Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009194 Carpinus fangiana HOM05D000300 ORTHO05D126184 2.1e-21 104.8 51 100.0
Haze_00998 Corylus avellana HOM05D000300 ORTHO05D008589 4.0e-17 90.5 45 95.6
Haze_12230 Corylus avellana HOM05D000300 ORTHO05D008589 5.2e-17 90.1 46 93.5
Cfa015551 Carpinus fangiana HOM05D000300 ORTHO05D008589 3.4e-16 87.4 45 91.1
QL03p058646 Quercus lobata HOM05D000300 ORTHO05D008589 3.2e-14 80.9 46 80.4
QL93p0114_0053 Quercus lobata HOM05D000300 ORTHO05D008589 3.2e-14 80.9 46 80.4
CiPaw.05G184500 Carya illinoinensis HOM05D000300 ORTHO05D008589 9.2e-14 79.3 45 80.0
Manes.13G026500 Manihot esculenta HOM05D000300 ORTHO05D008589 4.6e-13 77.0 45 77.8
Potri.006G157400 Populus trichocarpa HOM05D000300 ORTHO05D008589 7.8e-13 76.3 45 75.6
COL.COLO4_24238 Corchorus olitorius HOM05D000300 ORTHO05D008589 1.0e-12 75.9 45 75.6
Gohir.A03G136900 Gossypium hirsutum HOM05D000300 ORTHO05D008589 1.3e-12 75.5 45 75.6
Gohir.D02G160100 Gossypium hirsutum HOM05D000300 ORTHO05D008589 1.3e-12 75.5 45 75.6
Gorai.005G180200 Gossypium raimondii HOM05D000300 ORTHO05D008589 1.3e-12 75.5 45 75.6
MD16G1098000 Malus domestica HOM05D000300 ORTHO05D008589 1.3e-12 75.5 45 75.6
Thecc.02G256600 Theobroma cacao HOM05D000300 ORTHO05D008589 1.7e-12 75.1 45 75.6
MD13G1097100 Malus domestica HOM05D000300 ORTHO05D008589 3.0e-12 74.3 45 73.3
Nn1g07760 Nelumbo nucifera HOM05D000300 ORTHO05D008589 3.9e-12 73.9 45 75.6
CANSAT80G1407 Cannabis sativa HOM05D000300 ORTHO05D008589 6.6e-12 73.2 45 71.1
Potri.018G079600 Populus trichocarpa HOM05D000300 ORTHO05D008589 8.7e-12 72.8 45 73.3
Sabra18G0067300 Salix brachista HOM05D000300 ORTHO05D008589 8.7e-12 72.8 45 73.3
ClCG05G025610 Citrullus lanatus HOM05D000300 ORTHO05D008589 1.1e-11 72.4 45 71.1
Duzib248G0087 Durio zibethinus HOM05D000300 ORTHO05D008589 1.9e-11 71.6 45 73.3
Lj6C810T5 Lonicera japonica HOM05D000300 ORTHO05D008589 1.9e-11 71.6 46 69.6
TWI36G0947 Tripterygium wilfordii HOM05D000300 ORTHO05D008589 1.9e-11 71.6 45 66.7
MELO3C011969.2 Cucumis melo HOM05D000300 ORTHO05D008589 2.5e-11 71.2 45 71.1
TAR445G0002 Trochodendron aralioides HOM05D000300 ORTHO05D008589 2.5e-11 71.2 45 66.7
TAR622G0935 Trochodendron aralioides HOM05D000300 ORTHO05D008589 2.5e-11 71.2 45 66.7
Prupe.1G248500 Prunus persica HOM05D000300 ORTHO05D008589 4.3e-11 70.5 45 71.1
TWI18G1155 Tripterygium wilfordii HOM05D000300 ORTHO05D008589 5.6e-11 70.1 45 66.7
arahy.Tifrunner.gnm1.ann1.01S097 Arachis hypogaea HOM05D000300 ORTHO05D008589 9.6e-11 69.3 45 64.4
arahy.Tifrunner.gnm1.ann1.42J6NL Arachis hypogaea HOM05D000300 ORTHO05D008589 9.6e-11 69.3 45 64.4
Actinidia15078 Actinidia chinensis HOM05D000300 ORTHO05D008589 1.3e-10 68.9 45 68.9
Migut.F01726 Erythranthe guttata HOM05D000300 ORTHO05D008589 2.1e-10 68.2 45 64.4
