-87 327.8 363 56.5
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 2.2e-87 326.6 367 58.3
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 6.5e-87 325.1 356 55.3
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 2.1e-85 320.1 333 60.1
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 2.7e-85 319.7 394 56.1
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 1.3e-82 310.8 277 67.1
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 2.2e-82 310.1 345 56.8
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.5e-80 303.9 346 54.9
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 5.0e-79 298.9 346 52.9
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 1.8e-76 290.4 279 64.5
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 6.7e-76 288.5 286 62.2
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 2.2e-74 283.5 277 62.1
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 4.8e-74 282.3 320 54.7
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.4e-68 264.2 280 62.5
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 1.1e-65 254.6 283 52.7
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 2.2e-63 246.9 196 63.8
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 8.5e-63 245.0 262 60.7
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 6.1e-53 212.2 249 45.8
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 5.2e-52 209.1 173 58.4
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 2.6e-51 206.8 255 47.1
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 4.5e-48 196.1 262 44.7
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 4.3e-46 189.5 193 48.7
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 1.2e-24 118.2 82 64.6
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 2.8e-21 107.1 129 44.2
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 4.4e-19 99.8 72 63.9
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 1.3e-18 98.2 133 41.4
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 2.4e-17 94.0 162 35.2
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 3.2e-17 93.6 191 33.5
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 1.0e-15 88.6 57 80.7
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 6.6e-15 85.9 47 93.6
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 9.6e-14 82.0 92 52.2
Solyc05g013480.4 Solanum lycopersicum HOM05D006540 ORTHO05D008202 9.0e-12 75.5 195 43.6
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 4.2e-09 66.6 44 63.6
TAR623G1425 Trochodendron aralioides HOM05D000432 ORTHO05D000320 5.1e-07 59.7 89 42.7


User provided reference genes

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