Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 4.0e-147 525.0 317 100.0
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 2.5e-141 505.8 318 89.9
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 3.2e-104 382.5 324 81.8
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 5.6e-101 371.7 324 78.1
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.1e-99 367.5 324 78.1
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 6.6e-94 348.2 333 70.9
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 1.3e-92 344.0 324 69.1
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 2.1e-92 343.2 324 71.0
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.7e-89 333.6 324 73.5
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 4.6e-87 325.5 329 69.3
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 3.9e-86 322.4 326 65.6
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-82 310.5 319 63.6
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.0e-82 310.1 332 72.0
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.8e-81 305.8 319 56.4
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 4.9e-81 305.4 316 63.9
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.1e-79 300.1 337 55.2
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 4.6e-79 298.9 333 71.2
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 7.9e-79 298.1 321 62.3
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 7.9e-79 298.1 321 62.3
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.3e-78 296.6 321 62.3
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.3e-78 296.6 317 66.6
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 5.1e-78 295.4 326 62.3
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 6.7e-78 295.0 330 68.2
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.1e-77 294.3 333 66.4
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 1.1e-77 294.3 333 64.3
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 2.4e-75 286.6 317 61.2
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 3.1e-75 286.2 344 67.7
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 3.8e-73 279.3 340 58.5
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 3.2e-72 276.2 317 62.8
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.9e-69 266.9 320 58.8
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 3.3e-69 266.2 319 60.5
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 1.6e-68 263.8 342 62.9
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 2.5e-64 250.0 328 55.5
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 3.2e-64 249.6 328 58.2
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.8e-62 243.8 333 54.1
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 2.2e-60 236.9 342 59.9
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 8.2e-60 235.0 352 53.7
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 1.8e-59 233.8 331 55.6
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 6.9e-59 231.9 339 62.5
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.2e-58 231.1 335 47.8
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.0e-57 228.0 336 63.1
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 5.0e-57 225.7 338 62.4
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.0e-57 225.7 338 62.4
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 6.5e-57 225.3 308 57.1
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 8.5e-57 224.9 336 62.8
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.2e-56 223.0 259 52.9
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 7.2e-56 221.9 350 60.3
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.6e-55 220.7 305 52.5
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 3.6e-55 219.5 317 55.5
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 3.6e-55 219.5 317 55.5
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 1.8e-54 217.2 340 60.6
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 2.3e-54 216.9 317 56.2
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 2.0e-53 213.8 352 52.3
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.6e-53 213.4 313 46.3
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 5.7e-53 212.2 316 54.7
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 3.7e-52 209.5 344 51.5
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 6.3e-52 208.8 346 60.1
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 1.1e-51 208.0 333 48.3
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 2.4e-51 206.8 339 59.6
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.1e-51 206.1 311 54.0
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.9e-51 205.3 309 53.1
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 1.5e-50 204.1 359 49.9
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.0e-49 201.4 266 50.4
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 1.7e-49 200.7 337 50.4
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.9e-49 199.9 322 52.5
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 6.5e-49 198.7 323 43.3
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 4.2e-48 196.1 329 45.9
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 1.2e-47 194.5 324 42.3
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 2.7e-47 193.4 316 47.8
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 2.7e-47 193.4 316 47.8
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.6e-47 193.0 299 55.2
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 5.2e-46 189.1 319 41.4
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.3e-44 184.5 342 48.5
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 2.8e-44 183.3 300 56.7
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.8e-44 182.6 328 49.4
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 8.2e-44 181.8 325 48.9
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 1.8e-43 180.6 205 62.4
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 2.4e-43 180.3 343 39.4
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.4e-43 180.3 347 39.5
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 4.1e-43 179.5 374 47.6
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.0e-42 177.2 352 40.1
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 1.7e-41 174.1 291 46.7
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 2.2e-41 173.7 373 47.5
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 3.8e-41 172.9 346 39.3
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 6.5e-41 172.2 347 40.9
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.5e-40 171.0 346 52.9
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.5e-40 171.0 346 52.9
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.5e-40 171.0 346 52.9
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 2.7e-39 166.8 336 53.0
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 6.1e-39 165.6 332 45.8
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.4e-38 164.5 321 48.0
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 1.2e-37 161.4 323 43.3
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 1.5e-37 161.0 156 64.1
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 3.3e-37 159.8 305 51.8
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.7e-36 157.5 335 40.3
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 1.4e-35 154.5 318 46.5
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 1.4e-35 154.5 348 38.2
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 3.1e-35 153.3 321 45.8
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 7.0e-35 152.1 314 51.9
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 2.0e-34 150.6 336 46.1
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.0e-33 148.3 309 47.2
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 2.5e-32 143.7 337 48.1
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 3.2e-32 143.3 352 41.5
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 7.2e-32 142.1 288 37.5
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 7.2e-32 142.1 336 48.2
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 7.2e-32 142.1 335 49.0
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 9.4e-32 141.7 335 37.9
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 9.4e-32 141.7 318 37.7
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-31 141.4 223 57.4
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.6e-31 141.0 325 40.6
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 1.4e-30 137.9 387 46.3
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 2.3e-30 137.1 339 46.0
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 6.8e-30 135.6 271 54.6
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.8e-30 135.2 334 47.9
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 1.2e-29 134.8 345 46.7
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 2.0e-29 134.0 342 46.8
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 2.0e-29 134.0 336 47.6
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 3.4e-29 133.3 345 46.1
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 3.4e-29 133.3 345 46.1
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 4.4e-29 132.9 341 36.1
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 4.4e-29 132.9 347 45.5
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 5.7e-29 132.5 342 43.6
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 7.5e-29 132.1 354 45.2
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.7e-28 131.0 319 33.9
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 2.8e-28 130.2 325 42.2
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 3.7e-28 129.8 338 46.7
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 4.8e-28 129.4 337 47.8
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.4e-27 127.9 332 37.3
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.8e-27 127.5 337 47.8
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 2.4e-27 127.1 341 47.2
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.2e-26 124.8 347 45.5
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 1.6e-26 124.4 346 46.0
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 2.3e-25 120.6 337 46.6
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 2.3e-25 120.6 340 46.5
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 4.2e-24 116.3 332 38.9
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 5.5e-24 115.9 334 38.9
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.2e-23 114.8 320 32.2
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.6e-23 114.4 296 50.0
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.0e-22 111.7 305 33.4
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.2e-18 98.2 315 39.4
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 7.8e-18 95.5 111 52.3
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 3.8e-17 93.2 342 34.8
TAR627G0820 Trochodendron aralioides HOM05D004533 ORTHO05D005347 5.0e-17 92.8 109 52.3
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 8.6e-17 92.0 307 45.9
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 1.5e-13 81.3 289 30.1
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 4.4e-13 79.7 268 39.9
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 9.8e-13 78.6 260 40.8
TAR452G0003 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.3e-12 78.2 69 58.0
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 1.1e-11 75.1 43 81.4
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 9.2e-11 72.0 295 39.0
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 9.2e-11 72.0 328 33.2
TAR629G3385 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.0e-09 68.6 146 40.4
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 2.3e-09 67.4 324 29.9
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 4.3e-08 63.2 285 31.2
CDE05G0386 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 6.2e-07 59.3 102 37.3
Migut.L01171 Erythranthe guttata HOM05D004533 ORTHO05D005347 1.4e-06 58.2 46 65.2


User provided reference genes

Program Settings