Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 2.7e-91 338.6 163 100.0
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 1.2e-86 323.2 163 95.1
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 3.7e-64 248.4 158 73.4
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.4e-63 246.5 158 75.3
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 2.0e-62 242.7 147 77.6
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.6e-62 242.3 151 77.5
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 3.4e-62 241.9 151 76.8
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 3.4e-62 241.9 146 78.1
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 2.9e-61 238.8 158 72.2
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.1e-60 236.9 151 72.2
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-60 236.9 151 72.2
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.5e-60 235.7 151 71.5
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.4e-60 233.8 151 71.5
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 9.4e-60 233.8 154 72.7
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.6e-59 233.0 153 73.9
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 2.1e-59 232.6 144 74.3
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 3.6e-59 231.9 157 71.3
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.8e-58 229.6 158 70.9
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 3.0e-58 228.8 152 71.1
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 3.9e-58 228.4 157 68.8
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 3.9e-58 228.4 157 71.3
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 6.7e-58 227.6 161 67.1
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 8.8e-58 227.3 158 67.7
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.6e-57 225.7 147 72.8
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 4.4e-57 224.9 157 68.2
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.7e-56 223.0 144 70.1
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.2e-56 222.6 186 59.1
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.8e-56 222.2 147 71.4
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 2.8e-56 222.2 147 71.4
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 3.7e-56 221.9 160 68.1
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 6.3e-56 221.1 161 64.6
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.1e-55 220.3 158 66.5
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 1.4e-55 219.9 144 70.1
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 1.8e-55 219.5 144 70.1
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 2.4e-55 219.2 156 66.0
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 5.3e-55 218.0 144 69.4
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 1.2e-54 216.9 156 64.7
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 1.2e-54 216.9 147 70.1
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 1.5e-54 216.5 144 69.4
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 2.0e-54 216.1 145 68.3
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 2.6e-54 215.7 157 67.5
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 5.9e-54 214.5 144 68.8
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 1.3e-53 213.4 149 70.5
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 1.3e-53 213.4 155 65.8
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 1.7e-53 213.0 144 68.1
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.7e-53 213.0 146 69.2
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 1.7e-53 213.0 156 65.4
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.9e-53 212.2 148 69.6
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 3.8e-53 211.8 143 68.5
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 6.5e-53 211.1 150 66.7
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 6.5e-53 211.1 150 66.7
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 6.5e-53 211.1 144 68.1
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 8.5e-53 210.7 145 64.8
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.1e-52 210.3 149 66.4
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 2.5e-52 209.1 150 62.7
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 9.4e-52 207.2 144 67.4
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 9.4e-52 207.2 144 67.4
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 9.4e-52 207.2 144 67.4
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.1e-51 206.1 162 62.3
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 2.1e-51 206.1 151 64.2
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 2.1e-51 206.1 158 60.1
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 2.1e-51 206.1 148 68.9
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 3.6e-51 205.3 152 65.1
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 3.6e-51 205.3 147 65.3
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 4.7e-51 204.9 156 65.4
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 6.1e-51 204.5 144 66.7
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 6.1e-51 204.5 144 66.0
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.0e-51 204.1 148 62.2
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.0e-51 204.1 148 62.2
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.0e-50 203.8 149 67.1
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 1.4e-50 203.4 153 63.4
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 1.4e-50 203.4 151 64.2
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-50 203.4 153 63.4
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-50 203.4 151 64.2
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 2.3e-50 202.6 151 65.6
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 3.0e-50 202.2 149 60.4
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.9e-50 201.8 150 64.7
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 8.8e-50 200.7 151 59.6
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 8.8e-50 200.7 146 65.1
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.1e-49 200.3 145 62.1
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.1e-49 200.3 147 60.5
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 1.5e-49 199.9 157 60.5
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.5e-49 199.9 140 67.9
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.0e-49 199.5 152 64.5
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 2.0e-49 199.5 145 62.1
