Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009198 Carpinus fangiana HOM05D006585 ORTHO05D007798 1.5e-167 592.8 301 100.0
QL03p058556 Quercus lobata HOM05D006585 ORTHO05D007798 4.1e-101 372.1 304 65.5
CiPaw.05G183700 Carya illinoinensis HOM05D006585 ORTHO05D007798 2.0e-92 343.2 302 62.6
Haze_12236 Corylus avellana HOM05D006585 ORTHO05D007798 6.3e-86 321.6 217 79.3
arahy.Tifrunner.gnm1.ann1.I6QGYY Arachis hypogaea HOM05D006585 ORTHO05D007798 9.8e-79 297.7 304 54.9
arahy.Tifrunner.gnm1.ann1.QD46ZG Arachis hypogaea HOM05D006585 ORTHO05D007798 3.5e-76 289.3 304 53.9
RcHm_v2.0_Chr4g0433351 Rosa chinensis HOM05D006585 ORTHO05D007798 3.5e-76 289.3 323 50.2
Thecc.02G257200 Theobroma cacao HOM05D006585 ORTHO05D007798 2.3e-75 286.6 313 49.8
Duzib248G0505 Durio zibethinus HOM05D006585 ORTHO05D007798 6.6e-75 285.0 305 51.5
Lj4g0008721 Lotus japonicus HOM05D006585 ORTHO05D007798 2.5e-74 283.1 311 55.6
Medtr2g079800 Medicago truncatula HOM05D006585 ORTHO05D007798 7.2e-74 281.6 307 53.4
Glyma.18G143200 Glycine max HOM05D006585 ORTHO05D007798 1.6e-73 280.4 303 54.1
Dinv24805 Davidia involucrata HOM05D006585 ORTHO05D007798 1.8e-72 276.9 306 53.6
Gorai.005G179800 Gossypium raimondii HOM05D006585 ORTHO05D007798 1.8e-72 276.9 303 49.8
Phvul.003G063800 Phaseolus vulgaris HOM05D006585 ORTHO05D007798 1.8e-72 276.9 306 53.3
TWI36G0027 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 6.8e-72 275.0 285 54.0
Psat1g023160 Pisum sativum HOM05D006585 ORTHO05D007798 1.5e-71 273.9 306 52.0
FvH4_4g25900 Fragaria vesca HOM05D006585 ORTHO05D007798 5.7e-71 271.9 323 48.0
Manes.13G025900 Manihot esculenta HOM05D006585 ORTHO05D007798 7.5e-71 271.6 289 54.0
TWI75G0333 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 1.7e-70 270.4 286 52.4
Medtr8g069560 Medicago truncatula HOM05D006585 ORTHO05D007798 2.2e-70 270.0 329 50.5
Prupe.1G247500 Prunus persica HOM05D006585 ORTHO05D007798 6.3e-70 268.5 348 46.0
ClCG08G017740 Citrullus lanatus HOM05D006585 ORTHO05D007798 3.1e-69 266.2 319 48.3
CANSAT01G1755 Cannabis sativa HOM05D006585 ORTHO05D007798 7.0e-69 265.0 324 45.4
Gohir.A03G136500 Gossypium hirsutum HOM05D006585 ORTHO05D007798 2.7e-68 263.1 283 49.5
GSVIVG01004087001 Vitis vinifera HOM05D006585 ORTHO05D007798 1.0e-67 261.2 304 53.9
Cpa.g.sc33.3 Carica papaya HOM05D006585 ORTHO05D007798 3.8e-67 259.2 298 53.4
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 5.0e-67 258.8 291 49.1
MD13G1097800 Malus domestica HOM05D006585 ORTHO05D007798 1.9e-66 256.9 346 46.0
Potri.010G044800 Populus trichocarpa HOM05D006585 ORTHO05D007798 2.5e-66 256.5 306 50.7
FAN17G2552 Fragaria x ananassa HOM05D006585 ORTHO05D007798 9.5e-66 254.6 339 44.5
Prupe.1G247600 Prunus persica HOM05D006585 ORTHO05D007798 6.1e-65 251.9 289 51.6
Sed0016045 Sechium edule HOM05D006585 ORTHO05D007798 1.4e-64 250.8 307 49.2
MD13G1097900 Malus domestica HOM05D006585 ORTHO05D007798 5.2e-64 248.8 335 45.4
FAN12G1097 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.2e-63 247.7 320 45.3
FAN12G1379 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.2e-63 247.7 320 45.3
TAR371G0523 Trochodendron aralioides HOM05D006585 ORTHO05D007798 1.5e-63 247.3 306 48.0
Ca_22577_v3 Cicer arietinum L. HOM05D006585 ORTHO05D007798 4.4e-63 245.7 289 52.2
Actinidia27800 Actinidia chinensis HOM05D006585 ORTHO05D007798 2.2e-62 243.4 331 46.5
