Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 4.4e-297 1023.8 514 100.0
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 6.4e-272 940.3 487 96.3
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 3.6e-259 897.9 507 86.6
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 1.7e-256 889.0 507 86.0
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 5.6e-244 847.4 509 80.4
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 1.5e-241 839.3 507 81.9
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 2.2e-240 835.5 509 80.7
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 1.2e-238 829.7 509 79.2
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.3e-237 826.2 508 78.9
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 8.7e-237 823.5 509 79.0
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 8.7e-237 823.5 484 81.6
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.5e-236 822.8 509 79.0
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 5.7e-236 820.8 509 79.0
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 1.8e-234 815.8 509 79.0
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 3.1e-234 815.1 509 77.6
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 2.6e-233 812.0 509 77.8
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 8.5e-232 807.0 526 76.4
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 8.5e-232 807.0 504 77.6
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 8.5e-232 807.0 484 79.5
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 5.5e-231 804.3 507 77.1
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 1.2e-230 803.1 497 78.5
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 1.5e-228 796.2 509 77.0
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 5.7e-228 794.3 508 77.0
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 8.2e-227 790.4 482 78.4
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 1.1e-226 790.0 511 76.1
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 1.4e-226 789.6 507 74.6
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.5e-225 786.2 443 86.5
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 2.0e-225 785.8 509 76.4
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 3.4e-225 785.0 510 75.1
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 4.5e-225 784.6 504 76.8
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 4.5e-225 784.6 507 75.0
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 7.7e-225 783.9 508 75.2
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.0e-224 783.5 509 73.9
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.0e-224 783.5 508 74.8
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 2.2e-224 782.3 512 76.4
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.2e-224 782.3 511 74.2
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 7.2e-223 777.3 508 75.2
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 9.4e-223 776.9 509 74.7
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 3.6e-222 775.0 511 74.6
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 4.7e-222 774.6 511 74.8
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 1.0e-221 773.5 507 75.0
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.8e-221 772.7 467 80.3
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 1.8e-221 772.7 480 76.9
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.0e-221 771.9 511 74.4
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 6.7e-221 770.8 511 74.4
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 4.4e-220 768.1 507 74.0
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 4.4e-220 768.1 510 74.1
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 9.7e-220 766.9 511 74.0
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.3e-219 766.5 492 76.2
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 1.3e-219 766.5 509 74.7
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 8.2e-219 763.8 509 73.7
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 5.3e-218 761.1 478 77.4
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 5.9e-217 757.7 490 74.9
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 2.9e-216 755.4 510 72.7
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.1e-215 753.4 510 72.7
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 1.9e-215 752.7 509 74.1
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 4.2e-215 751.5 506 71.5
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 7.2e-215 750.7 502 73.3
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 2.1e-214 749.2 509 73.3
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.0e-213 745.3 506 70.6
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 1.1e-212 743.4 508 70.7
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 4.4e-212 741.5 473 75.1
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 4.4e-212 741.5 506 72.3
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.4e-212 740.7 478 74.3
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 9.7e-212 740.3 509 70.7
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 4.8e-211 738.0 512 71.5
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 1.4e-210 736.5 507 71.0
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.4e-210 735.7 507 71.8
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 1.6e-209 733.0 509 70.5
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 4.5e-209 731.5 503 71.4
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.5e-207 726.5 506 70.2
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 9.4e-207 723.8 498 70.7
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 8.0e-206 720.7 506 69.6
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 6.8e-205 717.6 498 69.7
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 8.8e-205 717.2 506 69.2
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 9.7e-204 713.8 497 69.2
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.7e-203 713.0 484 70.9
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 2.2e-203 712.6 498 69.1
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 8.3e-203 710.7 495 68.3
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 8.3e-203 710.7 483 70.8
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 3.1e-202 708.8 484 69.2
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 4.1e-202 708.4 440 77.0
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.5e-201 705.3 441 76.9
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 4.5e-201 704.9 477 70.2
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.7e-200 703.0 477 69.8
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 8.0e-198 694.1 442 74.7
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 8.0e-198 694.1 471 70.3
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 8.0e-198 694.1 471 70.3
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 8.0e-198 694.1 471 70.3
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 2.3e-197 692.6 481 70.7
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 6.8e-197 691.0 488 67.4
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.0e-196 689.5 408 82.1
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.8e-195 685.6 507 69.0
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 3.1e-194 682.2 474 71.5
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.7e-192 676.4 469 70.1
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 1.5e-191 673.3 442 75.1
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.8e-190 669.1 484 68.6
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 5.7e-188 661.4 474 67.5
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.3e-187 660.2 476 67.2
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 2.2e-187 659.4 418 76.3
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 3.7e-187 658.7 480 64.8
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 8.3e-187 657.5 469 68.7
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 4.1e-186 655.2 468 66.0
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.5e-185 652.1 385 82.1
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 3.6e-182 642.1 475 63.6
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.2e-177 627.1 482 67.6
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.2e-177 627.1 456 66.2
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.6e-177 626.7 480 66.9
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.0e-177 626.3 471 65.2
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 2.3e-176 622.9 442 69.2
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 1.9e-175 619.8 468 67.1
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 1.3e-155 553.9 471 58.0
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.4e-154 549.7 476 58.4
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 6.0e-153 545.0 320 84.4
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 1.1e-151 540.8 347 77.8
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 2.5e-151 539.7 482 57.5
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 1.1e-146 524.2 474 56.3
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.4e-141 507.3 327 74.6
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.2e-138 496.1 339 70.8
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 9.0e-133 478.0 297 80.1
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 4.5e-132 475.7 297 79.5
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 1.3e-131 474.2 498 50.0
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 1.0e-123 448.0 482 49.6
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 5.9e-116 422.2 282 69.9
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 3.0e-112 409.8 380 57.4
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 2.0e-103 380.6 250 70.8
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 2.9e-99 366.7 555 41.6
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 2.0e-95 354.0 606 38.1
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 8.8e-80 302.0 464 39.2
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 3.5e-76 290.0 458 40.4
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.3e-66 256.5 155 74.8
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 7.3e-58 229.2 211 55.0
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 5.1e-51 206.5 240 48.8
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 2.3e-48 197.6 175 58.9
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 6.6e-43 179.5 309 39.2
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 9.9e-39 165.6 108 78.7
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 9.0e-32 142.5 242 40.9
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 2.0e-31 141.4 87 74.7
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 3.4e-31 140.6 117 59.0
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 1.3e-30 138.7 99 66.7
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 2.0e-23 114.8 68 89.7
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 8.4e-22 109.4 72 68.1
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.5e-18 97.8 69 63.8
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 2.5e-18 97.8 90 53.3
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 4.1e-08 63.9 58 55.2


User provided reference genes

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