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 2.0e-49 199.5 149 65.1
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 4.4e-49 198.4 153 61.4
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 4.4e-49 198.4 151 66.2
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 5.7e-49 198.0 153 63.4
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 9.7e-49 197.2 153 63.4
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.2e-48 196.1 148 60.8
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.2e-48 196.1 156 64.7
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 2.8e-48 195.7 151 60.3
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 2.8e-48 195.7 151 60.3
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 4.8e-48 194.9 145 61.4
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 6.3e-48 194.5 160 61.9
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 8.2e-48 194.1 137 66.4
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.4e-47 193.4 147 63.9
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 1.8e-47 193.0 143 64.3
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 2.4e-47 192.6 157 58.6
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 2.4e-47 192.6 152 62.5
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 3.1e-47 192.2 147 63.3
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 5.3e-47 191.4 144 58.3
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 7.0e-47 191.0 157 58.0
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-46 190.3 149 61.7
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-46 190.3 149 62.4
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.6e-46 189.9 148 57.4
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.6e-46 189.9 148 60.8
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.6e-46 189.9 148 60.8
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 2.0e-46 189.5 149 62.4
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 7.7e-46 187.6 151 56.3
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 2.9e-45 185.7 148 60.1
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 3.8e-45 185.3 146 59.6
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 5.0e-45 184.9 159 54.7
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 5.0e-45 184.9 159 54.7
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 3.2e-44 182.2 146 60.3
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 9.4e-44 180.6 99 78.8
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.7e-43 179.1 146 55.5
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 6.1e-43 177.9 143 55.9
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.4e-42 176.8 146 57.5
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.8e-42 176.4 152 57.2
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 1.8e-42 176.4 151 60.3
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 3.0e-42 175.6 139 58.3
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 4.0e-42 175.3 145 54.5
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 8.8e-42 174.1 148 58.1
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-41 173.3 212 46.2
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 1.3e-40 170.2 157 56.1
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.2e-40 169.5 149 54.4
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 2.8e-40 169.1 151 51.7
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.8e-40 168.3 157 53.5
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 6.3e-40 167.9 150 58.0
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 8.3e-40 167.5 158 50.6
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 1.1e-39 167.2 156 51.9
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.8e-39 166.4 149 55.7
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 4.1e-39 165.2 146 53.4
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.7e-38 162.5 146 52.1
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 3.5e-38 162.2 150 53.3
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 3.5e-38 162.2 145 57.9
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 3.5e-38 162.2 153 52.9
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 2.9e-37 159.1 146 47.3
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 5.0e-37 158.3 125 65.6
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 7.2e-36 154.5 147 51.0
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 7.2e-36 154.5 156 50.6
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 4.7e-35 151.8 144 54.2
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 8.0e-35 151.0 97 68.0
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.3e-32 143.7 123 60.2
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.1e-31 140.6 146 47.9
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 2.4e-31 139.4 153 43.1
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 1.2e-30 137.1 144 46.5
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 1.0e-29 134.0 145 45.5
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.0e-29 134.0 149 48.3
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 2.9e-29 132.5 149 47.7
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 4.2e-28 128.6 135 51.9
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.7e-22 109.4 71 64.8
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 8.6e-21 104.4 79 65.8
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 4.3e-20 102.1 141 41.8
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.6e-19 99.0 126 40.5
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 1.4e-18 97.1 94 55.3
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 1.8e-18 96.7 51 72.5
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 2.3e-18 96.3 142 38.7
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.3e-16 90.5 112 45.5
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 2.9e-16 89.4 99 49.5
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 3.7e-16 89.0 50 68.0
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.2e-15 84.3 97 51.5
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 1.3e-13 80.5 73 60.3
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.3e-13 79.7 70 58.6
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.4e-10 70.5 40 65.0
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 8.9e-10 67.8 84 45.2
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 4.4e-09 65.5 71 50.7
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 1.1e-07 60.8 42 71.4


User provided reference genes

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