Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008899 Carpinus fangiana HOM05D007541 ORTHO05D009404 5.9e-61 237.3 113 100.0
CiPaw.06G090800 Carya illinoinensis HOM05D007541 ORTHO05D009404 5.7e-24 114.4 119 56.3
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 2.8e-18 95.5 130 50.0
Hma1.2p1_0354F.1_g133580 Hydrangea macrophylla HOM05D007541 ORTHO05D009404 1.8e-17 92.8 117 47.9
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 3.1e-17 92.0 122 49.2
Gorai.005G144400 Gossypium raimondii HOM05D007541 ORTHO05D009404 6.8e-17 90.9 107 49.5
Nn3g17389 Nelumbo nucifera HOM05D007541 ORTHO05D009404 1.2e-16 90.1 121 53.7
QL03p070744 Quercus lobata HOM05D007541 ORTHO05D009404 1.5e-16 89.7 89 52.8
Thecc.02G334900 Theobroma cacao HOM05D007541 ORTHO05D009404 2.6e-16 89.0 113 45.1
Gohir.D02G128700 Gossypium hirsutum HOM05D007541 ORTHO05D009404 5.8e-16 87.8 107 48.6
Gohir.A03G103500 Gossypium hirsutum HOM05D007541 ORTHO05D009404 7.5e-16 87.4 69 62.3
QL03p071059 Quercus lobata HOM05D007541 ORTHO05D009404 1.3e-15 86.7 97 53.6
Sed0024262 Sechium edule HOM05D007541 ORTHO05D009404 2.9e-15 85.5 124 42.7
PGR102G1405 Punica granatum HOM05D007541 ORTHO05D009404 4.9e-15 84.7 64 65.6
Duzib248G1062 Durio zibethinus HOM05D007541 ORTHO05D009404 1.9e-14 82.8 112 44.6
Duzib268G0968 Durio zibethinus HOM05D007541 ORTHO05D009404 3.2e-14 82.0 107 45.8
Carub.0002s1591 Capsella rubella HOM05D007541 ORTHO05D009404 4.1e-14 81.6 107 46.7
Lalb_Chr17g0341081 Lupinus albus HOM05D007541 ORTHO05D009404 9.2e-14 80.5 114 43.9
Phvul.002G081400 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 2.0e-13 79.3 118 44.1
AL1G39130 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 2.7e-13 79.0 114 47.4
A09p39990 Brassica napus HOM05D007541 ORTHO05D009404 3.5e-13 78.6 116 46.6
BraA09t39497Z Brassica rapa HOM05D007541 ORTHO05D009404 3.5e-13 78.6 116 46.6
THA.LOC104822896 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 6.0e-13 77.8 115 44.3
Thhalv10019344m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 7.8e-13 77.4 102 43.1
A08p27410 Brassica napus HOM05D007541 ORTHO05D009404 1.3e-12 76.6 117 42.7
BraA08t34682Z Brassica rapa HOM05D007541 ORTHO05D009404 1.3e-12 76.6 117 42.7
MELO3C012140.2 Cucumis melo HOM05D007541 ORTHO05D009404 1.3e-12 76.6 62 61.3
AL2G28420 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 1.7e-12 76.3 100 47.0
AT1G69320 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 1.7e-12 76.3 100 46.0
Manes.01G029500 Manihot esculenta HOM05D007541 ORTHO05D009404 2.3e-12 75.9 95 47.4
TPR.G24449 Trifolium pratense HOM05D007541 ORTHO05D009404 3.0e-12 75.5 118 43.2
Potri.008G093500 Populus trichocarpa HOM05D007541 ORTHO05D009404 3.9e-12 75.1 91 47.3
Medtr4g082920 Medicago truncatula HOM05D007541 ORTHO05D009404 5.0e-12 74.7 78 52.6
Lalb_Chr05g0220081 Lupinus albus HOM05D007541 ORTHO05D009404 6.6e-12 74.3 97 43.3
