Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 3.7e-71 272.7 329 100.0
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 6.1e-66 255.4 329 97.3
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 7.4e-64 248.4 329 95.7
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 9.7e-64 248.1 371 73.6
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 3.1e-62 243.0 329 93.6
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 2.2e-60 236.9 329 93.0
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 2.9e-60 236.5 321 95.3
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 3.8e-60 236.1 329 91.5
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.4e-59 234.2 327 94.5
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 4.2e-59 232.6 330 93.6
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 4.2e-59 232.6 327 93.9
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 5.5e-59 232.3 324 93.2
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 9.4e-59 231.5 327 93.3
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.2e-58 231.1 327 93.0
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.2e-58 231.1 324 94.4
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 4.7e-58 229.2 329 91.8
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 8.0e-58 228.4 320 94.4
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 8.0e-58 228.4 323 92.3
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 8.0e-58 228.4 326 93.6
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.0e-57 228.0 326 93.3
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.0e-57 228.0 317 92.1
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.8e-57 227.3 321 93.1
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.8e-57 227.3 324 94.1
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.8e-57 227.3 324 94.1
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.3e-57 226.9 320 94.7
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.3e-57 226.9 330 93.0
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.3e-57 226.9 322 92.2
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.0e-57 226.5 329 91.8
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 3.0e-57 226.5 321 94.1
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 3.0e-57 226.5 322 94.4
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 3.0e-57 226.5 327 93.0
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 3.9e-57 226.1 331 92.7
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.9e-57 226.1 329 90.0
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 3.9e-57 226.1 318 94.3
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 5.2e-57 225.7 322 91.6
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 6.7e-57 225.3 321 93.1
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 6.7e-57 225.3 329 92.1
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 6.7e-57 225.3 320 89.7
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 8.8e-57 224.9 303 97.4
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.1e-56 224.6 324 91.7
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.5e-56 224.2 325 92.6
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.5e-56 224.2 325 92.6
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.5e-56 224.2 316 94.0
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.0e-56 223.8 324 91.7
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 5.7e-56 222.2 330 92.4
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 5.7e-56 222.2 330 92.4
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.7e-56 222.2 320 91.9
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 5.7e-56 222.2 320 92.5
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 5.7e-56 222.2 322 91.6
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 7.4e-56 221.9 330 92.1
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 9.7e-56 221.5 324 90.1
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 9.7e-56 221.5 326 92.9
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 9.7e-56 221.5 321 92.8
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 9.7e-56 221.5 324 92.9
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 2.2e-55 220.3 327 91.1
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 2.2e-55 220.3 327 91.1
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 2.2e-55 220.3 330 91.8
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.2e-55 220.3 325 89.2
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.7e-55 219.5 331 91.8
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 4.8e-55 219.2 319 90.6
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 6.3e-55 218.8 326 91.7
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 8.2e-55 218.4 322 91.3
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 8.2e-55 218.4 324 89.2
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.1e-54 218.0 320 92.2
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.1e-54 218.0 329 90.9
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 1.4e-54 217.6 329 82.4
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.8e-54 217.2 319 92.8
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.4e-54 216.9 325 91.7
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 3.1e-54 216.5 327 89.9
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.3e-54 215.7 319 91.2
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 7.0e-54 215.3 327 90.2
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 7.0e-54 215.3 325 90.8
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 9.1e-54 214.9 297 96.6
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 2.6e-53 213.4 329 89.7
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 4.5e-53 212.6 319 91.8
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 4.5e-53 212.6 337 63.8
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.9e-53 212.2 319 92.2
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 5.9e-53 212.2 321 92.2
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 5.9e-53 212.2 329 88.1
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 5.9e-53 212.2 305 92.1
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 7.7e-53 211.8 328 90.9
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 7.7e-53 211.8 319 91.8
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 7.7e-53 211.8 319 91.8
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 7.7e-53 211.8 327 90.2
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 7.7e-53 211.8 319 91.8
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 7.7e-53 211.8 319 90.3
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.0e-52 211.5 324 78.1
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.7e-52 210.7 328 90.5
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.2e-52 210.3 319 91.5
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 5.0e-52 209.1 328 90.5
