Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 0.0e+00 2627.0 1307 100.0
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 0.0e+00 2390.5 1303 92.0
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 0.0e+00 1771.1 1311 69.6
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 0.0e+00 1581.6 1299 64.8
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 0.0e+00 1220.3 1317 52.5
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 0.0e+00 1213.7 1316 52.4
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 0.0e+00 1184.5 1312 53.0
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 0.0e+00 1161.0 1305 50.3
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 0.0e+00 1087.0 1316 48.9
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 0.0e+00 1086.2 1312 48.1
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 0.0e+00 1083.2 1440 46.3
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 3.9e-310 1068.5 1321 48.8
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 5.4e-307 1058.1 1336 47.8
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 3.1e-299 1032.3 1317 47.1
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.2e-295 1020.4 1346 46.1
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 6.1e-295 1018.1 1321 46.6
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 2.9e-292 1009.2 1349 45.9
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 5.4e-291 1005.0 1319 46.8
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 2.3e-289 999.6 1257 47.8
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.3e-289 999.6 1350 45.6
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 8.1e-279 964.5 1304 43.8
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 1.2e-274 950.7 1270 46.5
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 4.6e-274 948.7 1387 41.7
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 1.6e-263 913.7 1459 39.1
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 6.4e-260 901.7 1256 43.9
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 1.1e-251 874.4 1272 42.7
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 6.9e-238 828.6 1358 39.2
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 1.6e-234 817.4 1314 40.4
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 7.4e-232 808.5 1345 38.8
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 7.4e-232 808.5 1373 39.5
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 5.9e-229 798.9 1221 41.6
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 1.1e-224 784.6 1265 41.1
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 1.8e-222 777.3 1306 39.8
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 1.0e-220 771.5 1376 38.3
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.9e-219 767.3 1628 36.1
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 3.2e-219 766.5 1307 37.9
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 1.6e-218 764.2 1282 38.5
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 7.9e-218 761.9 1362 38.3
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 2.3e-217 760.4 1319 39.3
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 1.7e-215 754.2 1307 37.7
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 1.7e-215 754.2 1302 39.5
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 7.7e-213 745.3 932 48.1
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 2.2e-212 743.8 1365 37.7
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 8.5e-212 741.9 1344 37.4
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 1.1e-211 741.5 1360 37.4
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 1.4e-211 741.1 1298 39.0
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 3.7e-207 726.5 1302 37.7
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 6.3e-207 725.7 1425 36.3
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 3.1e-206 723.4 1310 38.2
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 1.6e-205 721.1 1302 38.2
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 2.0e-205 720.7 1333 38.6
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 1.5e-203 714.5 1364 37.0
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.1e-202 710.7 963 46.0
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 4.7e-202 709.5 1299 37.2
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 4.7e-202 709.5 1503 35.2
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 1.8e-201 707.6 1309 37.5
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 8.3e-199 698.7 1353 36.1
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 1.1e-198 698.4 1367 36.6
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 2.4e-198 697.2 1357 36.8
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 2.4e-198 697.2 1357 36.8
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 7.2e-195 685.6 1371 36.3
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 9.4e-195 685.3 1379 36.2
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 2.1e-194 684.1 1242 37.8
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 1.0e-193 681.8 1312 36.3
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 7.5e-192 675.6 1358 35.8
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 1.4e-190 671.4 1349 35.7
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 1.5e-187 661.4 1325 36.7
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 4.2e-187 659.8 830 47.0
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 7.2e-187 659.1 1299 36.0
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 1.4e-185 654.8 1322 35.1
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 2.6e-184 650.6 1105 39.1
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 6.6e-180 636.0 1301 35.0
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 8.6e-180 635.6 1306 35.1
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.6e-178 631.3 1305 35.5
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.3e-172 611.7 1304 34.6
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 9.5e-171 605.5 1329 34.2
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 1.3e-167 595.1 1557 31.1
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.1e-166 590.1 960 40.3
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.1e-165 587.8 960 40.2
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 4.3e-163 580.1 1339 33.5
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 1.4e-161 575.1 1320 33.9
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 6.8e-161 572.8 1546 31.1
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 1.7e-159 568.2 1552 31.1
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 4.0e-153 547.0 670 49.7
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.2e-151 541.2 1473 31.6
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 7.8e-149 532.7 1262 33.5
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 9.6e-147 525.8 1347 31.8
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 4.2e-142 510.4 627 44.7
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 1.7e-140 505.0 1452 30.7
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 4.8e-138 496.9 1338 31.2
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 8.1e-138 496.1 1100 34.1
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 4.0e-129 467.2 1403 29.2
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 4.9e-127 460.3 1307 30.0
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 1.3e-124 452.2 1323 29.1
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 5.1e-124 450.3 1309 29.7
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 1.6e-122 445.3 1326 29.1
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 3.0e-116 424.5 1367 28.0
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 6.7e-116 423.3 686 38.8
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 8.2e-106 389.8 360 57.8
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.1e-102 379.4 285 62.1
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 6.1e-101 373.6 265 66.4
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 1.1e-99 369.4 472 44.7
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 7.0e-97 360.1 878 31.9
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 2.6e-88 331.6 466 44.6
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 4.4e-83 314.3 1329 25.9
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 6.3e-82 310.5 312 56.4
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.4e-68 266.2 208 64.9
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 5.2e-68 264.2 236 60.2
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 1.9e-62 245.7 448 33.7
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 2.5e-54 218.8 218 50.5
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.4e-49 203.0 149 67.1
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 9.2e-49 200.3 118 78.0
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 9.5e-46 190.3 125 72.8
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 6.0e-40 171.0 116 70.7
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 6.6e-39 167.5 136 60.3
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.4e-33 149.1 177 46.3
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.3e-31 143.3 345 33.3
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.7e-31 142.9 90 74.4
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 1.9e-30 139.4 435 30.3
AagrBONN_evm.TU.Sc2ySwM_362.1676 Anthoceros agrestis HOM05D004942 ORTHO05D005687 3.3e-30 138.7 419 27.4
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 6.9e-28 131.0 82 72.0
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.9e-26 124.8 76 75.0
Actinidia27213 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.9e-25 122.9 326 32.5
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 5.1e-23 114.8 69 79.7
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 6.2e-21 107.8 68 76.5
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 1.1e-20 107.1 179 36.9
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.8e-20 106.3 68 75.0
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 1.5e-19 103.2 98 53.1
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 5.8e-19 101.3 128 38.3
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 2.4e-17 95.9 78 64.1
TPR.G8934 Trifolium pratense HOM05D004942 ORTHO05D005687 2.1e-13 82.8 106 39.6
Aqoxy2G01048 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 8.1e-13 80.9 111 39.6
Oeu028721.1 Olea europaea HOM05D004942 ORTHO05D005687 1.5e-11 76.6 116 37.9
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 7.6e-11 74.3 90 36.7
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 3.8e-10 72.0 124 29.0
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 8.4e-10 70.9 64 56.2
SHI10795 Sapria himalayana HOM05D004942 ORTHO05D005687 1.3e-07 63.5 41 65.9
PSO541G2259 Papaver somniferum HOM05D001049 ORTHO05D049301 3.9e-07 62.0 94 41.5
Actinidia16149 Actinidia chinensis HOM05D057958 ORTHO05D005687 5.1e-07 61.6 127 32.3
Actinidia26534 Actinidia chinensis HOM05D057958 ORTHO05D005687 5.1e-07 61.6 127 32.3


User provided reference genes

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