Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 3.4e-175 618.2 312 100.0
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 1.5e-127 459.9 312 79.2
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 3.4e-127 458.8 307 79.5
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 2.6e-119 432.6 316 74.7
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 2.6e-103 379.4 309 66.7
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 1.1e-101 374.0 332 64.5
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 1.5e-101 373.6 339 62.5
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 8.0e-100 367.9 324 65.1
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 4.0e-99 365.5 346 60.4
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 5.2e-99 365.2 326 62.0
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 5.2e-99 365.2 335 61.8
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 8.8e-99 364.4 315 64.4
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 3.3e-98 362.5 310 62.9
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 5.7e-98 361.7 283 68.2
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 7.5e-98 361.3 309 64.4
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.3e-97 360.5 326 64.1
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 3.7e-97 359.0 305 65.9
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 3.7e-97 359.0 316 61.7
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 8.2e-97 357.8 309 63.4
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.8e-96 356.7 313 63.3
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.8e-96 356.7 312 63.1
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 1.8e-96 356.7 310 63.9
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 9.1e-96 354.4 302 65.6
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 1.2e-95 354.0 314 64.0
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 4.5e-95 352.1 316 62.3
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 7.7e-95 351.3 318 63.5
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 1.7e-94 350.1 280 67.1
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.2e-94 349.7 340 60.9
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 2.2e-94 349.7 315 61.9
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.9e-94 349.4 347 60.2
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 3.8e-94 349.0 327 59.0
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 3.8e-94 349.0 302 64.2
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 5.0e-94 348.6 311 63.7
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.1e-93 347.4 340 61.2
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 1.5e-93 347.1 316 60.8
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.5e-93 346.3 312 63.8
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 5.5e-93 345.1 311 61.1
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 5.5e-93 345.1 312 63.8
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 1.6e-92 343.6 308 59.7
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 4.7e-92 342.0 310 61.9
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 6.1e-92 341.7 313 59.4
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.4e-91 340.5 312 63.5
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 1.8e-91 340.1 289 65.7
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 2.3e-91 339.7 307 61.2
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 6.8e-91 338.2 316 63.0
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 6.8e-91 338.2 318 59.1
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 2.6e-90 336.3 321 59.2
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 5.7e-90 335.1 313 59.4
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 1.3e-89 334.0 323 60.4
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 1.3e-89 334.0 326 59.2
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 2.2e-89 333.2 318 57.9
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 3.7e-89 332.4 304 59.9
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 4.8e-89 332.0 310 60.6
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 6.3e-89 331.6 320 57.2
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 8.3e-89 331.3 319 57.7
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 1.8e-88 330.1 326 56.4
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 4.1e-88 328.9 266 64.7
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 9.1e-88 327.8 329 55.9
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 9.1e-88 327.8 319 58.9
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 1.6e-87 327.0 331 56.5
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 1.6e-87 327.0 331 56.5
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 1.6e-87 327.0 314 59.6
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 1.7e-86 323.6 315 59.7
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 1.7e-86 323.6 277 63.5
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 3.8e-86 322.4 289 63.3
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 5.0e-86 322.0 311 58.2
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.1e-85 320.9 311 60.8
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 2.5e-85 319.7 306 56.9
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 3.6e-84 315.8 297 60.6
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 8.0e-84 314.7 365 51.5
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 3.0e-83 312.8 279 60.9
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 6.8e-83 311.6 318 55.3
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 1.2e-82 310.8 300 60.0
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 2.0e-82 310.1 307 59.3
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 5.7e-82 308.5 316 55.4
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 2.8e-81 306.2 304 55.9
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 2.8e-81 306.2 304 55.9
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 4.9e-81 305.4 233 65.7
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 8.3e-81 304.7 306 56.2
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 1.8e-80 303.5 255 63.9
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 2.4e-80 303.1 310 59.0
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 3.1e-80 302.8 309 57.0
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 9.2e-80 301.2 261 61.7
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 5.9e-79 298.5 307 56.4
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 7.8e-79 298.1 300 57.0
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 6.6e-78 295.0 313 55.3
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 1.2e-76 290.8 308 53.6
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 1.6e-76 290.4 261 59.8
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 1.6e-76 290.4 258 63.6
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 1.6e-76 290.4 312 52.9
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 2.8e-76 289.7 251 61.8
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 5.7e-74 282.0 311 54.7
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 5.7e-74 282.0 281 56.9
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 6.4e-73 278.5 195 72.8
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 4.6e-71 272.3 199 66.8
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 2.3e-70 270.0 221 63.3
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 5.0e-70 268.9 315 51.4
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 1.5e-69 267.3 298 52.0
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 4.4e-66 255.8 227 58.6
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 4.9e-65 252.3 311 53.1
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 2.7e-63 246.5 301 50.2
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 6.6e-62 241.9 370 44.1
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 3.6e-60 236.1 223 59.2
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 6.8e-59 231.9 185 63.8
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 8.9e-59 231.5 146 77.4
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 7.8e-55 218.4 185 61.6
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 9.5e-53 211.5 264 46.6
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 4.7e-52 209.1 139 77.7
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 1.1e-51 208.0 217 53.5
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 1.5e-50 204.1 227 52.0
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 1.1e-48 198.0 303 43.2
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.4e-48 196.8 225 56.0
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 7.8e-47 191.8 286 43.7
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 4.0e-43 179.5 214 46.3
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 1.7e-41 174.1 264 44.3
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 3.8e-41 172.9 237 43.9
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 1.3e-38 164.5 213 44.6
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 1.3e-38 164.5 213 44.6
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 1.9e-29 134.0 202 38.6
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 1.6e-28 131.0 78 80.8
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 1.8e-27 127.5 97 72.2
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 4.6e-23 112.8 262 34.7
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 2.5e-21 107.1 200 38.5
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 1.5e-13 81.3 81 58.0
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 7.2e-08 62.4 249 22.5


User provided reference genes

Program Settings