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 6.5e-52 208.8 319 91.2
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 6.5e-52 208.8 319 91.2
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 6.5e-52 208.8 319 91.2
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 8.5e-52 208.4 318 91.5
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 8.5e-52 208.4 329 82.1
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 2.5e-51 206.8 323 90.7
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 3.2e-51 206.5 325 90.5
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 5.5e-51 205.7 328 89.9
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.2e-50 204.5 296 93.6
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.6e-50 204.1 312 91.3
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.6e-50 204.1 362 67.1
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.1e-50 203.8 305 92.1
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 2.1e-50 203.8 250 89.6
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.7e-50 203.4 319 90.6
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.7e-50 203.4 355 65.6
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 8.0e-50 201.8 328 77.1
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.4e-49 201.1 319 90.3
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.3e-49 200.3 319 90.3
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 5.2e-49 199.1 322 90.1
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 8.8e-49 198.4 335 74.3
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.3e-48 196.4 369 64.5
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 9.7e-48 194.9 323 87.6
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.7e-48 194.9 329 81.5
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.7e-48 194.9 329 81.5
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.7e-47 194.1 321 85.7
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.7e-47 194.1 321 85.7
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 3.7e-47 193.0 338 73.1
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 3.7e-47 193.0 316 89.9
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 6.3e-47 192.2 346 85.0
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 4.1e-46 189.5 327 88.1
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 7.0e-46 188.7 346 77.2
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.0e-46 188.7 324 84.6
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 3.5e-45 186.4 250 70.0
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.3e-44 184.5 339 82.9
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 5.0e-44 182.6 317 88.0
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 6.5e-44 182.2 345 75.1
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 1.9e-43 180.6 310 89.7
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 2.5e-43 180.3 319 86.2
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 4.2e-43 179.5 223 94.2
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 4.2e-43 179.5 305 90.8
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.2e-42 177.9 325 71.4
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 1.6e-42 177.6 328 84.8
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 3.6e-42 176.4 310 89.0
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 4.7e-42 176.0 321 54.8
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 6.1e-42 175.6 328 86.3
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 6.1e-42 175.6 104 86.5
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 8.0e-42 175.3 332 72.0
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 3.0e-41 173.3 312 83.7
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.5e-40 171.0 312 85.6
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.6e-40 170.2 326 81.6
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 3.4e-40 169.9 96 85.4
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 3.4e-40 169.9 96 85.4
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 5.7e-40 169.1 95 86.3
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 5.7e-40 169.1 250 85.6
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.5e-40 168.7 102 84.3
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 9.8e-40 168.3 104 85.6
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.3e-39 167.9 329 80.5
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 8.3e-39 165.2 104 84.6
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 5.4e-38 162.5 93 83.9
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 9.1e-38 161.8 93 83.9
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 9.1e-38 161.8 93 83.9
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.7e-36 157.5 102 78.4
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 6.6e-36 155.6 99 78.8
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 1.1e-35 154.8 253 80.2
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 8.0e-34 148.7 245 80.4
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.4e-30 137.1 73 86.3
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 5.4e-30 136.0 328 77.1
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.9e-29 132.5 276 83.3
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.9e-28 130.2 99 62.6
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 3.8e-28 129.8 304 79.3
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 7.5e-24 115.5 81 75.3
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.0e-20 102.8 65 76.9
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.6e-20 102.4 118 94.1
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.6e-19 99.4 93 59.1
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 6.2e-18 95.9 50 84.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.3e-17 94.0 64 64.1
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.2e-16 91.7 258 87.2
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 2.0e-16 90.9 118 55.9
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 4.4e-16 89.7 64 62.5
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 5.8e-16 89.4 243 72.8
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 2.1e-13 80.9 48 83.3
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 4.6e-13 79.7 55 72.7
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 3.0e-12 77.0 79 53.2
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 8.6e-12 75.5 41 87.8
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 4.3e-11 73.2 41 87.8
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 3.6e-10 70.1 41 85.4
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 1.2e-08 65.1 93 47.3
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.4e-08 63.2 40 75.0
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 9.9e-08 62.0 93 45.2
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 6.4e-07 59.3 32 87.5


User provided reference genes

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