Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009043 Carpinus fangiana HOM05D007453 ORTHO05D009223 4.0e-105 384.8 199 100.0
Haze_12073 Corylus avellana HOM05D007453 ORTHO05D009223 1.8e-97 359.4 228 84.6
CiPaw.05G140500 Carya illinoinensis HOM05D007453 ORTHO05D009223 4.5e-80 301.6 202 78.2
QL03p065949 Quercus lobata HOM05D007453 ORTHO05D009223 1.8e-76 289.7 207 75.8
Ciclev10032837m.g Citrus clementina HOM05D007453 ORTHO05D009223 6.3e-66 254.6 196 71.4
CiPaw.06G080300 Carya illinoinensis HOM05D007453 ORTHO05D009223 3.1e-65 252.3 163 79.1
TWI75G0120 Tripterygium wilfordii HOM05D007453 ORTHO05D009223 4.1e-65 251.9 199 69.3
Prupe.1G267100 Prunus persica HOM05D007453 ORTHO05D009223 2.0e-64 249.6 201 68.2
CsaV3_5G032280 Cucumis sativus L. HOM05D007453 ORTHO05D009223 2.9e-63 245.7 195 67.7
Atru.chr11.1862 Acer truncatum HOM05D007453 ORTHO05D009223 1.2e-61 240.4 190 67.4
COL.COLO4_36183 Corchorus olitorius HOM05D007453 ORTHO05D009223 1.4e-60 236.9 199 67.8
MELO3C012060.2 Cucumis melo HOM05D007453 ORTHO05D009223 1.5e-59 233.4 195 64.6
Lalb_Chr10g0097941 Lupinus albus HOM05D007453 ORTHO05D009223 2.6e-59 232.6 199 65.3
Gohir.D05G323400 Gossypium hirsutum HOM05D007453 ORTHO05D009223 3.3e-59 232.3 197 62.9
Cpa.g.sc1379.2 Carica papaya HOM05D007453 ORTHO05D009223 4.4e-59 231.9 204 61.3
Duzib248G0401 Durio zibethinus HOM05D007453 ORTHO05D009223 2.8e-58 229.2 198 64.6
Thecc.02G232500 Theobroma cacao HOM05D007453 ORTHO05D009223 3.7e-58 228.8 197 64.5
Ca_07373_v3 Cicer arietinum L. HOM05D007453 ORTHO05D009223 3.1e-57 225.7 197 64.0
TPR.G29466 Trifolium pratense HOM05D007453 ORTHO05D009223 4.1e-57 225.3 197 66.0
MD13G1079700 Malus domestica HOM05D007453 ORTHO05D009223 9.1e-57 224.2 208 60.1
Dinv24949 Davidia involucrata HOM05D007453 ORTHO05D009223 7.7e-56 221.1 197 61.9
FAN07G0059 Fragaria x ananassa HOM05D007453 ORTHO05D009223 7.7e-56 221.1 202 60.9
Phvul.002G067300 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 7.7e-56 221.1 197 62.9
FAN22G0202 Fragaria x ananassa HOM05D007453 ORTHO05D009223 1.0e-55 220.7 202 61.9
Gorai.009G347100 Gossypium raimondii HOM05D007453 ORTHO05D009223 1.0e-55 220.7 197 60.4
Lj2g0026857 Lotus japonicus HOM05D007453 ORTHO05D009223 1.0e-55 220.7 197 64.0
PGR119G1700 Punica granatum HOM05D007453 ORTHO05D009223 2.9e-55 219.2 206 61.2
Medtr5g038225 Medicago truncatula HOM05D007453 ORTHO05D009223 3.8e-55 218.8 197 62.9
arahy.Tifrunner.gnm1.ann1.QA8CWD Arachis hypogaea HOM05D007453 ORTHO05D009223 5.0e-55 218.4 200 60.5
FvH4_4g32080 Fragaria vesca HOM05D007453 ORTHO05D009223 6.5e-55 218.0 202 60.4
Duzib251G0796 Durio zibethinus HOM05D007453 ORTHO05D009223 1.1e-54 217.2 197 59.9
Manes.05G095900 Manihot esculenta HOM05D007453 ORTHO05D009223 1.1e-54 217.2 196 59.2
VMungo1215G3437 Vigna mungo HOM05D007453 ORTHO05D009223 1.4e-54 216.9 197 61.9
Sed0013591 Sechium edule HOM05D007453 ORTHO05D009223 1.9e-54 216.5 207 60.4
