Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008919 Carpinus fangiana HOM05D007053 ORTHO05D008922 2.2e-185 652.1 332 100.0
Haze_11947 Corylus avellana HOM05D007053 ORTHO05D008922 1.6e-159 566.2 331 88.2
CiPaw.06G089300 Carya illinoinensis HOM05D007053 ORTHO05D008922 1.8e-158 562.8 330 86.1
QL03p069977 Quercus lobata HOM05D007053 ORTHO05D008922 4.7e-151 538.1 336 82.1
Manes.01G031400 Manihot esculenta HOM05D007053 ORTHO05D008922 1.9e-144 516.2 322 81.4
Dinv16695 Davidia involucrata HOM05D007053 ORTHO05D008922 2.5e-144 515.8 320 81.9
CSS0030124 Camellia sinensis var. sinensis HOM05D007053 ORTHO05D008922 1.6e-143 513.1 338 77.5
CSS0045311 Camellia sinensis var. sinensis HOM05D007053 ORTHO05D008922 3.6e-143 511.9 338 77.2
Potri.010G162900 Populus trichocarpa HOM05D007053 ORTHO05D008922 9.0e-142 507.3 321 80.1
TAR629G2828 Trochodendron aralioides HOM05D007053 ORTHO05D008922 4.4e-141 505.0 318 80.2
Atru.chr11.1705 Acer truncatum HOM05D007053 ORTHO05D008922 5.8e-141 504.6 329 77.8
Actinidia33234 Actinidia chinensis HOM05D007053 ORTHO05D008922 4.9e-140 501.5 334 76.6
Sabra10G0123900 Salix brachista HOM05D007053 ORTHO05D008922 4.9e-140 501.5 320 80.3
Duzib248G0053 Durio zibethinus HOM05D007053 ORTHO05D008922 1.4e-139 500.0 327 79.2
Aqoxy3G03518 Aquilegia oxysepala HOM05D007053 ORTHO05D008922 9.3e-139 497.3 337 75.1
Thecc.02G338500 Theobroma cacao HOM05D007053 ORTHO05D008922 1.6e-138 496.5 327 78.9
Gohir.A13G079000 Gossypium hirsutum HOM05D007053 ORTHO05D008922 4.6e-138 495.0 327 79.8
GSVIVG01001339001 Vitis vinifera HOM05D007053 ORTHO05D008922 2.3e-137 492.7 321 78.5
Gorai.013G090300 Gossypium raimondii HOM05D007053 ORTHO05D008922 6.6e-137 491.1 327 79.2
RcHm_v2.0_Chr4g0439031 Rosa chinensis HOM05D007053 ORTHO05D008922 8.7e-137 490.7 337 75.1
Solyc04g005520.3 Solanum lycopersicum HOM05D007053 ORTHO05D008922 1.1e-136 490.3 328 75.9
Sopen04g001540 Solanum pennellii HOM05D007053 ORTHO05D008922 1.9e-136 489.6 328 75.9
FAN22G2353 Fragaria x ananassa HOM05D007053 ORTHO05D008922 4.3e-136 488.4 340 74.7
FAN07G1757 Fragaria x ananassa HOM05D007053 ORTHO05D008922 9.6e-136 487.3 340 74.7
Rhsim12G0133300 Rhododendron simsii HOM05D007053 ORTHO05D008922 1.3e-135 486.9 337 75.1
Thhalv10008165m.g Eutrema salsugineum HOM05D007053 ORTHO05D008922 2.1e-135 486.1 330 74.5
FAN22G1358 Fragaria x ananassa HOM05D007053 ORTHO05D008922 2.1e-135 486.1 338 74.9
AL1G39090 Arabidopsis lyrata HOM05D007053 ORTHO05D008922 4.8e-135 485.0 321 74.5
PSO063G7037 Papaver somniferum HOM05D007053 ORTHO05D008922 4.8e-135 485.0 335 75.5
CANSAT64G1913 Cannabis sativa HOM05D007053 ORTHO05D008922 1.1e-134 483.8 335 74.3
Carub.0001s2439 Capsella rubella HOM05D007053 ORTHO05D008922 3.1e-134 482.3 330 73.0
PGR102G0611 Punica granatum HOM05D007053 ORTHO05D008922 6.9e-134 481.1 328 74.7
Sp1g22160 Schrenkiella parvula HOM05D007053 ORTHO05D008922 6.9e-134 481.1 321 73.5
FvH4_4g30620 Fragaria vesca HOM05D007053 ORTHO05D008922 2.6e-133 479.2 340 73.8
Aa31LG7G8460 Aethionema arabicum HOM05D007053 ORTHO05D008922 4.5e-133 478.4 330 72.1
MSTRG.7772 Avicennia marina HOM05D007053 ORTHO05D008922 4.5e-133 478.4 323 75.5
Eucgr.B03188 Eucalyptus grandis HOM05D007053 ORTHO05D008922 4.5e-133 478.4 333 73.0