Lj6C811T17 Lonicera japonica HOM05D006585 ORTHO05D007798 2.2e-62 243.4 305 49.8
VMungo0251G2192 Vigna mungo HOM05D006585 ORTHO05D007798 1.1e-61 241.1 298 49.0
THA.LOC104823651 Tarenaya hassleriana HOM05D006585 ORTHO05D007798 1.7e-59 233.8 310 44.5
Sabra10G0023300 Salix brachista HOM05D000740 ORTHO05D003236 8.6e-59 231.5 343 44.6
Gohir.D02G159700 Gossypium hirsutum HOM05D006585 ORTHO05D007798 4.7e-57 225.7 265 46.8
Ciclev10033875m.g Citrus clementina HOM05D006585 ORTHO05D007798 2.3e-56 223.4 309 46.6
Aqoxy5G03808 Aquilegia oxysepala HOM05D006585 ORTHO05D007798 4.1e-53 212.6 306 43.1
AL1G21590 Arabidopsis lyrata HOM05D006585 ORTHO05D007798 1.0e-51 208.0 345 38.8
DCAR_031138 Daucus carota HOM05D006585 ORTHO05D007798 3.3e-50 203.0 305 44.3
Dinv20613 Davidia involucrata HOM05D006585 ORTHO05D007798 5.6e-50 202.2 309 43.0
Nn3g16750 Nelumbo nucifera HOM05D006585 ORTHO05D007798 6.2e-49 198.7 307 44.3
Sopen05g008150 Solanum pennellii HOM05D006585 ORTHO05D007798 1.1e-48 198.0 315 40.3
AT1G10710 Arabidopsis thaliana HOM05D006585 ORTHO05D007798 5.2e-48 195.7 346 36.4
Sp1g09410 Schrenkiella parvula HOM05D006585 ORTHO05D007798 2.0e-47 193.7 335 38.2
Carub.0001s1022 Capsella rubella HOM05D006585 ORTHO05D007798 1.3e-46 191.0 360 37.5
TAR629G0056 Trochodendron aralioides HOM05D006585 ORTHO05D007798 1.3e-46 191.0 265 43.4
Thhalv10007956m.g Eutrema salsugineum HOM05D006585 ORTHO05D007798 2.9e-46 189.9 369 35.5
MBI16_g23844_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 4.9e-46 189.1 313 39.9
Nitab4.5_0002255g0100 Nicotiana tabacum HOM05D006585 ORTHO05D007798 3.2e-45 186.4 281 44.1
Peaxi162Scf00128g00033 Petunia axillaris HOM05D006585 ORTHO05D007798 4.1e-45 186.0 300 41.7
FAN07G1571 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.2e-44 184.5 155 57.4
Lalb_Chr16g0392221 Lupinus albus HOM05D006585 ORTHO05D007798 2.1e-44 183.7 210 52.9
MBI10_g00733_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 4.6e-44 182.6 314 40.1
CARHR010890 Cardamine hirsuta HOM05D006585 ORTHO05D007798 3.0e-43 179.9 344 36.9
Oeu049180.1 Olea europaea HOM05D006585 ORTHO05D007798 3.9e-43 179.5 316 38.3
Solyc05g013360.3 Solanum lycopersicum HOM05D006585 ORTHO05D007798 3.9e-43 179.5 303 39.3
FAN22G0568 Fragaria x ananassa HOM05D006585 ORTHO05D007798 4.3e-42 176.0 169 53.8
HanXRQChr17g0539731 Helianthus annuus HOM05D006585 ORTHO05D007798 7.3e-42 175.3 293 39.6
Cc11_g15560 Coffea canephora HOM05D006585 ORTHO05D007798 9.5e-42 174.9 327 41.0
GSVIVG01007676001 Vitis vinifera HOM05D006585 ORTHO05D007798 2.8e-41 173.3 303 39.6
Lsat_1_v5_gn_3_28841 Lactuca sativa HOM05D006585 ORTHO05D007798 1.8e-40 170.6 318 38.1
Sc04g0009420 Simmondsia chinensis HOM05D006585 ORTHO05D007798 2.4e-40 170.2 315 37.8
BcaC07g41800 Brassica carinata HOM05D006585 ORTHO05D007798 3.1e-40 169.9 355 34.4
Aa31LG1G4120 Aethionema arabicum HOM05D006585 ORTHO05D007798 1.2e-39 167.9 301 36.5
BcaB08g37368 Brassica carinata HOM05D006585 ORTHO05D007798 1.7e-38 164.1 405 31.6
C08p48610 Brassica napus HOM05D006585 ORTHO05D007798 1.1e-37 161.4 375 32.3
Nitab4.5_0002552g0050 Nicotiana tabacum HOM05D006585 ORTHO05D007798 3.5e-36 156.4 275 40.0
EL10Ac6g13783 Beta vulgaris HOM05D006585 ORTHO05D007798 1.0e-35 154.8 326 33.1
SGA_v2.0_scaffold63G21726 Striga asiatica HOM05D006585 ORTHO05D007798 3.0e-35 153.3 301 36.2
