Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 8.5e-45 183.3 95 100.0
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 2.8e-40 168.3 95 92.6
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.9e-28 129.0 95 73.7
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.0e-26 123.2 95 69.5
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.7e-24 115.9 96 65.6
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 9.1e-23 110.2 95 62.1
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.3e-21 106.3 95 58.9
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.3e-21 106.3 93 60.2
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 9.4e-20 100.1 95 56.8
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 1.6e-19 99.4 95 54.7
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 3.6e-19 98.2 93 55.9
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 3.6e-19 98.2 93 55.9
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 4.7e-19 97.8 98 59.2
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 4.7e-19 97.8 97 59.8
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 1.0e-18 96.7 95 55.8
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 2.3e-18 95.5 95 53.7
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 4.0e-18 94.7 94 55.3
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 5.2e-18 94.4 96 60.4
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 8.8e-18 93.6 88 63.6
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.5e-17 92.8 95 56.8
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.5e-17 92.8 95 56.8
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.6e-17 92.0 93 54.8
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.6e-17 92.0 93 54.8
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 2.6e-17 92.0 97 60.8
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.6e-17 92.0 89 59.6
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.4e-17 91.7 96 57.3
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.7e-17 90.9 95 55.8
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 1.3e-16 89.7 95 50.5
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 8.3e-16 87.0 89 53.9
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.4e-15 86.3 96 50.0
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.8e-15 85.9 96 51.0
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.8e-15 85.9 97 54.6
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.1e-15 84.7 97 54.6
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 7.0e-15 84.0 95 55.8
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 7.0e-15 84.0 96 49.0
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 9.1e-15 83.6 97 53.6
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 2.0e-14 82.4 104 50.0
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 5.9e-14 80.9 95 51.6
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.7e-14 80.5 95 51.6
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 1.7e-13 79.3 90 50.0
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 2.3e-13 79.0 94 54.3
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.8e-13 78.2 92 50.0
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 6.5e-13 77.4 97 50.5
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 6.5e-13 77.4 96 46.9
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 8.6e-13 77.0 92 45.7
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 1.1e-12 76.6 94 48.9
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 1.5e-12 76.3 94 47.9
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 1.5e-12 76.3 94 45.7
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 1.5e-12 76.3 95 49.5
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 3.2e-12 75.1 89 50.6
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 3.2e-12 75.1 92 46.7
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 9.5e-12 73.6 95 46.3
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.2e-11 73.2 88 48.9
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 1.2e-11 73.2 88 47.7
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 1.2e-11 73.2 85 49.4
Sed0016779 Sechium edule HOM05D007096 ORTHO05D008288 1.2e-11 73.2 99 49.5
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 1.6e-11 72.8 98 46.9
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 2.1e-11 72.4 96 47.9
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 3.6e-11 71.6 94 46.8
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.7e-11 71.2 95 49.5
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 4.7e-11 71.2 94 46.8
