Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 0.0e+00 1416.7 734 100.0
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 0.0e+00 1250.3 733 90.7
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.3e-241 840.1 734 65.4
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.8e-227 793.1 729 63.2
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 8.3e-132 475.3 779 44.4
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 5.4e-123 446.0 757 43.3
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 5.4e-123 446.0 747 46.1
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 7.8e-122 442.2 740 43.6
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 7.8e-122 442.2 740 43.6
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 5.1e-121 439.5 746 44.1
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.1e-119 432.2 790 41.3
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.7e-116 424.5 745 44.0
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 3.2e-115 420.2 779 42.2
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 3.5e-114 416.8 741 40.8
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 5.6e-112 409.5 751 40.7
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 7.6e-109 399.1 753 44.4
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 3.8e-108 396.7 750 42.4
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 2.1e-103 380.9 742 41.6
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 2.8e-103 380.6 747 42.4
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 4.8e-103 379.8 758 40.8
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 4.6e-98 363.2 749 41.8
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.1e-96 358.6 734 38.7
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 2.5e-96 357.5 745 37.9
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 3.3e-96 357.1 756 38.5
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 3.7e-95 353.6 775 39.1
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 2.6e-93 347.4 839 35.8
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 1.1e-91 342.0 705 40.0
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 3.7e-87 327.0 738 42.3
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.1e-86 325.5 726 35.7
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 5.3e-86 323.2 730 37.0
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.5e-85 321.6 811 35.8
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 4.5e-85 320.1 720 36.8
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 1.3e-84 318.5 634 39.6
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 1.7e-84 318.2 733 36.8
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.9e-83 314.7 727 35.8
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.2e-83 313.5 767 38.2
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 7.2e-83 312.8 727 35.8
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 9.3e-83 312.4 743 38.2
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 2.1e-82 311.2 734 36.5
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.3e-81 308.5 736 37.4
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 8.7e-81 305.8 736 37.6
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 7.4e-80 302.8 733 35.6
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 6.9e-78 296.2 756 37.0
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 6.1e-74 283.1 777 34.6
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 7.9e-74 282.7 804 34.7
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 7.9e-74 282.7 746 39.9
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.3e-73 281.2 744 39.4
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 2.6e-72 277.7 737 35.7
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.3e-71 275.4 727 39.9
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 4.8e-71 273.5 748 39.2
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 1.1e-70 272.3 743 37.6
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 6.9e-70 269.6 746 35.8
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 2.2e-68 264.6 762 37.0
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.2e-67 260.8 756 36.0
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 7.9e-66 256.1 752 38.2
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 8.8e-65 252.7 739 34.8
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 2.0e-64 251.5 724 33.3
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 7.4e-64 249.6 736 33.0
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 9.7e-64 249.2 780 35.0
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 4.8e-63 246.9 732 34.8
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 6.3e-63 246.5 733 36.2
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 1.1e-62 245.7 725 33.4
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.2e-61 242.3 758 34.8
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.6e-58 231.9 280 49.6
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 3.6e-58 230.7 743 33.6
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 4.7e-58 230.3 738 33.7
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 2.3e-57 228.0 716 33.1
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 3.0e-57 227.6 738 33.2
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 3.0e-57 227.6 731 34.2
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 2.0e-56 224.9 715 32.0
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 2.0e-56 224.9 706 31.9
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 4.4e-56 223.8 737 31.2
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 8.2e-55 219.5 746 33.6
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.4e-54 218.8 180 76.7
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 7.0e-54 216.5 351 45.6
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 2.0e-53 214.9 729 30.9
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.5e-53 213.8 348 44.5
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.5e-51 208.0 707 31.4
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 1.6e-50 205.3 755 29.9
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 1.4e-49 202.2 729 29.9
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.3e-49 201.4 700 32.0
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 3.0e-49 201.1 656 32.0
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 6.8e-49 199.9 705 28.9
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 2.6e-48 198.0 759 31.1
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 7.5e-48 196.4 727 32.6
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 2.8e-47 194.5 705 28.4
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 3.7e-47 194.1 630 31.9
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 4.8e-47 193.7 169 64.5
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 8.3e-47 193.0 733 30.4
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 2.4e-46 191.4 431 36.9
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 7.0e-46 189.9 723 30.3
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.2e-45 189.1 705 31.1
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 1.6e-45 188.7 738 30.2
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 1.6e-45 188.7 733 31.1
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 3.5e-45 187.6 719 30.2
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 7.7e-45 186.4 701 30.4
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.3e-44 185.7 740 28.0
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 2.2e-44 184.9 195 58.5
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 8.5e-44 183.0 746 31.1
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.1e-43 182.6 172 63.4
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 2.1e-42 178.3 740 29.1
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.0e-41 176.0 720 30.6
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 8.3e-39 166.4 168 58.3
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 2.4e-38 164.9 717 29.7
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.6e-37 162.2 180 58.9
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.6e-37 162.2 173 61.8
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 4.5e-37 160.6 175 53.7
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 7.7e-37 159.8 136 66.9
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 1.0e-36 159.5 881 28.3
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 2.1e-34 151.8 734 28.1
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.0e-33 149.4 103 77.7
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 1.4e-33 149.1 685 30.1
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 4.0e-33 147.5 162 62.3
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 2.6e-32 144.8 329 37.1
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 1.3e-31 142.5 619 30.0
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.3e-31 142.5 188 50.5
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 2.2e-31 141.7 171 52.6
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 1.4e-30 139.0 215 44.2
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 3.2e-30 137.9 172 48.3
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 7.0e-30 136.7 162 58.6
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 1.6e-29 135.6 711 28.8
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.0e-29 135.2 163 57.1
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 3.5e-29 134.4 683 29.0
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 7.8e-29 133.3 164 57.3
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 8.6e-28 129.8 166 59.0
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 2.5e-27 128.3 272 39.7
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 2.8e-26 124.8 153 51.0
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.8e-25 122.1 179 54.2
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 3.1e-25 121.3 420 35.2
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 4.0e-25 120.9 623 27.6
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.2e-24 119.4 322 36.3
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.5e-24 119.0 89 70.8
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 2.6e-24 118.2 99 64.6
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 5.8e-24 117.1 158 48.1
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 7.5e-24 116.7 134 61.9
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 9.8e-24 116.3 89 66.3
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.3e-23 115.9 95 64.2
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 3.2e-22 111.3 87 66.7
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 7.0e-22 110.2 73 78.1
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 2.0e-21 108.6 85 65.9
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 6.0e-21 107.1 726 26.7
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 4.7e-18 97.4 219 37.9
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 6.8e-17 93.6 103 51.5
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 5.1e-12 77.4 242 33.5
VMungo0720G2920 Vigna mungo HOM05D005042 ORTHO05D006080 7.3e-11 73.6 193 34.7
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 1.7e-07 62.4 39 82.1


User provided reference genes

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