FAN17G2706 Fragaria x ananassa HOM05D007053 ORTHO05D008922 5.8e-133 478.0 340 73.8
TPR.G19934 Trifolium pratense HOM05D007053 ORTHO05D008922 5.8e-133 478.0 318 76.1
AT1G26640 Arabidopsis thaliana HOM05D007053 ORTHO05D008922 7.6e-133 477.6 332 72.3
Psat2g127520 Pisum sativum HOM05D007053 ORTHO05D008922 9.9e-133 477.2 322 76.4
MD13G1067400 Malus domestica HOM05D007053 ORTHO05D008922 1.3e-132 476.9 323 76.2
ClCG09G022040 Citrullus lanatus HOM05D007053 ORTHO05D008922 2.9e-132 475.7 329 74.2
Ciclev10031995m.g Citrus clementina HOM05D007053 ORTHO05D008922 4.9e-132 474.9 329 74.5
BolC5t31171H Brassica oleracea HOM05D007053 ORTHO05D008922 1.1e-131 473.8 323 73.1
Ca_04893_v3 Cicer arietinum L. HOM05D007053 ORTHO05D008922 1.1e-131 473.8 318 75.8
CARHR025330 Cardamine hirsuta HOM05D007053 ORTHO05D008922 1.4e-131 473.4 322 73.6
C05p24370 Brassica napus HOM05D007053 ORTHO05D008922 1.9e-131 473.0 323 73.1
MELO3C002980.2 Cucumis melo HOM05D007053 ORTHO05D008922 3.2e-131 472.2 320 75.6
Lalb_Chr10g0098501 Lupinus albus HOM05D007053 ORTHO05D008922 3.2e-131 472.2 318 75.8
Migut.L01233 Erythranthe guttata HOM05D007053 ORTHO05D008922 4.2e-131 471.9 322 73.6
Lj3A1033T59 Lonicera japonica HOM05D007053 ORTHO05D008922 4.2e-131 471.9 339 72.0
PSO063G1507 Papaver somniferum HOM05D007053 ORTHO05D008922 4.2e-131 471.9 336 74.1
ECA233G1809 Erigeron canadensis HOM05D007053 ORTHO05D008922 5.4e-131 471.5 333 71.5
Nn4g23303 Nelumbo nucifera HOM05D007053 ORTHO05D008922 7.1e-131 471.1 318 75.2
Glyma.02G112200 Glycine max HOM05D007053 ORTHO05D008922 1.6e-130 469.9 337 73.6
Medtr5g042980 Medicago truncatula HOM05D007053 ORTHO05D008922 1.6e-130 469.9 318 75.5
A09p40050 Brassica napus HOM05D007053 ORTHO05D008922 2.1e-130 469.5 320 73.4
HanXRQChr08g0211061 Helianthus annuus HOM05D007053 ORTHO05D008922 2.1e-130 469.5 320 75.9
BcaC05g26403 Brassica carinata HOM05D007053 ORTHO05D008922 6.0e-130 468.0 323 72.4
PGSC0003DMG400002850 Solanum tuberosum HOM05D007053 ORTHO05D008922 7.9e-130 467.6 339 71.7
THA.LOC104808621 Tarenaya hassleriana HOM05D007053 ORTHO05D008922 1.0e-129 467.2 324 72.8
Lj2g0014226 Lotus japonicus HOM05D007053 ORTHO05D008922 1.3e-129 466.8 318 75.8
BraA09t39501Z Brassica rapa HOM05D007053 ORTHO05D008922 3.0e-129 465.7 320 72.8
Phvul.002G091000 Phaseolus vulgaris HOM05D007053 ORTHO05D008922 3.9e-129 465.3 318 74.8
Sc04g0007810 Simmondsia chinensis HOM05D007053 ORTHO05D008922 3.9e-129 465.3 330 72.7
Sed0004632 Sechium edule HOM05D007053 ORTHO05D008922 1.9e-128 463.0 319 74.0
Lsat_1_v5_gn_8_46861 Lactuca sativa HOM05D007053 ORTHO05D008922 2.5e-128 462.6 331 71.3
CAN.G765.42 Capsicum annuum HOM05D007053 ORTHO05D008922 4.8e-127 458.4 313 75.7
Cc11_g12440 Coffea canephora HOM05D007053 ORTHO05D008922 3.1e-126 455.7 337 69.4
VMungo1215G2121 Vigna mungo HOM05D007053 ORTHO05D008922 4.5e-125 451.8 333 70.3
Hund06137 Selenicereus undatus HOM05D007053 ORTHO05D008922 1.4e-123 446.8 312 73.1
AUR62005859 Chenopodium quinoa HOM05D007053 ORTHO05D008922 5.5e-123 444.9 335 69.3
COL.COLO4_27954 Corchorus olitorius HOM05D007053 ORTHO05D008922 2.3e-121 439.5 326 72.4
Peaxi162Scf00187g00127 Petunia axillaris HOM05D007053 ORTHO05D008922 5.1e-121 438.3 330 69.1
EL10Ac6g13278 Beta vulgaris HOM05D007053 ORTHO05D008922 7.4e-120 434.5 328 69.8