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 6.1e-11 70.9 96 49.0
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 6.1e-11 70.9 90 45.6
PGSC0003DMG400018456 Solanum tuberosum HOM05D007096 ORTHO05D008288 6.1e-11 70.9 97 52.6
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.4e-10 69.7 94 45.7
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 1.4e-10 69.7 80 56.2
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.4e-10 69.7 89 43.8
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 1.4e-10 69.7 93 40.9
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.8e-10 69.3 89 43.8
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 2.3e-10 68.9 84 51.2
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 2.3e-10 68.9 98 49.0
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 2.3e-10 68.9 94 43.6
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 3.0e-10 68.6 108 42.6
Solyc05g007650.1 Solanum lycopersicum HOM05D007096 ORTHO05D008288 6.8e-10 67.4 97 52.6
Eucgr.G02504 Eucalyptus grandis HOM05D007096 ORTHO05D008288 8.8e-10 67.0 89 47.2
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 2.6e-09 65.5 95 46.3
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 3.4e-09 65.1 97 45.4
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 4.4e-09 64.7 98 40.8
THA.LOC104822126 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 4.4e-09 64.7 117 39.3
BraA02t06659Z Brassica rapa HOM05D009494 ORTHO05D011604 7.5e-09 63.9 111 38.7
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 7.5e-09 63.9 78 47.4
Phvul.002G085300 Phaseolus vulgaris HOM05D015099 ORTHO05D008288 9.8e-09 63.5 110 40.9
Ah.03g135070 Amaranthus hybridus HOM05D007096 ORTHO05D008288 1.3e-08 63.2 72 47.2
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 1.3e-08 63.2 96 40.6
A02p15990 Brassica napus HOM05D009494 ORTHO05D011604 3.7e-08 61.6 117 36.8
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 3.7e-08 61.6 91 41.8
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 3.7e-08 61.6 95 44.2
C06p36810 Brassica napus HOM05D009494 ORTHO05D011604 4.9e-08 61.2 115 35.7
BcaC03g15096 Brassica carinata HOM05D009494 ORTHO05D011604 6.3e-08 60.8 117 36.8
C02p26570 Brassica napus HOM05D009494 ORTHO05D011604 6.3e-08 60.8 117 36.8
BolC2t08728H Brassica oleracea HOM05D009494 ORTHO05D011604 6.3e-08 60.8 117 36.8
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 6.3e-08 60.8 89 43.8
VMungo1215G2026 Vigna mungo HOM05D015099 ORTHO05D008288 6.3e-08 60.8 110 40.0
CARHR062540 Cardamine hirsuta HOM05D009494 ORTHO05D011604 8.3e-08 60.5 114 36.0
A07p31500 Brassica napus HOM05D009494 ORTHO05D011604 1.1e-07 60.1 115 36.5
BcaC08g45881 Brassica carinata HOM05D009494 ORTHO05D011604 1.4e-07 59.7 115 35.7
BolC6t38790H Brassica oleracea HOM05D009494 ORTHO05D011604 1.4e-07 59.7 115 35.7
BraA07t30782Z Brassica rapa HOM05D009494 ORTHO05D011604 1.4e-07 59.7 115 35.7
Carub.0002s1626 Capsella rubella HOM05D009494 ORTHO05D011604 1.8e-07 59.3 116 35.3
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.8e-07 59.3 96 45.8
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 1.8e-07 59.3 88 45.5
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 3.1e-07 58.5 92 42.4
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 3.1e-07 58.5 94 40.4
Thhalv10019320m.g Eutrema salsugineum HOM05D009494 ORTHO05D011604 3.1e-07 58.5 117 37.6
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.1e-07 58.5 96 44.8
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 4.1e-07 58.2 96 40.6
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 5.4e-07 57.8 74 50.0
Aa31LG4G11160 Aethionema arabicum HOM05D009494 ORTHO05D011604 7.0e-07 57.4 121 36.4
AT1G69588 Arabidopsis thaliana HOM05D009494 ORTHO05D011604 7.0e-07 57.4 116 33.6
DCAR_027414 Daucus carota HOM05D007096 ORTHO05D008288 9.2e-07 57.0 70 44.3
BcaB05g24463 Brassica carinata HOM05D009494 ORTHO05D011604 1.2e-06 56.6 118 35.6
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 1.2e-06 56.6 93 38.7
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.6e-06 56.2 89 46.1
BcaB03g15485 Brassica carinata HOM05D009494 ORTHO05D011604 2.0e-06 55.8 116 32.8
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 3.5e-06 55.1 96 38.5
SGA_v2.0_scaffold302G47820 Striga asiatica HOM05D000180 ORTHO05D000099 3.5e-06 55.1 86 43.0
Migut.E00089 Erythranthe guttata HOM05D007096 ORTHO05D008288 5.9e-06 54.3 101 38.6
Sp5g24710 Schrenkiella parvula HOM05D009494 ORTHO05D011604 5.9e-06 54.3 117 33.3


User provided reference genes

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