Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 2.8e-123 445.3 222 100.0
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 4.8e-67 258.5 221 62.0
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 3.5e-65 252.3 222 65.3
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 7.7e-65 251.1 220 61.4
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 3.8e-64 248.8 222 59.9
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 8.5e-64 247.7 218 61.9
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.1e-63 247.3 222 61.7
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 3.2e-63 245.7 222 60.8
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 3.2e-63 245.7 222 59.5
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 2.1e-62 243.0 222 59.0
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 3.6e-62 242.3 219 59.4
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 8.0e-62 241.1 222 59.9
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 1.0e-61 240.7 219 60.7
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.8e-61 240.0 222 60.8
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 3.0e-61 239.2 220 59.5
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 6.8e-61 238.0 219 58.9
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 8.8e-61 237.7 219 60.7
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 2.0e-60 236.5 222 59.0
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 2.6e-60 236.1 220 58.6
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 5.7e-60 235.0 224 58.5
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 7.5e-60 234.6 220 59.1
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 9.8e-60 234.2 220 59.1
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 9.8e-60 234.2 222 55.0
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.3e-59 233.8 222 55.0
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 1.7e-59 233.4 219 58.4
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.7e-59 233.4 219 58.4
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 1.7e-59 233.4 219 57.5
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 1.7e-59 233.4 220 58.6
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 2.2e-59 233.0 222 55.0
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 2.8e-59 232.6 220 59.5
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 2.8e-59 232.6 220 58.6
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 4.9e-59 231.9 218 58.3
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 6.3e-59 231.5 217 57.6
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.4e-58 230.3 220 58.2
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.8e-58 229.9 219 58.0
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.8e-58 229.9 218 58.3
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 4.1e-58 228.8 220 56.4
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 7.0e-58 228.0 217 57.6
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 2.0e-57 226.5 217 56.7
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 3.5e-57 225.7 217 57.1
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 4.5e-57 225.3 220 56.8
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 4.5e-57 225.3 220 59.1
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.0e-56 224.2 217 55.8
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 1.0e-56 224.2 220 55.9
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 1.7e-56 223.4 220 55.9
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 2.9e-56 222.6 222 54.5
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 5.0e-56 221.9 217 56.2
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.6e-56 221.5 219 57.1
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 8.6e-56 221.1 222 54.5
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 8.6e-56 221.1 215 55.8
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 8.6e-56 221.1 221 54.8
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 8.6e-56 221.1 221 54.8
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.1e-55 220.7 221 54.3
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 1.1e-55 220.7 220 56.4
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.1e-55 220.7 222 54.1
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 1.9e-55 219.9 221 53.8
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 1.9e-55 219.9 217 55.3
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 2.5e-55 219.5 222 53.6
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 2.5e-55 219.5 222 53.6
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 2.5e-55 219.5 222 53.6
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 2.5e-55 219.5 222 53.6
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.5e-55 219.5 219 55.7
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.3e-55 219.2 220 57.3
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 4.3e-55 218.8 222 53.6
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 4.3e-55 218.8 222 53.6
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.3e-55 218.0 219 57.5
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 9.5e-55 217.6 220 55.9
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 1.6e-54 216.9 219 53.4
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.1e-54 216.5 222 53.2
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 2.1e-54 216.5 222 54.1
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 2.1e-54 216.5 222 54.1
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.1e-54 216.5 222 54.1
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 2.8e-54 216.1 219 54.3
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.7e-54 215.3 213 54.9
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 4.7e-54 215.3 217 55.8
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 6.1e-54 214.9 220 55.5
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 1.0e-53 214.2 219 53.9
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.4e-53 213.8 217 54.4
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.8e-53 213.4 225 52.9
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 2.3e-53 213.0 222 52.7
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.3e-53 213.0 229 52.8
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 2.3e-53 213.0 222 54.5
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 3.0e-53 212.6 216 54.6
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 4.0e-53 212.2 226 56.6
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 5.2e-53 211.8 219 54.3
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 6.8e-53 211.5 214 54.2
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 8.9e-53 211.1 227 53.7
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 2.0e-52 209.9 222 54.5
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.3e-51 207.2 220 52.7
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 3.7e-51 205.7 219 52.1
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 8.3e-51 204.5 222 54.5
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 8.3e-51 204.5 223 54.7
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 4.1e-50 202.2 219 52.5
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 4.1e-50 202.2 271 46.9
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 7.0e-50 201.4 217 52.5
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 1.2e-49 200.7 219 52.5
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.0e-49 199.9 200 55.0
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 2.0e-49 199.9 215 51.2
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 3.5e-49 199.1 217 51.6
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.6e-49 198.7 201 54.2
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 4.6e-49 198.7 215 50.7
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 7.8e-49 198.0 217 52.1
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 6.6e-48 194.9 222 50.0
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 8.6e-48 194.5 329 41.0
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 1.1e-47 194.1 219 49.8
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 4.3e-47 192.2 224 50.0
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 4.3e-47 192.2 213 49.8
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 5.6e-47 191.8 195 52.8
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 9.5e-47 191.0 220 49.5
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.1e-45 186.0 197 53.3
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 3.1e-45 186.0 219 49.8
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 5.2e-45 185.3 203 51.2
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 5.8e-44 181.8 212 46.2
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 9.8e-44 181.0 194 52.6
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 1.7e-43 180.3 112 77.7
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.9e-43 179.5 200 52.0
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 2.9e-43 179.5 217 47.0
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.7e-43 179.1 204 48.0
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 4.9e-43 178.7 222 47.3
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 1.2e-41 174.1 242 47.1
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 2.0e-41 173.3 112 73.2
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 1.3e-40 170.6 183 54.1
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 3.3e-39 166.0 245 44.1
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 1.2e-38 164.1 112 70.5
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 4.0e-37 159.1 208 47.1
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.3e-32 143.3 254 40.2
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 3.0e-32 142.9 223 40.8
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 6.6e-32 141.7 94 69.1
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.1e-31 141.0 103 67.0
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.6e-30 137.1 85 76.5
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 4.0e-29 132.5 214 38.8
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 8.9e-29 131.3 84 72.6
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.0e-28 130.2 81 75.3
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.8e-28 128.6 81 74.1
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 3.8e-27 125.9 87 69.0
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 1.3e-24 117.5 212 38.2
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 3.3e-23 112.8 215 36.7
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 7.3e-23 111.7 72 75.0
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 4.7e-22 109.0 68 77.9
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.0e-20 103.6 164 37.2
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 3.4e-20 102.8 218 34.4
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 2.2e-19 100.1 137 43.8
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 5.4e-18 95.5 200 33.5
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 2.1e-14 83.6 105 45.7
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 3.1e-13 79.7 135 40.7
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.2e-12 77.8 137 39.4
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 1.5e-12 77.4 64 56.2
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 5.8e-12 75.5 227 29.5
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.7e-11 73.9 45 73.3
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 2.9e-11 73.2 47 76.6
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 6.4e-11 72.0 130 40.8
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 9.3e-10 68.2 75 46.7
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.2e-09 67.8 46 67.4
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 2.7e-09 66.6 216 26.9
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.3e-08 64.3 47 59.6
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.8e-08 63.9 47 68.1
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.5e-07 60.8 46 60.9
RcHm_v2.0_Chr1g0352451 Rosa chinensis HOM05D004366 ORTHO05D005058 4.3e-07 59.3 38 73.7
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 3.6e-06 56.2 136 31.6
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 4.8e-06 55.8 122 32.8
TAR626G1697 Trochodendron aralioides HOM05D049658 ORTHO05D051498 8.1e-06 55.1 39 69.2


User provided reference genes

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