TPR.G34056 Trifolium pratense HOM05D007541 ORTHO05D009404 6.6e-12 74.3 117 44.4
CARHR062200 Cardamine hirsuta HOM05D007541 ORTHO05D009404 8.6e-12 73.9 102 45.1
RcHm_v2.0_Chr4g0438701 Rosa chinensis HOM05D007541 ORTHO05D009404 1.1e-11 73.6 72 54.2
THA.LOC104805033 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 1.1e-11 73.6 123 39.8
Aa31LG7G8500 Aethionema arabicum HOM05D001658 ORTHO05D001406 1.9e-11 72.8 82 52.4
AT1G26600 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 1.9e-11 72.8 128 39.8
FAN22G1195 Fragaria x ananassa HOM05D007541 ORTHO05D009404 2.5e-11 72.4 68 55.9
Lj2g0027708 Lotus japonicus HOM05D007541 ORTHO05D009404 2.5e-11 72.4 104 45.2
Prupe.1G283100 Prunus persica HOM05D007541 ORTHO05D009404 4.3e-11 71.6 139 38.8
TPR.G741 Trifolium pratense HOM05D007541 ORTHO05D009404 4.3e-11 71.6 117 43.6
CARHR025370 Cardamine hirsuta HOM05D007541 ORTHO05D009404 5.6e-11 71.2 114 43.0
CsaV3_5G033190 Cucumis sativus L. HOM05D007541 ORTHO05D009404 5.6e-11 71.2 62 58.1
FAN17G1776 Fragaria x ananassa HOM05D007541 ORTHO05D009404 5.6e-11 71.2 68 55.9
Sopen05g007360 Solanum pennellii HOM05D007541 ORTHO05D009404 7.3e-11 70.9 112 39.3
BcaB03g11998 Brassica carinata HOM05D007541 ORTHO05D009404 9.5e-11 70.5 128 39.8
FvH4_4g30410 Fragaria vesca HOM05D007541 ORTHO05D009404 9.5e-11 70.5 68 55.9
FAN12G3046 Fragaria x ananassa HOM05D007541 ORTHO05D009404 9.5e-11 70.5 69 56.5
Lalb_Chr04g0255771 Lupinus albus HOM05D007541 ORTHO05D009404 1.2e-10 70.1 87 44.8
BcaC01g01749 Brassica carinata HOM05D007541 ORTHO05D009404 1.6e-10 69.7 109 42.2
C03p72330 Brassica napus HOM05D007541 ORTHO05D009404 1.6e-10 69.7 109 42.2
BolC3t19527H Brassica oleracea HOM05D007541 ORTHO05D009404 1.6e-10 69.7 109 42.2
TWI79G0012 Tripterygium wilfordii HOM05D007541 ORTHO05D009404 1.6e-10 69.7 83 50.6
A07p13000 Brassica napus HOM05D007541 ORTHO05D009404 2.1e-10 69.3 88 47.7
Cfa023543 Carpinus fangiana HOM05D033872 ORTHO05D125453 2.1e-10 69.3 41 85.4
C07p19450 Brassica napus HOM05D007541 ORTHO05D009404 2.8e-10 68.9 109 40.4
BolC7t42463H Brassica oleracea HOM05D007541 ORTHO05D009404 2.8e-10 68.9 109 40.4
BcaB03g14076 Brassica carinata HOM05D007541 ORTHO05D009404 3.6e-10 68.6 120 43.3
Thhalv10009109m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 3.6e-10 68.6 63 57.1
BcaB05g21930 Brassica carinata HOM05D007541 ORTHO05D009404 4.7e-10 68.2 112 42.9
BcaC05g26410 Brassica carinata HOM05D007541 ORTHO05D009404 4.7e-10 68.2 112 41.1
BolC5t31179H Brassica oleracea HOM05D007541 ORTHO05D009404 4.7e-10 68.2 112 41.1
Lj4g0006658 Lotus japonicus HOM05D007541 ORTHO05D009404 6.2e-10 67.8 113 39.8
Carub.0001s2443 Capsella rubella HOM05D007541 ORTHO05D009404 8.1e-10 67.4 112 42.0
C05p24450 Brassica napus HOM05D007541 ORTHO05D009404 1.1e-09 67.0 114 42.1
Lalb_Chr10g0098651 Lupinus albus HOM05D007541 ORTHO05D009404 1.1e-09 67.0 68 55.9
Glyma.01G056400 Glycine max HOM05D007541 ORTHO05D009404 1.4e-09 66.6 113 39.8
