Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009073 Carpinus fangiana HOM05D007825 ORTHO05D009693 4.9e-38 161.0 104 100.0
Haze_12107 Corylus avellana HOM05D001354 ORTHO05D007486 2.4e-32 142.1 104 88.5
Dinv31697 Davidia involucrata HOM05D007825 ORTHO05D009693 9.0e-16 87.0 104 55.8
QL07p038635 Quercus lobata HOM05D007825 ORTHO05D009693 2.0e-15 85.9 95 60.0
CiPaw.09G015200 Carya illinoinensis HOM05D007825 ORTHO05D009693 2.9e-14 82.0 94 64.9
GSVIVG01033861001 Vitis vinifera HOM05D007825 ORTHO05D009693 3.8e-14 81.6 104 51.0
Rhsim03G0074400 Rhododendron simsii HOM05D001257 ORTHO05D007181 1.4e-13 79.7 92 50.0
Lj5g0027478 Lotus japonicus HOM05D007825 ORTHO05D009693 4.6e-12 74.7 104 49.0
Actinidia07924 Actinidia chinensis HOM05D001354 ORTHO05D007486 1.0e-11 73.6 91 50.5
COL.COLO4_29710 Corchorus olitorius HOM05D007825 ORTHO05D009693 1.0e-11 73.6 87 63.2
Cpa.g.sc5.6 Carica papaya HOM05D007825 ORTHO05D009693 1.4e-11 73.2 90 51.1
TWI74G1133 Tripterygium wilfordii HOM05D007825 ORTHO05D009693 2.3e-11 72.4 89 51.7
Eucgr.A02998 Eucalyptus grandis HOM05D007825 ORTHO05D009693 3.0e-11 72.0 104 45.2
Manes.09G054200 Manihot esculenta HOM05D007825 ORTHO05D009693 3.0e-11 72.0 96 50.0
Potri.016G078700 Populus trichocarpa HOM05D007825 ORTHO05D009693 6.7e-11 70.9 90 52.2
Glyma.13G154500 Glycine max HOM05D007825 ORTHO05D009693 8.8e-11 70.5 104 46.2
Potri.006G211600 Populus trichocarpa HOM05D007825 ORTHO05D009693 8.8e-11 70.5 91 50.5
Sabra06G0163100 Salix brachista HOM05D001354 ORTHO05D007486 8.8e-11 70.5 91 48.4
Sabra16G0083000 Salix brachista HOM05D007825 ORTHO05D009693 1.1e-10 70.1 92 48.9
Cc06_g05960 Coffea canephora HOM05D007825 ORTHO05D009693 2.0e-10 69.3 86 51.2
Glyma.09G026600 Glycine max HOM05D007825 ORTHO05D009693 2.0e-10 69.3 104 56.7
Thecc.05G090800 Theobroma cacao HOM05D007825 ORTHO05D009693 2.0e-10 69.3 96 45.8
AT3G52620 Arabidopsis thaliana HOM05D007825 ORTHO05D009693 3.3e-10 68.6 87 48.3
Glyma.19G194978 Glycine max HOM05D007825 ORTHO05D009693 3.3e-10 68.6 91 50.5
Nn2g14176 Nelumbo nucifera HOM05D007825 ORTHO05D009693 3.3e-10 68.6 105 48.6
Phvul.001G191100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 3.3e-10 68.6 91 50.5
Lalb_Chr17g0338831 Lupinus albus HOM05D007825 ORTHO05D009693 4.3e-10 68.2 90 51.1
arahy.Tifrunner.gnm1.ann1.24RTVW Arachis hypogaea HOM05D007825 ORTHO05D009693 5.7e-10 67.8 91 60.4
arahy.Tifrunner.gnm1.ann1.L43FYW Arachis hypogaea HOM05D007825 ORTHO05D009693 5.7e-10 67.8 91 60.4
MD12G1027000 Malus domestica HOM05D007825 ORTHO05D009693 5.7e-10 67.8 90 48.9
Medtr1g059820 Medicago truncatula HOM05D007825 ORTHO05D009693 7.4e-10 67.4 94 46.8
Prupe.7G104600 Prunus persica HOM05D007825 ORTHO05D009693 7.4e-10 67.4 104 48.1
Sed0008191 Sechium edule HOM05D007825 ORTHO05D009693 7.4e-10 67.4 105 57.1
Phvul.003G041100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 9.7e-10 67.0 104 52.9
TAR623G0830 Trochodendron aralioides HOM05D007825 ORTHO05D009693 9.7e-10 67.0 110 54.5
Aqoxy4G02759 Aquilegia oxysepala HOM05D007825 ORTHO05D009693 1.3e-09 66.6 110 49.1
TAR633G2289 Trochodendron aralioides HOM05D007825 ORTHO05D009693 1.7e-09 66.2 107 56.1
Atru.chr2.2492 Acer truncatum HOM05D007825 ORTHO05D009693 2.2e-09 65.9 102 46.1
CARHR162440 Cardamine hirsuta HOM05D007825 ORTHO05D009693 2.8e-09 65.5 85 45.9
Lalb_Chr10g0096381 Lupinus albus HOM05D007825 ORTHO05D009693 2.8e-09 65.5 87 50.6