arahy.Tifrunner.gnm1.ann1.8N8AS7 Arachis hypogaea HOM05D007053 ORTHO05D008922 4.8e-119 431.8 317 71.3
Nitab4.5_0011225g0030 Nicotiana tabacum HOM05D007053 ORTHO05D008922 5.3e-118 428.3 309 72.8
FAN12G2464 Fragaria x ananassa HOM05D007053 ORTHO05D008922 2.2e-116 422.9 283 75.6
CsaV3_5G025100 Cucumis sativus L. HOM05D007053 ORTHO05D008922 3.8e-116 422.2 281 76.2
ATR0730G101 Amborella trichopoda HOM05D007053 ORTHO05D008922 4.2e-115 418.7 316 70.3
AUR62032851 Chenopodium quinoa HOM05D007053 ORTHO05D008922 7.4e-112 407.9 321 67.6
vmacro16354 Vaccinium macrocarpon HOM05D007053 ORTHO05D008922 3.4e-109 399.1 430 53.7
Nitab4.5_0000014g0210 Nicotiana tabacum HOM05D007053 ORTHO05D008922 1.7e-108 396.7 271 76.0
Prupe.1G280800 Prunus persica HOM05D007053 ORTHO05D008922 6.7e-105 384.8 320 64.7
Zm00001eb370300 Zea mays HOM05D007053 ORTHO05D008922 8.7e-105 384.4 336 64.3
TWI79G1311 Tripterygium wilfordii HOM05D007053 ORTHO05D008922 1.9e-104 383.3 321 64.8
Oeu021091.2 Olea europaea HOM05D007053 ORTHO05D008922 4.3e-104 382.1 400 55.8
Ah.02g129320 Amaranthus hybridus HOM05D007053 ORTHO05D008922 3.4e-101 372.5 347 60.8
unitig_699.g19912 Utricularia gibba HOM05D007053 ORTHO05D008922 8.5e-100 367.9 322 61.5
SGA_v2.0_scaffold16G07742 Striga asiatica HOM05D007053 ORTHO05D008922 4.7e-98 362.1 351 58.1
Pp3c3_35320 Physcomitrium patens HOM05D007053 ORTHO05D008922 1.6e-90 337.0 317 56.8
SMO116G0352 Selaginella moellendorffii HOM05D007053 ORTHO05D008922 1.1e-88 330.9 317 57.4
DCAR_030987 Daucus carota HOM05D007053 ORTHO05D008922 2.5e-83 313.2 237 68.8
Mapoly0180s0007 Marchantia polymorpha HOM05D007053 ORTHO05D008922 1.2e-82 310.8 316 53.2
MBI19_g40191_MAGBIO Magnolia biondii HOM05D007053 ORTHO05D008922 2.0e-80 303.5 204 74.5
QL03p070004 Quercus lobata HOM05D007053 ORTHO05D008922 6.5e-76 288.5 277 59.6
AagrBONN_evm.TU.Sc2ySwM_228.2378 Anthoceros agrestis HOM05D007053 ORTHO05D008922 1.3e-68 264.2 293 50.2
CBR_g29893 Chara braunii HOM05D007053 ORTHO05D008922 2.0e-56 223.8 356 39.6
Cre13.g579800 Chlamydomonas reinhardtii HOM05D007053 ORTHO05D008922 6.6e-52 208.8 301 40.5
arahy.Tifrunner.gnm1.ann1.L47GGJ Arachis hypogaea HOM05D007053 ORTHO05D008922 1.5e-48 197.6 162 65.4
CDE02G3282 Ceratophyllum demersum HOM05D007053 ORTHO05D008922 9.8e-48 194.9 194 58.8
Pp3c8_2060 Physcomitrium patens HOM05D007053 ORTHO05D008922 2.5e-43 180.3 181 54.7
SEGI_12600 Sequoiadendron giganteum HOM05D007053 ORTHO05D008922 5.6e-43 179.1 123 65.9
FAN17G3123 Fragaria x ananassa HOM05D007053 ORTHO05D008922 2.2e-39 167.2 104 79.8
CDE02G3739 Ceratophyllum demersum HOM05D007053 ORTHO05D008922 9.5e-35 151.8 106 71.7
MCO04G110 Micromonas commoda HOM05D007053 ORTHO05D008922 2.1e-21 107.5 230 35.2
SEGI_13989 Sequoiadendron giganteum HOM05D007053 ORTHO05D008922 8.7e-12 75.5 79 58.2
Lsat_1_v5_gn_1_96520 Lactuca sativa HOM05D007053 ORTHO05D008922 4.3e-11 73.2 49 71.4
Lsat_1_v5_gn_5_96721 Lactuca sativa HOM05D007053 ORTHO05D008922 1.2e-08 65.1 51 60.8
AL2G14220 Arabidopsis lyrata HOM05D011085 ORTHO05D031413 5.8e-08 62.8 79 44.3
Os01g0764600 Oryza sativa ssp. japonica HOM05D007053 ORTHO05D008922 8.4e-07 58.9 86 47.7


User provided reference genes

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