Eucgr.H02521 Eucalyptus grandis HOM05D000300 ORTHO05D008589 2.1e-10 68.2 46 67.4
THA.LOC104823653 Tarenaya hassleriana HOM05D000300 ORTHO05D008589 2.1e-10 68.2 46 56.5
Peaxi162Scf00619g00118 Petunia axillaris HOM05D000300 ORTHO05D008589 2.8e-10 67.8 45 64.4
PGSC0003DMG400000993 Solanum tuberosum HOM05D000300 ORTHO05D008589 2.8e-10 67.8 45 62.2
CSS0045194 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008589 3.6e-10 67.4 45 66.7
Cpa.g.sc1088.4 Carica papaya HOM05D000300 ORTHO05D008589 3.6e-10 67.4 45 64.4
vmacro16211 Vaccinium macrocarpon HOM05D000300 ORTHO05D008589 3.6e-10 67.4 45 71.1
Aqoxy3G01101 Aquilegia oxysepala HOM05D000300 ORTHO05D008589 4.8e-10 67.0 47 59.6
RcHm_v2.0_Chr4g0410731 Rosa chinensis HOM05D000300 ORTHO05D008589 4.8e-10 67.0 45 62.2
Sed0003725 Sechium edule HOM05D000300 ORTHO05D008589 6.2e-10 66.6 45 71.1
Rhsim12G0112500 Rhododendron simsii HOM05D000300 ORTHO05D008589 8.1e-10 66.2 45 71.1
Hma1.2p1_0160F.1_g071210 Hydrangea macrophylla HOM05D000300 ORTHO05D008589 1.1e-09 65.9 45 66.7
Phvul.003G063200 Phaseolus vulgaris HOM05D000300 ORTHO05D008589 1.1e-09 65.9 45 62.2
Psat4g115000 Pisum sativum HOM05D000300 ORTHO05D008589 1.1e-09 65.9 45 60.0
Solyc11g006380.2 Solanum lycopersicum HOM05D000300 ORTHO05D008589 1.1e-09 65.9 45 60.0
Sopen11g002280 Solanum pennellii HOM05D000300 ORTHO05D008589 1.1e-09 65.9 45 60.0
Atru.chr11.2092 Acer truncatum HOM05D000300 ORTHO05D008589 1.4e-09 65.5 45 64.4
Medtr8g069570 Medicago truncatula HOM05D000300 ORTHO05D008589 1.4e-09 65.5 45 60.0
Nitab4.5_0000080g0260 Nicotiana tabacum HOM05D000300 ORTHO05D008589 1.4e-09 65.5 45 68.9
Nitab4.5_0008095g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008589 1.4e-09 65.5 45 68.9
PGR119G0150 Punica granatum HOM05D000300 ORTHO05D008589 1.4e-09 65.5 46 58.7
CAN.G143.57 Capsicum annuum HOM05D000300 ORTHO05D008589 1.8e-09 65.1 45 57.8
MBI10_g00725_MAGBIO Magnolia biondii HOM05D000300 ORTHO05D008589 1.8e-09 65.1 46 56.5
VMungo0251G3375 Vigna mungo HOM05D000300 ORTHO05D008589 1.8e-09 65.1 45 57.8
AUR62005434 Chenopodium quinoa HOM05D000300 ORTHO05D008589 2.4e-09 64.7 45 66.7
CDE01G0474 Ceratophyllum demersum HOM05D000300 ORTHO05D008589 3.1e-09 64.3 45 64.4
Ciclev10031342m.g Citrus clementina HOM05D000300 ORTHO05D008589 4.0e-09 63.9 45 62.2
Glyma.08G283500 Glycine max HOM05D000300 ORTHO05D008589 4.0e-09 63.9 45 64.4
Ca_22573_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 5.3e-09 63.5 45 60.0
Hund06017 Selenicereus undatus HOM05D000300 ORTHO05D008589 5.3e-09 63.5 46 63.0
DCAR_007064 Daucus carota HOM05D000300 ORTHO05D008589 6.9e-09 63.2 46 60.9
FvH4_4g12450 Fragaria vesca HOM05D000300 ORTHO05D008589 9.0e-09 62.8 45 62.2