AL5G33400 Arabidopsis lyrata HOM05D007825 ORTHO05D009693 4.8e-09 64.7 85 44.7
Glyma.10G074000 Glycine max HOM05D007825 ORTHO05D009693 4.8e-09 64.7 104 54.8
Sp5g09670 Schrenkiella parvula HOM05D007825 ORTHO05D009693 4.8e-09 64.7 96 44.8
BcaB01g00352 Brassica carinata HOM05D007825 ORTHO05D009693 6.3e-09 64.3 89 44.9
BcaC07g39631 Brassica carinata HOM05D007825 ORTHO05D009693 6.3e-09 64.3 89 44.9
A09p45710 Brassica napus HOM05D007825 ORTHO05D009693 6.3e-09 64.3 89 44.9
C08p27910 Brassica napus HOM05D007825 ORTHO05D009693 6.3e-09 64.3 89 44.9
BolC8t50406H Brassica oleracea HOM05D007825 ORTHO05D009693 6.3e-09 64.3 89 44.9
BraA09t40032Z Brassica rapa HOM05D007825 ORTHO05D009693 6.3e-09 64.3 89 44.9
THA.LOC104799760 Tarenaya hassleriana HOM05D007825 ORTHO05D009693 6.3e-09 64.3 93 43.0
CsaV3_3G037370 Cucumis sativus L. HOM05D007825 ORTHO05D009693 1.1e-08 63.5 87 55.2
Carub.0005s1904 Capsella rubella HOM05D007825 ORTHO05D009693 1.4e-08 63.2 87 44.8
MELO3C009481.2 Cucumis melo HOM05D007825 ORTHO05D009693 1.4e-08 63.2 87 59.8
Sc07g0005630 Simmondsia chinensis HOM05D007825 ORTHO05D009693 1.4e-08 63.2 86 41.9
arahy.Tifrunner.gnm1.ann1.KBFV5H Arachis hypogaea HOM05D001354 ORTHO05D007486 1.8e-08 62.8 94 55.3
Ca_00897_v3 Cicer arietinum L. HOM05D007825 ORTHO05D009693 1.8e-08 62.8 104 44.2
Thhalv10010896m.g Eutrema salsugineum HOM05D007825 ORTHO05D009693 1.8e-08 62.8 95 43.2
TPR.G9902 Trifolium pratense HOM05D007825 ORTHO05D009693 2.4e-08 62.4 90 44.4
Lalb_Chr02g0154901 Lupinus albus HOM05D007825 ORTHO05D009693 4.1e-08 61.6 93 43.0
BcaB02g07824 Brassica carinata HOM05D007825 ORTHO05D009693 5.3e-08 61.2 87 43.7
MD14G1027100 Malus domestica HOM05D007825 ORTHO05D009693 6.9e-08 60.8 95 53.7
DCAR_013397 Daucus carota HOM05D007825 ORTHO05D009693 1.2e-07 60.1 90 40.0
arahy.Tifrunner.gnm1.ann1.S2NT6M Arachis hypogaea HOM05D007825 ORTHO05D009693 1.5e-07 59.7 86 54.7
Duzib093G1765 Durio zibethinus HOM05D007825 ORTHO05D009693 1.5e-07 59.7 96 45.8
ClCG10G018870 Citrullus lanatus HOM05D007825 ORTHO05D009693 2.0e-07 59.3 86 54.7
FAN14G3782 Fragaria x ananassa HOM05D007825 ORTHO05D009693 2.0e-07 59.3 105 46.7
Psat3g207080 Pisum sativum HOM05D007825 ORTHO05D009693 2.0e-07 59.3 115 40.0
Aqoxy2G01123 Aquilegia oxysepala HOM05D007825 ORTHO05D009693 3.4e-07 58.5 104 42.3
FAN02G3309 Fragaria x ananassa HOM05D007825 ORTHO05D009693 3.4e-07 58.5 105 46.7
FAN05G0267 Fragaria x ananassa HOM05D007825 ORTHO05D009693 3.4e-07 58.5 105 44.8
FAN14G2292 Fragaria x ananassa HOM05D007825 ORTHO05D009693 3.4e-07 58.5 105 46.7
Peaxi162Scf00404g00115 Petunia axillaris HOM05D007825 ORTHO05D009693 7.7e-07 57.4 88 47.7
PGSC0003DMG400008872 Solanum tuberosum HOM05D007825 ORTHO05D009693 7.7e-07 57.4 86 45.3
EL10Ac7g16903 Beta vulgaris HOM05D007825 ORTHO05D009693 1.0e-06 57.0 91 41.8
Solyc09g009930.2 Solanum lycopersicum HOM05D007825 ORTHO05D009693 1.0e-06 57.0 86 37.2
Sopen09g004680 Solanum pennellii HOM05D007825 ORTHO05D009693 1.0e-06 57.0 86 37.2
Dinv21196 Davidia involucrata HOM05D007825 ORTHO05D009693 1.3e-06 56.6 58 56.9
Migut.J01022 Erythranthe guttata HOM05D007825 ORTHO05D009693 2.2e-06 55.8 96 46.9
MBI17_g08331_MAGBIO Magnolia biondii HOM05D007825 ORTHO05D009693 5.0e-06 54.7 102 37.3
Nn6g34873 Nelumbo nucifera HOM05D007825 ORTHO05D009693 6.5e-06 54.3 105 49.5
RcHm_v2.0_Chr3g0474201 Rosa chinensis HOM05D007825 ORTHO05D009693 6.5e-06 54.3 104 46.2


User provided reference genes

Program Settings