Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 1.3e-156 556.6 336 100.0
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 4.8e-119 431.8 217 95.9
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 8.0e-114 414.5 338 81.1
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 9.1e-110 401.0 338 80.2
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.7e-108 396.7 335 78.5
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 9.5e-107 391.0 335 77.9
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 1.3e-103 380.6 334 74.6
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.1e-102 375.6 354 72.6
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.6e-101 373.6 354 72.3
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.1e-99 367.5 346 72.0
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.1e-99 367.5 346 72.0
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 7.3e-99 364.8 336 74.4
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.6e-98 363.6 348 71.6
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 3.1e-97 359.4 340 74.1
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 6.8e-97 358.2 352 63.1
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 3.4e-96 355.9 335 71.3
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 3.4e-96 355.9 342 72.5
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.3e-95 354.0 349 71.6
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.3e-95 354.0 336 72.9
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.7e-95 353.6 337 72.4
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 2.9e-95 352.8 348 70.1
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 3.7e-95 352.4 337 72.4
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 4.9e-95 352.1 345 71.6
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.9e-95 352.1 343 70.8
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 8.3e-95 351.3 340 72.6
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 5.4e-94 348.6 346 70.2
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 7.0e-94 348.2 357 69.7
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 7.0e-94 348.2 367 68.4
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 9.2e-94 347.8 350 69.7
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 1.2e-93 347.4 340 70.3
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 2.0e-93 346.7 343 70.0
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 6.0e-93 345.1 321 75.7
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 7.8e-93 344.7 353 68.3
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.3e-92 344.0 367 66.8
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.3e-92 344.0 382 64.1
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 2.3e-92 343.2 348 69.5
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 6.6e-92 341.7 344 68.0
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 8.6e-92 341.3 343 70.6
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 8.6e-92 341.3 372 63.7
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.9e-91 340.1 339 69.9
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 1.9e-91 340.1 340 70.3
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 7.3e-91 338.2 334 70.7
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.2e-90 337.4 340 69.4
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.1e-90 336.7 343 67.9
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 4.7e-90 335.5 340 69.4
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 8.0e-90 334.7 344 68.3
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 8.0e-90 334.7 346 67.3
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 1.1e-89 334.3 394 50.5
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.1e-89 334.3 341 67.2
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.1e-89 334.3 341 68.6
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.4e-89 334.0 344 68.6
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.4e-89 334.0 334 71.9
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 3.1e-89 332.8 344 67.7
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 4.0e-89 332.4 335 70.7
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 8.9e-89 331.3 345 65.2
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 2.6e-88 329.7 345 66.7
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 7.5e-88 328.2 345 67.2
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.7e-87 327.0 324 69.8
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 3.7e-87 325.9 336 67.9
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 4.9e-87 325.5 282 78.7
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.1e-86 324.3 338 68.0
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 1.4e-86 323.9 338 61.8
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.4e-86 323.9 286 76.6
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.4e-86 323.2 340 68.8
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.4e-86 323.2 340 68.8
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 4.1e-86 322.4 331 68.3
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 4.6e-85 318.9 336 65.2
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.0e-84 317.8 355 65.4
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.0e-84 316.2 340 67.4
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 3.0e-84 316.2 350 66.3
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 3.0e-84 316.2 336 67.3
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.9e-84 315.8 283 76.0
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 8.6e-84 314.7 348 65.5
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 8.6e-84 314.7 335 65.7
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.1e-83 314.3 283 75.3
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.5e-83 313.2 283 75.6
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.6e-82 310.5 283 75.6
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.1e-82 310.1 295 73.2
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 4.7e-82 308.9 346 63.3
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 3.7e-79 299.3 331 65.0
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.7e-79 299.3 340 64.4
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 6.4e-79 298.5 338 63.9
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 3.2e-78 296.2 333 65.2
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.6e-77 293.9 341 64.5
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 3.5e-77 292.7 299 72.2
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 3.5e-77 292.7 338 60.4
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.0e-76 291.2 288 62.8
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 8.6e-76 288.1 235 62.6
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 9.5e-75 284.6 283 68.9
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.5e-75 284.6 245 59.2
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.2e-74 284.3 326 64.4
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.2e-74 284.3 245 59.6
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 1.4e-73 280.8 339 63.1
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 4.0e-73 279.3 334 62.9
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 4.0e-73 279.3 333 63.1
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 5.2e-73 278.9 348 58.3
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.6e-72 275.0 340 61.5
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.4e-71 271.6 218 63.3
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.4e-70 270.8 310 67.1
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.2e-70 269.6 333 61.0
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 5.4e-70 268.9 209 66.0
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.1e-70 268.5 361 43.5
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 7.8e-69 265.0 417 53.2
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 2.3e-68 263.5 295 65.1
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.9e-67 260.4 357 58.5
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.6e-67 258.8 334 60.2
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.0e-64 250.4 235 77.4
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 4.9e-63 245.7 318 45.6
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.1e-62 244.6 165 70.3
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 4.2e-62 242.7 347 55.3
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 8.7e-60 235.0 336 57.7
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 1.7e-55 220.7 328 56.1
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 4.9e-47 192.6 183 56.3
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 6.5e-47 192.2 192 81.2
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 2.5e-46 190.3 192 81.2
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 9.3e-46 188.3 175 55.4
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.3e-44 184.5 241 66.8
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 1.1e-43 181.4 165 57.0
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 3.3e-43 179.9 264 58.7
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.2e-37 161.4 214 41.6
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 1.3e-34 151.4 127 55.1
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 4.8e-34 149.4 279 50.9
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 3.8e-31 139.8 286 49.0
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.6e-29 132.9 142 90.1
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.3e-28 130.6 178 43.8
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.5e-27 127.9 176 43.8
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.5e-27 127.1 185 42.2
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 3.3e-27 126.7 166 77.7
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 2.5e-22 110.5 85 62.4
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.2e-22 109.0 127 88.2
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.8e-20 104.4 113 49.6
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 3.9e-20 103.2 129 49.6
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 4.4e-19 99.8 133 66.2
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 4.8e-18 96.3 64 71.9
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.1e-17 93.2 79 58.2
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.2e-16 91.7 135 83.0
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.0e-12 77.0 41 80.5
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 9.7e-11 72.0 54 64.8
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 2.0e-08 64.3 46 78.3
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 4.5e-08 63.2 42 64.3
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 5.9e-08 62.8 56 58.9
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 8.5e-07 58.9 58 48.3
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.1e-06 58.5 35 74.3
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.1e-06 58.5 35 74.3
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 1.1e-06 58.5 37 73.0
Dinv15974 Davidia involucrata HOM05D046031 ORTHO05D006215 9.4e-06 55.5 37 81.1


User provided reference genes

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