Duzib248G0483 Durio zibethinus HOM05D007453 ORTHO05D009223 3.2e-54 215.7 197 60.9
arahy.Tifrunner.gnm1.ann1.D3ZUUX Arachis hypogaea HOM05D007453 ORTHO05D009223 4.2e-54 215.3 199 60.3
Glyma.01G041651 Glycine max HOM05D007453 ORTHO05D009223 1.6e-53 213.4 198 63.1
Psat2g125360 Pisum sativum HOM05D007453 ORTHO05D009223 1.6e-53 213.4 197 63.5
ClCG05G024650 Citrullus lanatus HOM05D007453 ORTHO05D009223 2.7e-53 212.6 188 61.7
Sp1g21730 Schrenkiella parvula HOM05D007453 ORTHO05D009223 7.9e-53 211.1 208 55.8
AL1G38440 Arabidopsis lyrata HOM05D007453 ORTHO05D009223 2.3e-52 209.5 206 56.3
Actinidia08212 Actinidia chinensis HOM05D007453 ORTHO05D009223 3.0e-52 209.1 198 56.6
Sabra10G0030300 Salix brachista HOM05D007453 ORTHO05D009223 3.0e-52 209.1 152 68.4
RcHm_v2.0_Chr4g0440771 Rosa chinensis HOM05D007453 ORTHO05D009223 6.7e-52 208.0 205 60.0
Aa31LG7G8100 Aethionema arabicum HOM05D007453 ORTHO05D009223 8.8e-52 207.6 217 54.8
AT1G27050 Arabidopsis thaliana HOM05D007453 ORTHO05D009223 1.1e-51 207.2 206 55.3
BcaC06g35095 Brassica carinata HOM05D007453 ORTHO05D009223 2.0e-51 206.5 204 56.4
CARHR024860 Cardamine hirsuta HOM05D007453 ORTHO05D009223 2.0e-51 206.5 206 53.4
Gohir.A05G321200 Gossypium hirsutum HOM05D007453 ORTHO05D009223 2.6e-51 206.1 146 69.9
THA.LOC104822931 Tarenaya hassleriana HOM05D007453 ORTHO05D009223 2.6e-51 206.1 202 58.4
C07p19880 Brassica napus HOM05D007453 ORTHO05D009223 1.3e-50 203.8 204 55.9
BolC7t42507H Brassica oleracea HOM05D007453 ORTHO05D009223 1.3e-50 203.8 204 55.9
Eucgr.B03407 Eucalyptus grandis HOM05D007453 ORTHO05D009223 3.7e-50 202.2 199 57.3
vmacro16323 Vaccinium macrocarpon HOM05D007453 ORTHO05D009223 3.7e-50 202.2 201 58.7
BcaB03g14102 Brassica carinata HOM05D007453 ORTHO05D009223 8.2e-50 201.1 212 56.1
Glyma.02G022351 Glycine max HOM05D007453 ORTHO05D009223 1.1e-49 200.7 146 71.2
GSVIVG01020080001 Vitis vinifera HOM05D007453 ORTHO05D009223 1.4e-49 200.3 196 59.2
TAR481G0010 Trochodendron aralioides HOM05D007453 ORTHO05D009223 1.8e-49 199.9 199 55.8
FAN12G0628 Fragaria x ananassa HOM05D007453 ORTHO05D009223 4.1e-49 198.7 202 56.9
Potri.010G034500 Populus trichocarpa HOM05D007453 ORTHO05D009223 7.0e-49 198.0 147 68.7
Phvul.002G077900 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 7.7e-48 194.5 162 61.7
Cc11_g13560 Coffea canephora HOM05D007453 ORTHO05D009223 1.3e-47 193.7 222 53.6
Actinidia19855 Actinidia chinensis HOM05D007453 ORTHO05D009223 8.5e-47 191.0 199 54.8
HanXRQChr17g0544601 Helianthus annuus HOM05D007453 ORTHO05D009223 1.1e-46 190.7 207 52.2
CSS0012607 Camellia sinensis var. sinensis HOM05D007453 ORTHO05D009223 1.9e-46 189.9 200 57.0
Thhalv10008803m.g Eutrema salsugineum HOM05D007453 ORTHO05D009223 3.2e-46 189.1 204 53.4
ECA246G4987 Erigeron canadensis HOM05D007453 ORTHO05D009223 2.7e-45 186.0 214 50.9
MSTRG.13399 Avicennia marina HOM05D007453 ORTHO05D009223 1.4e-44 183.7 213 52.6
PGSC0003DMG400017639 Solanum tuberosum HOM05D007453 ORTHO05D009223 3.0e-44 182.6 208 51.9