FAN12G0647 Fragaria x ananassa HOM05D000300 ORTHO05D008589 9.0e-09 62.8 45 62.2
FAN22G1217 Fragaria x ananassa HOM05D000300 ORTHO05D008589 9.0e-09 62.8 45 62.2
Lj4g0001854 Lotus japonicus HOM05D000300 ORTHO05D008589 9.0e-09 62.8 45 62.2
CDE02G1537 Ceratophyllum demersum HOM05D000300 ORTHO05D008589 1.2e-08 62.4 45 62.2
TPR.G34661 Trifolium pratense HOM05D000300 ORTHO05D008589 1.2e-08 62.4 45 55.6
Actinidia37413 Actinidia chinensis HOM05D000300 ORTHO05D008589 1.5e-08 62.0 35 77.1
Aa31LG2G9770 Aethionema arabicum HOM05D000300 ORTHO05D008589 1.5e-08 62.0 45 53.3
MSTRG.383 Avicennia marina HOM05D000300 ORTHO05D008589 1.5e-08 62.0 45 60.0
BraA01t03083Z Brassica rapa HOM05D000300 ORTHO05D008589 1.5e-08 62.0 45 51.1
PSO017G7264 Papaver somniferum HOM05D000300 ORTHO05D008589 1.5e-08 62.0 45 60.0
CARHR051740 Cardamine hirsuta HOM05D000300 ORTHO05D008589 2.0e-08 61.6 45 51.1
AUR62024303 Chenopodium quinoa HOM05D000300 ORTHO05D008589 2.6e-08 61.2 45 60.0
Ca_21414_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 2.6e-08 61.2 45 57.8
AL2G15810 Arabidopsis lyrata HOM05D000300 ORTHO05D008589 3.4e-08 60.8 45 51.1
FAN17G1713 Fragaria x ananassa HOM05D000300 ORTHO05D008589 4.4e-08 60.5 45 57.8
AT1G60770 Arabidopsis thaliana HOM05D000300 ORTHO05D008589 5.8e-08 60.1 45 51.1
PSO478G1748 Papaver somniferum HOM05D000300 ORTHO05D008589 5.8e-08 60.1 45 60.0
Sp2g03990 Schrenkiella parvula HOM05D000300 ORTHO05D008589 5.8e-08 60.1 45 53.3
EL10Ac6g13773 Beta vulgaris HOM05D000300 ORTHO05D008589 7.6e-08 59.7 45 57.8
ECA233G0772 Erigeron canadensis HOM05D000300 ORTHO05D008589 7.6e-08 59.7 45 53.3
BcaC09g49378 Brassica carinata HOM05D000300 ORTHO05D008589 9.9e-08 59.3 45 51.1
C01p37280 Brassica napus HOM05D000300 ORTHO05D008589 9.9e-08 59.3 45 51.1
BolC1t03700H Brassica oleracea HOM05D000300 ORTHO05D008589 1.3e-07 58.9 45 51.1
Thhalv10023426m.g Eutrema salsugineum HOM05D000300 ORTHO05D008589 1.3e-07 58.9 45 48.9
CsaV3_5G031290 Cucumis sativus L. HOM05D000300 ORTHO05D008589 1.7e-07 58.5 45 62.2
Oeu000812.1 Olea europaea HOM05D000300 ORTHO05D008589 1.7e-07 58.5 45 55.6
A09p17290 Brassica napus HOM05D000300 ORTHO05D008589 2.2e-07 58.2 45 48.9
C02p18010 Brassica napus HOM05D000300 ORTHO05D008589 2.2e-07 58.2 45 48.9
C09p21470 Brassica napus HOM05D000300 ORTHO05D008589 2.2e-07 58.2 45 48.9
BolC9t55052H Brassica oleracea HOM05D000300 ORTHO05D008589 2.2e-07 58.2 45 48.9
BraA09t37358Z Brassica rapa HOM05D000300 ORTHO05D008589 2.2e-07 58.2 45 48.9
Sc04g0009400 Simmondsia chinensis HOM05D000300 ORTHO05D008589 2.2e-07 58.2 46 56.5
Carub.0002s0458 Capsella rubella HOM05D000300 ORTHO05D008589 2.9e-07 57.8 45 48.9
Lalb_Chr05g0228351 Lupinus albus HOM05D000300 ORTHO05D008589 3.8e-07 57.4 45 60.0


User provided reference genes

Program Settings