Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008945 Carpinus fangiana HOM05D006399 ORTHO05D007988 0.0e+00 1156.4 555 100.0
Haze_11971 Corylus avellana HOM05D006399 ORTHO05D007988 6.5e-270 933.7 465 95.5
QL03p069077 Quercus lobata HOM05D006399 ORTHO05D007988 2.9e-238 828.6 461 86.1
QL93p1999_0143 Quercus lobata HOM05D006399 ORTHO05D007988 6.5e-238 827.4 461 85.9
CiPaw.06G087600 Carya illinoinensis HOM05D006399 ORTHO05D007988 7.7e-231 803.9 465 82.4
QL12p039367 Quercus lobata HOM05D006399 ORTHO05D007988 3.2e-229 798.5 461 83.1
QL12p039232 Quercus lobata HOM05D006399 ORTHO05D007988 7.5e-218 760.8 475 78.9
GSVIVG01005154001 Vitis vinifera HOM05D006399 ORTHO05D007988 5.1e-190 668.3 465 69.2
CiPaw.05G130800 Carya illinoinensis HOM05D006399 ORTHO05D007988 2.5e-189 666.0 463 72.1
Eucgr.G02484 Eucalyptus grandis HOM05D006399 ORTHO05D007988 5.2e-187 658.3 460 68.7
RcHm_v2.0_Chr4g0439361 Rosa chinensis HOM05D006399 ORTHO05D007988 4.3e-181 638.6 448 71.0
Atru.chr11.1742 Acer truncatum HOM05D006399 ORTHO05D007988 1.2e-178 630.6 480 66.2
Dinv07949 Davidia involucrata HOM05D006399 ORTHO05D007988 1.1e-176 624.0 468 67.5
Dinv34130 Davidia involucrata HOM05D006399 ORTHO05D007988 5.4e-176 621.7 468 67.3
FAN07G2088 Fragaria x ananassa HOM05D006399 ORTHO05D007988 2.1e-175 619.8 450 70.0
FvH4_4g30990 Fragaria vesca HOM05D006399 ORTHO05D007988 3.5e-175 619.0 450 70.4
FAN22G0994 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.3e-174 617.1 450 69.8
FAN12G2051 Fragaria x ananassa HOM05D006399 ORTHO05D007988 3.9e-174 615.5 450 70.2
TAR622G1196 Trochodendron aralioides HOM05D006399 ORTHO05D007988 5.1e-174 615.1 460 65.4
CSS0044828 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 9.0e-171 604.4 456 65.4
Dinv34129 Davidia involucrata HOM05D006399 ORTHO05D007988 1.2e-170 604.0 474 62.7
CiPaw.05G130700 Carya illinoinensis HOM05D006399 ORTHO05D007988 9.3e-168 594.3 467 61.9
CSS0033869 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 3.0e-166 589.3 481 62.4
Haze_11970 Corylus avellana HOM05D006399 ORTHO05D007988 3.0e-166 589.3 479 61.4
PGR102G2002 Punica granatum HOM05D006399 ORTHO05D007988 6.2e-164 581.6 420 67.6
Manes.01G033900 Manihot esculenta HOM05D006399 ORTHO05D007988 1.1e-163 580.9 447 66.7
Nn3g17286 Nelumbo nucifera HOM05D006399 ORTHO05D007988 1.1e-163 580.9 469 62.9
Nn3g17302 Nelumbo nucifera HOM05D006399 ORTHO05D007988 1.1e-163 580.9 469 62.9
Cfa008944 Carpinus fangiana HOM05D006399 ORTHO05D007988 1.8e-163 580.1 472 60.8
Rhsim12G0079500 Rhododendron simsii HOM05D006399 ORTHO05D007988 1.3e-161 573.9 459 63.6
Thecc.02G341500 Theobroma cacao HOM05D006399 ORTHO05D007988 3.5e-159 565.8 478 59.0