A07p13280 Brassica napus HOM05D007453 ORTHO05D009223 1.5e-43 180.3 198 53.5
BraA07t29098Z Brassica rapa HOM05D007453 ORTHO05D009223 4.4e-43 178.7 198 53.0
Nitab4.5_0000679g0070 Nicotiana tabacum HOM05D007453 ORTHO05D009223 4.4e-43 178.7 226 49.6
Solyc05g006960.3 Solanum lycopersicum HOM05D007453 ORTHO05D009223 7.5e-43 177.9 208 51.0
Sopen05g002920 Solanum pennellii HOM05D007453 ORTHO05D009223 7.5e-43 177.9 208 51.0
Hund05917 Selenicereus undatus HOM05D007453 ORTHO05D009223 1.7e-42 176.8 196 52.6
DCAR_031058 Daucus carota HOM05D007453 ORTHO05D009223 2.2e-42 176.4 207 52.2
Carub.0001s2392 Capsella rubella HOM05D007453 ORTHO05D009223 2.8e-42 176.0 211 48.8
Lsat_1_v5_gn_3_49860 Lactuca sativa HOM05D007453 ORTHO05D009223 1.8e-41 173.3 181 54.1
SalBow8G2121 Salvia bowleyana HOM05D007453 ORTHO05D009223 4.5e-40 168.7 215 46.0
Rhsim12G0129600 Rhododendron simsii HOM05D007453 ORTHO05D009223 5.9e-40 168.3 251 46.2
SGA_v2.0_scaffold87G26973 Striga asiatica HOM05D007453 ORTHO05D009223 5.9e-40 168.3 216 49.5
Migut.E00119 Erythranthe guttata HOM05D007453 ORTHO05D009223 2.2e-39 166.4 224 47.3
EL10Ac6g13141 Beta vulgaris HOM05D007453 ORTHO05D009223 8.5e-39 164.5 206 49.0
MSTRG.2362 Avicennia marina HOM05D007453 ORTHO05D009223 5.5e-38 161.8 219 47.0
PSO832G2667 Papaver somniferum HOM05D007453 ORTHO05D009223 3.6e-37 159.1 206 47.6
PSO591G0176 Papaver somniferum HOM05D007453 ORTHO05D009223 8.0e-37 157.9 208 48.1
Nitab4.5_0002969g0020 Nicotiana tabacum HOM05D007453 ORTHO05D009223 1.8e-36 156.8 225 45.8
MBI01_g12858_MAGBIO Magnolia biondii HOM05D007453 ORTHO05D009223 4.0e-36 155.6 200 47.0
unitig_62.g23683 Utricularia gibba HOM05D007453 ORTHO05D009223 1.2e-35 154.1 204 47.5
Sc11g0001650 Simmondsia chinensis HOM05D007453 ORTHO05D009223 4.8e-34 148.7 201 45.3
Aqoxy3G03257 Aquilegia oxysepala HOM05D007453 ORTHO05D009223 9.1e-33 144.4 147 53.1
Peaxi162Scf00209g00516 Petunia axillaris HOM05D007453 ORTHO05D009223 9.1e-33 144.4 156 51.9
CDE05G3569 Ceratophyllum demersum HOM05D007453 ORTHO05D009223 6.1e-29 131.7 195 41.0
ATR0665G072 Amborella trichopoda HOM05D007453 ORTHO05D009223 8.8e-28 127.9 201 42.8
HPP92_001648 Vanilla planifolia HOM05D007453 ORTHO05D009223 2.8e-26 122.9 199 44.2
Dinv40682 Davidia involucrata HOM05D007453 ORTHO05D009223 4.9e-26 122.1 149 51.0
Lj6C173T12 Lonicera japonica HOM05D007453 ORTHO05D009223 2.3e-23 113.2 114 56.1
AUR62026455 Chenopodium quinoa HOM05D007453 ORTHO05D009223 1.9e-22 110.2 121 51.2
AUR62026264 Chenopodium quinoa HOM05D007453 ORTHO05D009223 5.2e-20 102.1 129 47.3
A07p13630 Brassica napus HOM05D007453 ORTHO05D009223 1.7e-18 97.1 123 45.5
Nn4g23028 Nelumbo nucifera HOM05D007453 ORTHO05D009223 9.2e-17 91.3 84 57.1
Lj6C173T11 Lonicera japonica HOM05D007453 ORTHO05D009223 1.9e-14 83.6 90 48.9
HPP92_001630 Vanilla planifolia HOM05D007453 ORTHO05D009223 3.3e-14 82.8 94 51.1


User provided reference genes

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