Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 2.4e-101 372.1 180 100.0
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 2.1e-97 359.0 180 96.1
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 4.2e-93 344.7 179 91.1
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 7.9e-92 340.5 180 89.4
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 1.0e-91 340.1 180 89.4
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 3.9e-91 338.2 180 88.3
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 6.7e-91 337.4 180 89.4
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 7.4e-90 334.0 180 87.8
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 7.4e-90 334.0 180 88.3
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 1.3e-89 333.2 180 87.2
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 6.2e-89 330.9 180 86.7
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 8.1e-89 330.5 180 87.2
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 8.1e-89 330.5 180 85.6
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 1.1e-88 330.1 180 83.9
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 87.2
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 1.8e-88 329.3 180 83.9
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 85.0
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 86.1
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 85.0
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 82.8
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 84.4
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 85.0
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 1.2e-87 326.6 180 86.7
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 1.2e-87 326.6 180 86.1
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 2.0e-87 325.9 180 83.9
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 83.3
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 5.8e-87 324.3 180 83.9
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 5.8e-87 324.3 180 83.9
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 7.6e-87 323.9 180 81.7
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.3e-86 323.2 180 83.3
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 84.4
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 84.4
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 85.6
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.3
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.3
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 82.2
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 82.2
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 83.3
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 83.9
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 84.4
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 81.7
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 81.1
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 5.5e-85 317.8 180 82.8
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 7.1e-85 317.4 180 81.7
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 9.3e-85 317.0 178 83.1
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 81.7
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 81.7
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 81.1
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 81.1
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 80.0
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 80.6
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 81.1
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 3.5e-84 315.1 180 80.6
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 3.5e-84 315.1 180 80.6
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 81.1
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 6.0e-84 314.3 180 80.6
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 6.0e-84 314.3 178 81.5
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 7.9e-84 313.9 180 80.0
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.0e-83 313.5 180 81.1
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 1.0e-83 313.5 181 80.7
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.0e-83 313.5 178 80.9
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 1.3e-83 313.2 179 81.6
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 1.8e-83 312.8 180 79.4
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 3.0e-83 312.0 180 80.0
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 8.7e-83 310.5 180 78.3
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 1.9e-82 309.3 180 78.9
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 2.5e-82 308.9 199 73.4
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 9.6e-82 307.0 178 80.9
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 4.8e-81 304.7 179 79.3
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 3.1e-80 302.0 187 75.9
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 4.0e-80 301.6 165 83.6
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 4.0e-80 301.6 180 75.0
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 1.7e-78 296.2 206 70.4
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 8.4e-78 293.9 180 77.8
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 2.5e-77 292.4 160 86.9
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 9.3e-77 290.4 203 68.0
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 6.0e-76 287.7 159 83.6
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.0e-75 287.0 174 78.7
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 6.7e-75 284.3 176 76.7
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 6.7e-75 284.3 161 81.4
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 1.5e-74 283.1 159 83.6
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 3.7e-73 278.5 160 80.6
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 8.2e-73 277.3 178 73.6
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 1.4e-72 276.6 177 71.8
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.8e-72 276.2 160 78.8
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 9.0e-72 273.9 162 78.4
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.2e-71 273.5 180 72.8
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 1.5e-71 273.1 172 79.1
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 2.6e-71 272.3 175 69.7
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 1.0e-70 270.4 156 76.9
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 1.4e-69 266.5 164 75.6
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.9e-69 266.2 167 74.9
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 3.0e-67 258.8 175 65.7
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 8.7e-67 257.3 218 63.8
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 3.3e-66 255.4 139 83.5
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 5.7e-66 254.6 153 77.8
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 8.2e-65 250.8 139 80.6
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 1.5e-63 246.5 175 62.3
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.1e-58 230.3 181 64.6
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 2.0e-58 229.6 171 60.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.7e-54 216.5 114 85.1
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 1.6e-52 209.9 121 78.5
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 3.7e-49 198.7 117 73.5
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 4.8e-49 198.4 174 50.0
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.5e-45 186.8 185 54.6
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.5e-45 186.8 185 54.6
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 1.9e-45 186.4 146 61.6
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 5.9e-39 164.9 93 78.5
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 5.0e-38 161.8 113 72.6
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 5.0e-38 161.8 174 43.1
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 4.2e-37 158.7 96 76.0
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 5.5e-37 158.3 174 44.3
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 4.7e-36 155.2 116 62.9
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 5.7e-34 148.3 91 73.6
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 1.2e-31 140.6 177 44.1
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 5.5e-29 131.7 80 77.5
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 3.5e-23 112.5 71 64.8
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 5.9e-23 111.7 99 57.6
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 2.3e-22 109.8 65 80.0
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 6.1e-20 101.7 100 57.0
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 1.7e-17 93.6 50 88.0
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 1.1e-16 90.9 56 80.4
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 1.8e-16 90.1 56 73.2
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.0e-15 86.7 46 82.6
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 3.2e-08 62.8 45 73.3
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 6.0e-07 58.5 57 54.4


User provided reference genes

Program Settings