Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 1.2e-146 523.9 417 100.0
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 4.0e-107 392.5 417 85.6
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 2.8e-100 369.8 466 64.4
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 1.0e-97 361.3 413 74.6
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 1.0e-94 351.3 415 74.5
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 1.5e-93 347.4 412 71.6
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 1.3e-92 344.4 414 68.6
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 1.6e-92 344.0 413 72.4
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 1.1e-91 341.3 417 67.4
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 1.4e-91 340.9 414 76.8
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 3.4e-90 336.3 413 75.5
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 1.7e-89 334.0 413 75.3
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 3.8e-89 332.8 417 70.5
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 6.5e-89 332.0 414 66.7
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 5.5e-88 328.9 407 67.6
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 5.5e-88 328.9 414 74.9
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 6.1e-87 325.5 414 72.0
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 1.8e-86 323.9 413 66.3
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 1.8e-86 323.9 413 66.3
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 8.7e-86 321.6 413 65.6
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 5.7e-85 318.9 414 66.4
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 7.4e-85 318.5 414 67.6
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 9.7e-85 318.2 414 69.1
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 1.6e-84 317.4 414 68.4
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 3.7e-84 316.2 411 65.0
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 8.2e-84 315.1 414 67.6
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 1.4e-83 314.3 414 63.8
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 1.8e-83 313.9 414 65.5
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 2.4e-83 313.5 414 65.0
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 3.1e-83 313.2 413 71.9
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 3.1e-83 313.2 414 66.9
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 5.3e-83 312.4 414 68.4
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 1.2e-82 311.2 414 65.2
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 3.4e-82 309.7 413 66.8
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 2.9e-81 306.6 413 64.6
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 3.8e-81 306.2 413 63.4
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 5.0e-81 305.8 413 63.4
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 6.5e-81 305.4 413 66.8
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 6.5e-81 305.4 413 66.8
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 8.5e-81 305.1 412 60.2
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 1.2e-79 301.2 412 62.6
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 1.6e-79 300.8 413 64.4
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 2.7e-79 300.1 413 65.1
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 2.7e-79 300.1 414 66.9
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 2.7e-79 300.1 415 67.0
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 3.6e-79 299.7 400 67.5
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 4.6e-79 299.3 423 65.0
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 4.6e-79 299.3 415 67.0
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 7.9e-79 298.5 414 67.1
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 1.4e-78 297.7 414 63.8
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 1.4e-78 297.7 410 66.6
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 2.3e-78 297.0 413 66.3
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 3.0e-78 296.6 414 63.3
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 5.1e-78 295.8 414 67.6
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 8.8e-78 295.0 414 66.9
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 1.1e-77 294.7 414 67.9
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 1.5e-77 294.3 411 67.4
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 2.0e-77 293.9 413 67.1
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 2.6e-77 293.5 410 65.6
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 4.4e-77 292.7 414 67.4
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 5.7e-77 292.4 414 66.9
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 5.7e-77 292.4 413 65.4
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 1.7e-76 290.8 414 65.7
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 2.8e-76 290.0 412 65.5
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 4.8e-76 289.3 412 65.8
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 1.1e-75 288.1 414 66.2
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 1.4e-75 287.7 413 68.8
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 1.4e-75 287.7 414 62.3
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 2.4e-75 287.0 406 65.0
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 3.1e-75 286.6 537 52.5
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 9.1e-75 285.0 413 68.3
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 3.4e-74 283.1 461 56.8
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 4.5e-74 282.7 413 60.3
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 5.0e-73 279.3 414 64.0
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 1.1e-72 278.1 413 63.7
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 4.2e-72 276.2 413 64.2
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 9.4e-72 275.0 410 70.5
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 9.4e-72 275.0 410 66.1
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 1.0e-70 271.6 414 61.8
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 1.0e-70 271.6 409 62.3
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 1.4e-70 271.2 412 71.6
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 1.8e-70 270.8 409 64.5
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 1.3e-68 264.6 415 60.5
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 2.4e-67 260.4 410 58.0
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 5.3e-67 259.2 416 65.4
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 1.3e-65 254.6 409 60.1
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 8.8e-62 241.9 411 60.3
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 2.8e-60 236.9 414 66.7
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 2.9e-57 226.9 406 59.6
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 2.9e-57 226.9 407 65.4
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 2.5e-56 223.8 411 64.7
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 2.7e-55 220.3 419 56.6
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 8.0e-55 218.8 412 60.2
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 2.0e-53 214.2 415 63.9
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 3.8e-49 199.9 415 61.7
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 1.5e-48 198.0 299 79.3
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 8.9e-46 188.7 410 62.9
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 2.3e-41 174.1 412 60.0
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 1.5e-40 171.4 185 63.2
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 9.5e-40 168.7 402 59.2
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 1.0e-38 165.2 107 73.8
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 1.0e-38 165.2 107 73.8
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 2.3e-38 164.1 144 62.5
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 2.0e-37 161.0 183 61.2
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 2.9e-36 157.1 140 59.3
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 9.2e-35 152.1 405 41.5
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 1.6e-34 151.4 107 67.3
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 7.8e-34 149.1 180 48.9
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 7.8e-34 149.1 108 64.8
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 9.5e-32 142.1 107 60.7
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 4.4e-29 133.3 301 58.8
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 4.4e-29 133.3 108 57.4
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 1.2e-13 82.0 56 67.9
C06p28130 Brassica napus HOM05D006667 ORTHO05D008387 8.7e-09 65.9 70 65.7
BcaC04g21805 Brassica carinata HOM05D006667 ORTHO05D008387 5.6e-08 63.2 64 73.4
BolC6t37979H Brassica oleracea HOM05D006667 ORTHO05D008387 1.2e-07 62.0 70 64.3
C09p27300 Brassica napus HOM05D006667 ORTHO05D008387 4.7e-07 60.1 70 68.6
BolC6t38487H Brassica oleracea HOM05D006667 ORTHO05D008387 1.4e-06 58.5 70 68.6
Thhalv10020882m.g Eutrema salsugineum HOM05D005998 ORTHO05D007664 2.4e-06 57.8 171 27.5
PSO573G0021 Papaver somniferum HOM05D005998 ORTHO05D007664 4.0e-06 57.0 167 28.7
Actinidia23131 Actinidia chinensis HOM05D005998 ORTHO05D007664 6.9e-06 56.2 151 28.5
Pp3c10_8230 Physcomitrium patens HOM05D006667 ORTHO05D008387 9.0e-06 55.8 59 49.2


User provided reference genes

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