Actinidia17748 Actinidia chinensis HOM05D006399 ORTHO05D007988 3.0e-158 562.8 469 60.3
Manes.05G105200 Manihot esculenta HOM05D006399 ORTHO05D007988 6.7e-158 561.6 464 59.7
Potri.008G089800 Populus trichocarpa HOM05D006399 ORTHO05D007988 8.7e-158 561.2 467 60.0
Sabra08G0067200 Salix brachista HOM05D006399 ORTHO05D007988 1.9e-157 560.1 472 59.3
Cpa.g.sc1.57 Carica papaya HOM05D006399 ORTHO05D007988 4.3e-157 558.9 442 62.0
Duzib248G1019 Durio zibethinus HOM05D006399 ORTHO05D007988 5.7e-157 558.5 464 59.5
Oeu005762.1 Olea europaea HOM05D006399 ORTHO05D007988 2.2e-156 556.6 475 59.2
Atru.chr11.1740 Acer truncatum HOM05D006399 ORTHO05D007988 1.0e-153 547.7 492 58.7
DCAR_007171 Daucus carota HOM05D006399 ORTHO05D007988 1.3e-153 547.4 458 61.1
Gorai.013G088500 Gossypium raimondii HOM05D006399 ORTHO05D007988 3.8e-153 545.8 464 57.5
Cc00_g16610 Coffea canephora HOM05D006399 ORTHO05D007988 6.5e-153 545.0 461 59.2
Aqoxy3G00634 Aquilegia oxysepala HOM05D006399 ORTHO05D007988 1.1e-152 544.3 422 64.7
Actinidia31971 Actinidia chinensis HOM05D006399 ORTHO05D007988 1.2e-151 540.8 438 61.0
FAN07G1460 Fragaria x ananassa HOM05D006399 ORTHO05D007988 3.6e-151 539.3 431 60.3
Gohir.D13G077400 Gossypium hirsutum HOM05D006399 ORTHO05D007988 3.6e-151 539.3 467 56.7
Prupe.1G278300 Prunus persica HOM05D006399 ORTHO05D007988 4.6e-151 538.9 443 61.9
Lalb_Chr04g0255911 Lupinus albus HOM05D006399 ORTHO05D007988 3.0e-150 536.2 491 57.4
FvH4_4g30980 Fragaria vesca HOM05D006399 ORTHO05D007988 8.8e-150 534.6 472 57.0
RcHm_v2.0_Chr4g0439341 Rosa chinensis HOM05D006399 ORTHO05D007988 8.8e-150 534.6 482 56.8
FAN12G0639 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.5e-149 533.9 456 58.3
CANSAT64G0537 Cannabis sativa HOM05D006399 ORTHO05D007988 3.3e-149 532.7 427 60.7
Glyma.02G110300 Glycine max HOM05D006399 ORTHO05D007988 7.4e-149 531.6 457 58.4
Phvul.003G046500 Phaseolus vulgaris HOM05D006399 ORTHO05D007988 1.3e-148 530.8 431 59.6
Lj2g0004295 Lotus japonicus HOM05D006399 ORTHO05D007988 2.8e-148 529.6 474 56.5
Eucgr.B03205 Eucalyptus grandis HOM05D006399 ORTHO05D007988 2.4e-147 526.6 428 59.6
PSO210G1214 Papaver somniferum HOM05D006399 ORTHO05D007988 6.9e-147 525.0 456 59.0
MD16G1068900 Malus domestica HOM05D006399 ORTHO05D007988 2.0e-146 523.5 418 60.8
Glyma.01G052300 Glycine max HOM05D006399 ORTHO05D007988 5.9e-146 521.9 480 55.0
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.7e-145 520.4 362 69.6
Nitab4.5_0000145g0020 Nicotiana tabacum HOM05D006399 ORTHO05D007988 2.7e-143 513.1 470 55.7
VMungo1215G0113 Vigna mungo HOM05D006399 ORTHO05D007988 2.7e-143 513.1 474 55.3
