Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 0.0e+00 1170.2 626 100.0
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 1.6e-296 1022.3 639 83.7
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.7e-287 992.3 626 81.0
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.5e-270 936.0 637 76.0
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 2.5e-270 935.3 637 76.0
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 5.1e-263 911.0 624 78.5
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 1.6e-261 906.0 623 77.2
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 2.0e-259 899.0 619 74.5
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 2.6e-259 898.7 618 74.1
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.9e-257 892.5 624 76.4
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 9.3e-257 890.2 620 77.7
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.3e-255 885.6 624 72.8
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 6.2e-253 877.5 626 74.9
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.2e-250 869.0 623 69.8
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 4.9e-250 867.8 624 74.4
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 3.2e-249 865.1 636 70.1
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 5.4e-249 864.4 624 70.5
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 2.3e-247 859.0 621 70.9
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 3.0e-247 858.6 623 70.8
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 9.6e-246 853.6 627 70.3
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 2.8e-245 852.0 626 74.4
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 2.8e-245 852.0 624 69.6
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 3.6e-245 851.7 626 70.3
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 4.8e-245 851.3 623 69.5
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 9.0e-244 847.0 624 68.3
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 5.8e-243 844.3 624 69.9
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 7.6e-243 844.0 624 69.2
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 4.9e-242 841.3 625 69.3
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 6.4e-242 840.9 625 72.0
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.4e-241 839.7 624 73.4
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 9.3e-241 837.0 627 68.7
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 2.1e-240 835.9 627 68.7
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.6e-238 827.8 619 69.1
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 8.1e-237 823.9 628 68.2
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 2.4e-236 822.4 624 66.7
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 5.3e-236 821.2 625 66.9
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 4.2e-233 811.6 626 69.3
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 4.6e-232 808.1 604 71.7
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 6.0e-232 807.7 624 69.4
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 1.0e-231 807.0 576 72.7
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 6.7e-231 804.3 630 65.7
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.5e-230 802.4 625 69.8
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 3.3e-230 802.0 625 66.6
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 4.3e-230 801.6 626 65.0
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 9.6e-230 800.4 633 69.7
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 9.6e-230 800.4 635 65.4
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 9.6e-230 800.4 625 65.6
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 6.3e-229 797.7 624 64.9
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 1.4e-228 796.6 629 65.7
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.3e-228 794.7 621 69.7
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.2e-227 793.5 576 71.5
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.5e-227 793.1 625 66.9
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 4.5e-227 791.6 620 66.1
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 2.5e-225 785.8 625 69.1
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 7.2e-225 784.3 616 65.1
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.0e-223 780.4 628 67.8
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 2.3e-223 779.2 624 63.6
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 8.7e-223 777.3 616 66.6
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 1.1e-222 776.9 619 67.5
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 1.9e-222 776.2 616 66.4
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 9.7e-222 773.9 616 64.0
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 9.7e-222 773.9 633 64.9
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 2.8e-221 772.3 604 64.9
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 2.8e-221 772.3 624 62.8
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 2.8e-221 772.3 624 63.3
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 6.3e-221 771.2 616 66.6
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 8.5e-218 760.8 624 61.4
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 8.5e-218 760.8 629 61.5
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 4.2e-217 758.4 626 63.1
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 3.6e-216 755.4 629 60.7
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.0e-215 753.8 625 62.4
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 2.3e-215 752.7 642 63.7
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 6.7e-215 751.1 620 63.2
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 8.8e-215 750.7 625 65.3
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.1e-214 750.4 628 66.7
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.1e-214 750.4 638 66.3
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 5.7e-214 748.0 625 67.0
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 9.7e-214 747.3 625 67.2
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.3e-213 746.9 628 61.0
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 2.8e-213 745.7 620 62.9
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 3.4e-211 738.8 598 64.2
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.5e-211 738.4 632 64.4
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.7e-210 736.5 630 62.2
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 2.9e-210 735.7 625 61.3
