Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 1.1e-116 423.3 212 100.0
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 7.6e-86 320.9 204 83.8
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.6e-80 303.1 212 74.1
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 7.6e-78 294.3 213 72.8
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 1.1e-71 273.9 218 68.8
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 2.4e-71 272.7 214 67.8
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 4.6e-67 258.5 212 62.7
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 6.7e-66 254.6 223 62.8
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 5.7e-65 251.5 208 61.5
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 1.3e-64 250.4 224 60.3
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 1.6e-64 250.0 210 60.5
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 2.1e-64 249.6 214 62.6
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 6.2e-64 248.1 206 62.1
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 6.2e-64 248.1 192 66.1
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 8.2e-64 247.7 215 60.0
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 7.6e-62 241.1 216 58.8
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 7.6e-62 241.1 211 59.7
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 2.2e-61 239.6 211 61.6
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 2.9e-61 239.2 178 69.7
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 4.2e-60 235.3 178 68.5
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 1.6e-59 233.4 210 60.5
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 1.6e-59 233.4 202 60.9
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 2.1e-59 233.0 210 54.8
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 2.1e-59 233.0 214 57.9
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 3.5e-59 232.3 214 56.1
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 6.1e-59 231.5 212 58.0
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 6.7e-58 228.0 186 65.6
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 6.7e-58 228.0 220 58.2
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 1.9e-57 226.5 214 54.7
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 1.9e-57 226.5 220 55.9
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 3.3e-57 225.7 205 56.1
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 7.4e-57 224.6 218 56.4
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 1.3e-56 223.8 220 53.6
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 1.6e-56 223.4 215 57.7
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.6e-56 223.4 215 57.7
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 8.2e-56 221.1 208 58.2
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 2.4e-55 219.5 208 56.7
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 3.1e-55 219.2 220 56.8
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 4.1e-55 218.8 216 54.6
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 5.3e-55 218.4 177 63.8
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 6.9e-55 218.0 223 52.9
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 9.0e-55 217.6 224 54.0
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 1.2e-54 217.2 207 59.4
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.2e-54 217.2 219 55.7
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 4.5e-54 215.3 211 55.9
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 7.7e-54 214.5 216 54.6
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 2.9e-53 212.6 214 58.9
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 2.9e-53 212.6 206 54.4
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 2.9e-53 212.6 203 56.7
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 3.8e-53 212.2 200 58.0
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 5.0e-53 211.8 223 52.0
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 8.5e-53 211.1 208 53.4
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.1e-52 210.7 209 55.5
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 5.5e-52 208.4 193 61.7
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 5.5e-52 208.4 182 62.6
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 9.4e-52 207.6 209 54.5
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 9.4e-52 207.6 198 56.1
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 2.1e-51 206.5 205 54.1
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 2.1e-51 206.5 209 54.5
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 1.4e-50 203.8 218 55.0
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 6.7e-50 201.4 154 68.2
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 1.7e-48 196.8 168 63.1
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 4.8e-48 195.3 208 50.0
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 6.9e-47 191.4 203 50.2
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 1.5e-46 190.3 215 47.9
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 1.5e-46 190.3 209 51.7
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 1.7e-45 186.8 214 51.4
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 2.2e-45 186.4 182 54.4
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 2.2e-45 186.4 220 46.8
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 2.9e-45 186.0 216 49.5
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 6.5e-45 184.9 286 42.0
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 2.5e-44 183.0 171 58.5
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 3.2e-44 182.6 217 46.5
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 9.4e-44 181.0 214 46.3
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 9.4e-44 181.0 256 45.7
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 1.2e-43 180.6 183 55.2
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 2.1e-43 179.9 215 46.5
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 3.6e-43 179.1 142 67.6
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 1.8e-42 176.8 205 50.7
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 8.2e-40 167.9 171 52.0
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 8.2e-40 167.9 209 46.9
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 1.1e-39 167.5 190 51.1
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 5.3e-39 165.2 219 45.7
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 1.6e-38 163.7 216 44.4
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 4.5e-38 162.2 218 45.9
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 4.5e-38 162.2 195 48.2
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 1.7e-37 160.2 208 44.2
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 5.0e-37 158.7 179 51.4
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 1.9e-36 156.8 182 48.4
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 6.1e-35 151.8 192 46.9
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 2.3e-34 149.8 160 49.4
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 1.3e-32 144.1 172 45.9
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 1.7e-32 143.7 211 42.7
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 6.3e-32 141.7 165 50.3
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 6.3e-32 141.7 174 46.0
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 8.2e-32 141.4 175 45.7
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 9.1e-31 137.9 142 52.1
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 3.8e-29 132.5 143 49.7
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 5.0e-29 132.1 179 42.5
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 8.5e-29 131.3 149 52.3
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 4.2e-28 129.0 206 42.7
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 2.8e-24 116.3 170 38.8
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 4.2e-20 102.4 105 54.3
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 9.2e-15 84.7 103 43.7
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 7.7e-14 81.6 78 55.1
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 2.5e-12 76.6 76 50.0
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 2.5e-12 76.6 76 50.0
SEGI_38065 Sequoiadendron giganteum HOM05D007009 ORTHO05D008451 4.7e-11 72.4 123 37.4
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 3.4e-09 66.2 145 34.5
CDE10G0656 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 5.4e-07 58.9 86 43.0
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 9.2e-07 58.2 33 69.7


User provided reference genes

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