Psat2g116280 Pisum sativum HOM05D006399 ORTHO05D007988 1.3e-140 504.2 483 53.2
TPR.G34705 Trifolium pratense HOM05D006399 ORTHO05D007988 4.8e-140 502.3 484 52.1
Ca_04827_v3 Cicer arietinum L. HOM05D006399 ORTHO05D007988 6.3e-140 501.9 436 56.7
Medtr5g042100 Medicago truncatula HOM05D006399 ORTHO05D007988 1.4e-139 500.7 488 52.3
Nitab4.5_0004661g0030 Nicotiana tabacum HOM05D006399 ORTHO05D007988 1.4e-139 500.7 402 61.9
HanXRQChr15g0476901 Helianthus annuus HOM05D006399 ORTHO05D007988 2.6e-138 496.5 495 53.5
Peaxi162Scf00222g00816 Petunia axillaris HOM05D006399 ORTHO05D007988 9.4e-136 488.0 425 56.2
Migut.L01261 Erythranthe guttata HOM05D006399 ORTHO05D007988 3.6e-135 486.1 470 55.3
PGR102G0590 Punica granatum HOM05D006399 ORTHO05D007988 4.7e-135 485.7 467 54.6
CAN.G1335.8 Capsicum annuum HOM05D006399 ORTHO05D007988 6.1e-135 485.3 470 53.6
Lsat_1_v5_gn_3_51980 Lactuca sativa HOM05D006399 ORTHO05D007988 8.0e-135 485.0 462 55.2
unitig_699.g19915 Utricularia gibba HOM05D006399 ORTHO05D007988 8.0e-135 485.0 435 56.3
THA.LOC104808694 Tarenaya hassleriana HOM05D006399 ORTHO05D007988 2.0e-133 480.3 443 57.1
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.3e-132 477.6 373 61.1
EL10Ac6g13248 Beta vulgaris HOM05D006399 ORTHO05D007988 1.8e-131 473.8 457 54.7
PGSC0003DMG400018440 Solanum tuberosum HOM05D006399 ORTHO05D007988 1.8e-131 473.8 433 55.7
GSVIVG01005153001 Vitis vinifera HOM05D006399 ORTHO05D007988 4.1e-131 472.6 466 53.2
Ah.02g129470 Amaranthus hybridus HOM05D006399 ORTHO05D007988 2.0e-130 470.3 430 54.0
Aa31LG7G8360 Aethionema arabicum HOM05D006399 ORTHO05D007988 3.5e-130 469.5 444 54.3
Sopen05g003560 Solanum pennellii HOM05D006399 ORTHO05D007988 6.5e-129 465.3 429 54.5
Solyc05g007680.1 Solanum lycopersicum HOM05D006399 ORTHO05D007988 1.1e-128 464.5 432 55.1
Sp1g22040 Schrenkiella parvula HOM05D006399 ORTHO05D007988 1.5e-128 464.2 462 53.5
AL1G38940 Arabidopsis lyrata HOM05D006399 ORTHO05D007988 1.2e-127 461.1 407 56.8
Thhalv10007591m.g Eutrema salsugineum HOM05D006399 ORTHO05D007988 2.1e-127 460.3 437 54.7
AT1G26761 Arabidopsis thaliana HOM05D006399 ORTHO05D007988 2.7e-127 459.9 407 56.8
Carub.0001s2425 Capsella rubella HOM05D006399 ORTHO05D007988 1.8e-126 457.2 407 57.7
BraA09t39516Z Brassica rapa HOM05D006399 ORTHO05D007988 1.3e-124 451.1 405 55.3
CDE06G2322 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 1.3e-124 451.1 412 56.8
SEGI_38638 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 2.2e-124 450.3 433 51.0
ATR0564G327 Amborella trichopoda HOM05D006399 ORTHO05D007988 4.8e-124 449.1 465 52.7
A09p40180 Brassica napus HOM05D006399 ORTHO05D007988 3.5e-122 443.0 431 53.6