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.4e-209 733.4 620 58.9
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.8e-207 726.5 624 61.5
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.1e-206 723.8 624 64.6
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.3e-205 720.3 675 56.4
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.2e-205 719.5 654 57.6
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 4.8e-205 718.4 735 54.4
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 9.7e-198 694.1 650 57.1
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 4.1e-196 688.7 688 54.5
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 5.9e-195 684.9 652 56.3
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 5.5e-193 678.3 626 57.2
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 6.8e-191 671.4 628 62.9
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.1e-188 664.1 659 59.6
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 3.1e-188 662.5 738 49.9
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.2e-187 660.6 520 63.8
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 2.1e-184 649.8 601 61.7
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 2.0e-182 643.3 595 60.8
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 7.5e-182 641.3 607 60.1
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 4.5e-179 632.1 632 52.5
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 4.3e-177 625.5 648 51.2
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 4.7e-176 622.1 626 54.3
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 8.0e-176 621.3 603 55.7
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 1.4e-151 540.8 518 54.6
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 1.2e-131 474.6 420 59.0
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 7.4e-129 465.3 324 67.9
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 5.3e-127 459.1 339 64.6
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.8e-126 455.7 451 60.1
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.2e-124 449.5 413 58.6
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.6e-118 428.7 412 57.3
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.1e-115 420.6 367 61.3
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.2e-112 408.7 412 54.9
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.6e-110 403.7 413 55.4
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.6e-107 394.4 386 52.3
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 6.1e-107 392.5 451 53.0
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.9e-107 392.1 413 53.3
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.3e-106 390.6 391 54.5
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.5e-97 361.3 375 53.1
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 1.5e-94 351.3 205 81.0
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.0e-93 346.3 415 48.7
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 5.2e-82 309.7 562 33.3
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 7.5e-81 305.8 468 35.7
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 4.5e-78 296.6 576 35.8
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 3.8e-69 266.9 210 70.0
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.5e-65 255.0 509 30.3
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 7.0e-63 246.1 167 71.9
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.7e-62 244.2 502 29.5
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 5.0e-61 240.0 216 57.4
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 3.4e-57 227.3 168 67.3
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 1.3e-48 198.7 552 25.5
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.9e-47 194.9 237 47.7
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 7.8e-46 189.5 237 47.3
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.7e-40 170.6 135 64.4
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.1e-39 169.1 103 76.7
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 7.3e-36 156.4 109 68.8
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.4e-33 147.5 107 70.1
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.3e-29 134.8 98 67.3
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 1.5e-28 132.1 216 39.4
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 3.6e-27 127.5 89 67.4
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 4.7e-27 127.1 94 64.9
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.6e-25 121.3 80 73.8
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 6.4e-24 116.7 96 57.3
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 1.4e-23 115.5 86 62.8
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.3e-21 108.2 310 32.3
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 1.5e-20 105.5 173 41.6
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 2.8e-19 101.3 69 68.1
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 2.8e-19 101.3 69 68.1
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 2.6e-17 94.7 69 65.2
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.0e-13 81.3 45 75.6
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.0e-13 81.3 45 75.6
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 8.7e-13 79.7 48 72.9
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 2.5e-12 78.2 96 46.9
Ca_22573_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 4.5e-09 67.4 232 28.4
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 7.6e-09 66.6 53 58.5
Ca_21414_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 1.7e-08 65.5 224 28.6
Medtr8g069570 Medicago truncatula HOM05D000300 ORTHO05D008589 8.4e-08 63.2 230 27.0
Psat4g115000 Pisum sativum HOM05D000300 ORTHO05D008589 1.1e-07 62.8 233 27.0
TPR.G34661 Trifolium pratense HOM05D000300 ORTHO05D008589 1.1e-07 62.8 232 27.2
arahy.Tifrunner.gnm1.ann1.01S097 Arachis hypogaea HOM05D000300 ORTHO05D008589 7.1e-07 60.1 233 26.6
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 1.2e-06 59.3 132 28.0
arahy.Tifrunner.gnm1.ann1.42J6NL Arachis hypogaea HOM05D000300 ORTHO05D008589 1.6e-06 58.9 233 26.6
Sc04g0009400 Simmondsia chinensis HOM05D000300 ORTHO05D008589 4.6e-06 57.4 230 26.5
Phvul.003G063200 Phaseolus vulgaris HOM05D000300 ORTHO05D008589 6.0e-06 57.0 218 26.1
Actinidia15078 Actinidia chinensis HOM05D000300 ORTHO05D008589 7.9e-06 56.6 232 24.6
Aqoxy3G01101 Aquilegia oxysepala HOM05D000300 ORTHO05D008589 7.9e-06 56.6 234 25.2


User provided reference genes

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