Glyma.20G027000 Glycine max HOM05D007541 ORTHO05D009404 1.8e-09 66.2 65 52.3
Manes.05G108300 Manihot esculenta HOM05D007541 ORTHO05D009404 1.8e-09 66.2 63 58.7
Gorai.013G091800 Gossypium raimondii HOM05D007541 ORTHO05D009404 3.1e-09 65.5 99 41.4
Lsat_1_v5_gn_4_12120 Lactuca sativa HOM05D007541 ORTHO05D009404 3.1e-09 65.5 77 51.9
BcaC05g26408 Brassica carinata HOM05D007541 ORTHO05D009404 4.0e-09 65.1 62 54.8
Glyma.02G115000 Glycine max HOM05D007541 ORTHO05D009404 4.0e-09 65.1 58 56.9
arahy.Tifrunner.gnm1.ann1.B7DCA1 Arachis hypogaea HOM05D007541 ORTHO05D009404 5.2e-09 64.7 113 41.6
BraA07t29071Z Brassica rapa HOM05D007541 ORTHO05D009404 6.8e-09 64.3 109 37.6
Phvul.002G168200 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 8.9e-09 63.9 65 52.3
VMungo1215G1351 Vigna mungo HOM05D007541 ORTHO05D009404 1.5e-08 63.2 58 53.4
DCAR_027454 Daucus carota HOM05D007541 ORTHO05D009404 2.0e-08 62.8 111 42.3
Zm00001eb152280 Zea mays HOM05D029058 ORTHO05D009404 7.5e-08 60.8 39 69.2
Potri.010G160600 Populus trichocarpa HOM05D007541 ORTHO05D009404 9.9e-08 60.5 106 41.5
Sabra10G0122200 Salix brachista HOM05D007541 ORTHO05D009404 9.9e-08 60.5 73 53.4
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 1.3e-07 60.1 44 63.6
Ciclev10033671m.g Citrus clementina HOM05D007541 ORTHO05D009404 1.7e-07 59.7 58 50.0
Lsat_1_v5_gn_8_48181 Lactuca sativa HOM05D007541 ORTHO05D009404 1.7e-07 59.7 132 36.4
Medtr5g043830 Medicago truncatula HOM05D007541 ORTHO05D009404 1.7e-07 59.7 75 49.3
arahy.Tifrunner.gnm1.ann1.USME0F Arachis hypogaea HOM05D007541 ORTHO05D009404 2.2e-07 59.3 103 42.7
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 6.4e-07 57.8 45 62.2
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 8.3e-07 57.4 46 65.2
Sopen05g007350 Solanum pennellii HOM05D007541 ORTHO05D009404 8.3e-07 57.4 104 36.5
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.4e-06 56.6 73 47.9
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 2.4e-06 55.8 39 64.1
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 2.4e-06 55.8 39 69.2
DCAR_007184 Daucus carota HOM05D007541 ORTHO05D009404 3.2e-06 55.5 56 53.6
Lalb_Chr04g0255761 Lupinus albus HOM05D007541 ORTHO05D009404 3.2e-06 55.5 102 36.3
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 5.4e-06 54.7 42 64.3
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 7.1e-06 54.3 36 69.4
Migut.D01674 Erythranthe guttata HOM05D007541 ORTHO05D009404 7.1e-06 54.3 63 46.0
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 7.1e-06 54.3 72 45.8
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 9.2e-06 53.9 36 66.7
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 9.2e-06 53.9 67 44.8
Migut.L01210 Erythranthe guttata HOM05D007541 ORTHO05D009404 9.2e-06 53.9 72 47.2
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 9.2e-06 53.9 72 45.8


User provided reference genes

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