BcaC05g26389 Brassica carinata HOM05D006399 ORTHO05D007988 7.7e-122 441.8 410 55.4
C05p24200 Brassica napus HOM05D006399 ORTHO05D007988 7.7e-122 441.8 410 55.4
BolC5t31156H Brassica oleracea HOM05D006399 ORTHO05D007988 7.7e-122 441.8 410 55.4
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.0e-121 441.4 478 49.4
CARHR025180 Cardamine hirsuta HOM05D006399 ORTHO05D007988 5.7e-117 425.6 423 52.7
Pp3c5_14870 Physcomitrium patens HOM05D006399 ORTHO05D007988 2.8e-103 380.2 434 44.2
FAN22G2397 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.3e-92 344.7 451 44.3
MSTRG.719 Avicennia marina HOM05D006399 ORTHO05D007988 1.3e-89 334.7 322 57.1
Os08g0433300 Oryza sativa ssp. japonica HOM05D006399 ORTHO05D007988 9.2e-83 312.0 400 43.0
Zm00001eb041520 Zea mays HOM05D006399 ORTHO05D007988 2.9e-76 290.4 385 42.9
AUR62032821 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.1e-75 288.5 270 54.8
SalBow2G2517 Salvia bowleyana HOM05D006399 ORTHO05D007988 9.2e-75 285.4 205 63.9
MBI05_g36409_MAGBIO Magnolia biondii HOM05D006399 ORTHO05D007988 1.3e-73 281.6 300 51.0
Ciclev10032022m.g Citrus clementina HOM05D006399 ORTHO05D007988 4.0e-70 270.0 483 37.5
Cre06.g273050 Chlamydomonas reinhardtii HOM05D006399 ORTHO05D007988 2.2e-68 264.2 400 38.8
Lj7C251T2 Lonicera japonica HOM05D006399 ORTHO05D007988 9.3e-59 232.3 309 43.0
PRCOL_00004009 Prasinoderma coloniale HOM05D006399 ORTHO05D007988 4.0e-54 216.9 389 35.2
COL.COLO4_27992 Corchorus olitorius HOM05D006399 ORTHO05D007988 6.7e-41 172.9 201 46.8
Pp3c9_20180 Physcomitrium patens HOM05D006399 ORTHO05D007988 1.9e-35 154.8 376 31.4
Lj7P254T18 Lonicera japonica HOM05D006399 ORTHO05D007988 1.4e-33 148.7 110 66.4
AagrBONN_evm.TU.Sc2ySwM_362.1792 Anthoceros agrestis HOM05D006399 ORTHO05D007988 5.7e-32 143.3 375 29.9
Pp3c11_9510 Physcomitrium patens HOM05D006399 ORTHO05D007988 1.7e-31 141.7 399 31.6
CDE02G1760 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 4.8e-31 140.2 140 55.7
SEGI_31378 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 3.1e-30 137.5 351 30.8
TWI75G1459 Tripterygium wilfordii HOM05D006399 ORTHO05D007988 3.1e-30 137.5 143 51.0
SEGI_07124 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 7.9e-26 122.9 331 33.5
Pp3c2_5840 Physcomitrium patens HOM05D006399 ORTHO05D007988 9.7e-24 115.9 267 33.0
Hma1.2p1_0235F.1_g098770 Hydrangea macrophylla HOM05D006399 ORTHO05D007988 2.1e-18 98.2 52 80.8
AagrBONN_evm.TU.Sc2ySwM_362.1561 Anthoceros agrestis HOM05D006399 ORTHO05D007988 4.8e-15 87.0 189 34.9
SGA_v2.0_scaffold109G31082 Striga asiatica HOM05D006399 ORTHO05D007988 1.5e-08 65.5 46 63.0


User provided reference genes

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