Actinidia08143 Actinidia chinensis HOM05D006585 ORTHO05D007798 3.9e-35 152.9 346 35.8
Ah.03g133160 Amaranthus hybridus HOM05D006585 ORTHO05D007798 5.1e-35 152.5 291 35.1
BraA09t41832Z Brassica rapa HOM05D006585 ORTHO05D007798 2.5e-34 150.2 379 31.1
COL.COLO4_30156 Corchorus olitorius HOM05D006585 ORTHO05D007798 9.6e-34 148.3 291 36.8
PGR119G1584 Punica granatum HOM05D006585 ORTHO05D007798 2.8e-33 146.7 310 37.1
BolC8t52400H Brassica oleracea HOM05D006585 ORTHO05D007798 4.7e-33 146.0 417 29.3
AUR62024297 Chenopodium quinoa HOM05D006585 ORTHO05D007798 6.2e-33 145.6 299 34.4
CSS0026295 Camellia sinensis var. sinensis HOM05D006585 ORTHO05D007798 3.1e-32 143.3 121 54.5
Migut.E00193 Erythranthe guttata HOM05D006585 ORTHO05D007798 3.1e-32 143.3 272 37.9
TPR.G34666 Trifolium pratense HOM05D006585 ORTHO05D007798 5.3e-32 142.5 173 51.4
A09p64570 Brassica napus HOM05D006585 ORTHO05D007798 3.4e-31 139.8 383 29.8
ATR1154G038 Amborella trichopoda HOM05D006585 ORTHO05D007798 3.8e-30 136.3 297 33.7
Rhsim12G0041300 Rhododendron simsii HOM05D006585 ORTHO05D007798 3.8e-30 136.3 418 31.1
Atru.chr11.2134 Acer truncatum HOM05D006585 ORTHO05D007798 7.1e-29 132.1 287 38.0
SGA_v2.0_scaffold87G27084 Striga asiatica HOM05D006585 ORTHO05D007798 2.7e-28 130.2 341 30.8
Atru.chr11.2118 Acer truncatum HOM05D006585 ORTHO05D007798 3.9e-27 126.3 287 37.3
Glyma.08G283200 Glycine max HOM05D006585 ORTHO05D007798 8.7e-27 125.2 94 66.0
ECA246G2324 Erigeron canadensis HOM05D000225 ORTHO05D002520 3.3e-26 123.2 255 37.3
Thecc.03G022200 Theobroma cacao HOM05D006585 ORTHO05D007798 7.3e-26 122.1 239 36.0
Zm00001eb382430 Zea mays HOM05D006585 ORTHO05D007798 2.1e-25 120.6 345 29.3
SalBow8G1297 Salvia bowleyana HOM05D006585 ORTHO05D007798 9.9e-23 111.7 132 44.7
HPP92_008331 Vanilla planifolia HOM05D006585 ORTHO05D007798 2.2e-22 110.5 153 39.2
SHI17754 Sapria himalayana HOM05D006585 ORTHO05D007798 4.9e-22 109.4 206 34.5
ATR1154G026 Amborella trichopoda HOM05D006585 ORTHO05D007798 6.4e-22 109.0 258 32.9
PSO832G3049 Papaver somniferum HOM05D000629 ORTHO05D007798 1.3e-19 101.3 194 35.1
PSO063G7660 Papaver somniferum HOM05D000629 ORTHO05D007798 1.3e-17 94.7 193 33.7
Cc04_g11830 Coffea canephora HOM05D006585 ORTHO05D007798 7.6e-15 85.5 167 36.5
Oeu056719.1 Olea europaea HOM05D006585 ORTHO05D007798 6.4e-14 82.4 180 35.6
EL10Ac5g10683 Beta vulgaris HOM05D006585 ORTHO05D007798 2.5e-13 80.5 107 43.0
Lalb_Chr16g0392231 Lupinus albus HOM05D006585 ORTHO05D007798 9.3e-13 78.6 95 42.1
PSO832G2940 Papaver somniferum HOM05D006585 ORTHO05D007798 1.3e-11 74.7 112 37.5
SEGI_25539 Sequoiadendron giganteum HOM05D006585 ORTHO05D007798 3.0e-11 73.6 256 25.8
HPP92_008334 Vanilla planifolia HOM05D034240 ORTHO05D007798 1.5e-10 71.2 205 30.2
SGA_v2.0_scaffold779G53588 Striga asiatica HOM05D006585 ORTHO05D007798 5.6e-10 69.3 88 37.5
SalBow8G2270 Salvia bowleyana HOM05D006585 ORTHO05D007798 7.4e-10 68.9 191 32.5
SGA_v2.0_scaffold34G13586 Striga asiatica HOM05D006585 ORTHO05D007798 9.6e-10 68.6 88 37.5
CDE06G0796 Ceratophyllum demersum HOM05D006585 ORTHO05D007798 4.8e-09 66.2 93 39.8
PSO063G0496 Papaver somniferum HOM05D006585 ORTHO05D007798 1.8e-08 64.3 314 27.4
CiPaw.13G137800 Carya illinoinensis HOM05D006585 ORTHO05D007798 2.2e-06 57.4 43 67.4


User provided reference genes

Program Settings