Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 1.9e-223 778.9 396 100.0
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 2.1e-177 625.9 401 84.5
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 6.0e-169 597.8 398 79.9
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.1e-149 532.3 404 72.0
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 3.3e-143 512.3 424 67.7
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 1.0e-131 474.2 404 65.1
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 2.5e-130 469.5 437 64.1
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 1.3e-123 447.2 248 94.0
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.7e-123 446.8 414 63.5
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 1.7e-123 446.8 400 64.5
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.2e-121 440.7 405 62.0
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 3.0e-120 436.0 425 60.0
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 4.1e-117 425.6 432 58.3
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 7.0e-117 424.9 411 62.8
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 7.0e-117 424.9 411 62.8
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 7.0e-117 424.9 406 60.8
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 1.2e-116 424.1 404 61.9
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 1.2e-116 424.1 344 67.4
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 1.7e-115 420.2 408 62.0
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.7e-115 420.2 389 62.7
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 2.9e-115 419.5 406 60.8
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 1.5e-114 417.2 428 59.8
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 1.6e-113 413.7 402 60.9
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 3.0e-112 409.5 424 58.3
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 8.8e-112 407.9 426 58.9
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.5e-111 407.1 414 59.9
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 2.0e-111 406.8 410 59.5
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.0e-111 406.8 434 58.1
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.6e-111 406.4 433 57.7
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.6e-111 406.4 402 60.0
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 4.4e-111 405.6 434 57.6
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 9.7e-111 404.4 402 59.7
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.3e-110 404.1 434 57.6
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 4.1e-109 399.1 407 58.7
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 2.7e-108 396.4 407 59.5
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.7e-108 396.4 401 58.9
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 3.5e-108 396.0 420 58.1
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.9e-106 390.2 401 57.6
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 3.0e-104 382.9 426 55.6
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 7.5e-103 378.3 426 56.3
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 6.3e-102 375.2 385 56.1
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 1.0e-99 367.9 399 56.4
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.7e-99 367.1 407 54.3
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 5.0e-99 365.5 429 55.0
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 1.2e-97 360.9 389 57.6
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-97 360.5 399 56.4
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.4e-96 357.5 400 56.2
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.9e-96 354.8 401 55.9
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 4.1e-93 345.9 399 57.1
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 1.2e-92 344.4 373 57.6
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 2.7e-92 343.2 420 54.8
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 4.0e-88 329.3 414 52.7
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.9e-86 323.2 379 53.3
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.2e-84 317.8 399 49.1
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.9e-82 310.5 408 51.5
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.0e-81 305.1 405 52.1
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 8.0e-81 305.1 405 52.1
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 1.4e-80 304.3 433 48.5
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 1.4e-80 304.3 402 48.3
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.8e-80 303.9 316 56.6
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.8e-80 303.9 383 51.2
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.8e-80 303.9 383 51.2
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.8e-80 303.9 410 47.1
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.0e-80 302.8 383 51.7
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 8.3e-78 295.0 441 45.8
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 4.1e-77 292.7 411 45.7
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.2e-76 291.2 391 45.5
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 1.7e-75 287.3 410 49.3
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 1.7e-75 287.3 259 66.0
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.9e-75 286.2 380 49.7
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.5e-74 284.3 432 46.5
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 1.6e-73 280.8 383 46.7
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 1.1e-72 278.1 434 44.5
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.8e-72 277.3 405 44.2
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 3.1e-72 276.6 394 47.2
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.5e-71 274.2 405 48.6
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 5.8e-71 272.3 397 43.6
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.5e-66 257.7 401 43.1
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 2.8e-65 253.4 412 45.1
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.8e-64 250.8 400 43.0
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 3.2e-61 240.0 403 43.7
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.2e-60 238.0 404 44.1
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 4.6e-60 236.1 418 43.1
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.0e-59 233.4 388 42.8
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.0e-59 233.4 388 42.8
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 9.6e-58 228.4 414 43.7
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.3e-57 228.0 396 43.2
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 5.3e-56 222.6 381 43.0
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.7e-54 217.6 395 42.3
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 9.3e-53 211.8 379 38.5
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 4.6e-52 209.5 382 38.5
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.3e-51 208.0 395 41.8
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.3e-51 208.0 459 37.5
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.3e-51 207.2 481 38.0
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 3.9e-51 206.5 379 38.3
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.9e-50 204.1 393 41.7
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.9e-50 204.1 393 41.7
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 4.3e-50 203.0 426 38.5
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 4.8e-49 199.5 476 35.1
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 1.1e-48 198.4 410 39.0
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 5.3e-48 196.1 417 37.9
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 6.9e-48 195.7 124 84.7
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.5e-47 194.5 394 39.8
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 5.8e-47 192.6 402 36.3
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 5.8e-47 192.6 410 39.8
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 5.8e-47 192.6 410 39.8
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.1e-45 188.3 420 38.8
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 1.4e-45 188.0 472 37.3
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 2.7e-44 183.7 390 39.0
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 2.7e-44 183.7 436 35.8
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.7e-44 183.7 420 37.4
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 4.6e-44 183.0 434 35.3
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 5.1e-43 179.5 381 37.8
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 1.5e-42 177.9 386 37.0
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 6.2e-41 172.6 413 35.6
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 6.2e-41 172.6 431 35.0
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-40 171.4 431 35.0
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.4e-40 171.4 267 43.4
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 3.1e-40 170.2 431 35.3
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 5.3e-40 169.5 303 41.6
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.0e-38 165.2 390 37.2
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 4.9e-38 162.9 472 34.3
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 4.2e-37 159.8 435 34.5
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 2.1e-36 157.5 321 40.5
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.3e-35 154.8 387 33.3
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 5.1e-35 152.9 471 34.2
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 1.5e-34 151.4 393 36.1
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 5.7e-34 149.4 393 35.9
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 5.7e-34 149.4 403 33.5
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 9.6e-34 148.7 379 34.3
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 2.8e-33 147.1 187 44.4
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 3.7e-33 146.7 310 40.6
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 2.4e-32 144.1 232 44.8
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 3.4e-31 140.2 387 36.4
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.5e-31 139.8 385 34.0
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 4.5e-31 139.8 387 34.4
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 5.8e-31 139.4 387 34.4
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.0e-30 138.7 419 33.4
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 1.3e-30 138.3 347 36.9
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.8e-30 136.7 301 40.2
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 3.2e-29 133.7 225 44.9
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 4.2e-29 133.3 435 32.4
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 4.2e-29 133.3 245 43.7
Haze_13037 Corylus avellana HOM05D004568 ORTHO05D005343 1.3e-27 128.3 72 91.7
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 2.8e-25 120.6 435 31.7
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 5.3e-24 116.3 438 29.9
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.2e-21 106.7 423 29.8
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.6e-20 103.2 168 44.0
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 7.9e-20 102.4 108 59.3
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 5.1e-19 99.8 62 80.6
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.5e-18 98.2 255 33.3
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 1.7e-17 94.7 140 45.0
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 2.8e-17 94.0 183 37.2
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 3.8e-14 83.6 128 39.8
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 2.7e-12 77.4 173 35.8
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 4.7e-12 76.6 137 38.0
Cfa014422 Carpinus fangiana HOM05D004568 ORTHO05D005343 5.1e-11 73.2 141 46.8
Haze_13036 Corylus avellana HOM05D055338 ORTHO05D005343 8.8e-11 72.4 60 70.0
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 5.7e-10 69.7 139 37.4
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 6.3e-09 66.2 144 32.6
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 5.0e-06 56.6 181 27.1


User provided reference genes

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