Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008712 Carpinus fangiana HOM05D005682 ORTHO05D007050 0.0e+00 1699.5 873 100.0
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 0.0e+00 1446.8 819 92.8
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 0.0e+00 1182.5 854 73.3
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 0.0e+00 1104.0 875 69.3
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 3.7e-272 941.8 847 59.3
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 6.2e-259 897.9 848 57.4
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 2.4e-258 896.0 826 57.7
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 2.6e-257 892.5 853 56.9
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 1.5e-249 866.7 837 56.6
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 1.3e-248 863.6 859 55.3
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 4.2e-247 858.6 846 55.3
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 1.2e-246 857.1 835 55.6
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 3.0e-245 852.4 847 54.8
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 1.2e-241 840.5 830 55.8
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 3.2e-239 832.4 834 54.7
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 6.2e-235 818.1 837 55.3
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 1.3e-229 800.4 858 52.1
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 5.1e-229 798.5 843 52.1
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 8.7e-229 797.7 813 54.1
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 1.5e-225 786.9 851 52.3
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 2.6e-225 786.2 844 53.4
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 6.5e-224 781.6 862 51.4
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 2.1e-222 776.5 857 50.5
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 6.1e-222 775.0 849 50.5
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 3.0e-221 772.7 850 50.4
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 1.5e-220 770.4 850 51.3
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 2.2e-219 766.5 849 50.3
arahy.Tifrunner.gnm1.ann1.H4B4B0 Arachis hypogaea HOM05D005682 ORTHO05D007050 3.7e-219 765.8 794 52.1
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.8e-218 763.5 800 53.9
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 3.1e-218 762.7 854 50.2
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 5.9e-217 758.4 857 51.2
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 1.3e-216 757.3 842 50.1
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 6.7e-205 718.4 863 49.1
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 3.7e-203 712.6 832 49.4
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 5.3e-202 708.8 865 48.4
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 1.3e-200 704.1 861 49.7
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 8.5e-200 701.4 863 47.3
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 1.2e-198 697.6 825 46.9
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 3.6e-198 696.0 812 48.8
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 5.2e-197 692.2 871 46.8
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 1.5e-196 690.6 760 52.2
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 1.7e-192 677.2 844 45.6
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 6.5e-192 675.2 830 46.0
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 1.9e-191 673.7 854 47.3
Psat7g173480 Pisum sativum HOM05D005682 ORTHO05D007050 6.1e-190 668.7 860 44.9
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 1.4e-189 667.5 856 46.6
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 2.3e-189 666.8 866 46.4
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 2.3e-189 666.8 793 46.9
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 2.0e-188 663.7 866 46.3
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 4.8e-187 659.1 852 46.1
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 1.9e-183 647.1 835 46.2
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 5.5e-183 645.6 837 45.9
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 7.2e-183 645.2 632 55.1
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 1.6e-182 644.0 865 45.8
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 2.1e-182 643.7 821 45.2
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 4.0e-181 639.4 846 44.6
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 5.2e-181 639.0 841 44.7
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 8.8e-181 638.3 849 44.4
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 8.8e-181 638.3 826 45.4
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 1.5e-180 637.5 846 45.0
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 1.8e-178 630.6 807 46.2
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 2.0e-177 627.1 853 44.3
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 2.1e-174 617.1 840 43.9
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 1.8e-173 614.0 852 43.9
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 2.3e-173 613.6 641 52.7
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 2.3e-173 613.6 887 44.3
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 3.2e-170 603.2 818 45.0
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 1.4e-165 587.8 672 50.9
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 8.3e-163 578.6 784 43.9
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 9.2e-162 575.1 890 42.1
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 6.0e-161 572.4 901 40.2
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 6.2e-158 562.4 794 43.3
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 1.4e-157 561.2 687 48.2
Atru.chr11.1182 Acer truncatum HOM05D005682 ORTHO05D007050 5.2e-157 559.3 606 52.6
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 3.7e-155 553.1 826 40.7
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 2.3e-152 543.9 760 42.8
Dinv11711 Davidia involucrata HOM05D005682 ORTHO05D007050 4.1e-146 523.1 493 58.0
Cc11_g00090 Coffea canephora HOM05D005682 ORTHO05D007050 1.9e-143 514.2 762 42.1
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 1.1e-141 508.4 656 45.3
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 2.3e-136 490.7 695 43.2
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 2.5e-135 487.3 796 39.2
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 5.1e-128 463.0 655 43.5
Solyc02g055460.3 Solanum lycopersicum HOM05D005682 ORTHO05D007050 2.6e-124 450.7 657 42.2
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 4.9e-123 446.4 655 42.1
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 5.5e-122 443.0 948 32.2
BraA05t21816Z Brassica rapa HOM05D005682 ORTHO05D007050 1.0e-112 412.1 591 42.1
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.9e-106 391.3 532 43.8
HPP92_008562 Vanilla planifolia HOM05D005682 ORTHO05D007050 1.3e-104 385.2 764 36.4
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 8.7e-104 382.5 535 42.6
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 1.4e-101 375.2 793 32.9
Nitab4.5_0028170g0010 Nicotiana tabacum HOM05D005682 ORTHO05D007050 4.6e-97 360.1 493 42.8
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 1.9e-90 338.2 513 44.1
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 1.9e-90 338.2 1004 28.5
BcaC05g28407 Brassica carinata HOM05D005682 ORTHO05D007050 4.7e-89 333.6 371 49.3
CSS0031646 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 3.3e-87 327.4 375 51.7
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 4.4e-87 327.0 223 71.3
SHI13893 Sapria himalayana HOM05D005682 ORTHO05D007050 6.1e-81 306.6 501 39.5
CARHR095290 Cardamine hirsuta HOM05D005682 ORTHO05D007050 1.9e-74 285.0 339 46.9
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 6.8e-72 276.6 205 65.4
SHI13894 Sapria himalayana HOM05D005682 ORTHO05D007050 1.7e-67 261.9 308 47.7
CAN.G157.17 Capsicum annuum HOM05D005682 ORTHO05D007050 3.7e-62 244.2 243 55.1
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 5.9e-60 236.9 474 35.0
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 1.0e-59 236.1 895 27.4
CDE04G1313 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 5.0e-59 233.8 286 47.9
COL.COLO4_08119 Corchorus olitorius HOM05D005682 ORTHO05D007050 1.6e-57 228.8 192 57.8
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 6.1e-57 226.9 190 61.6
A05p29790 Brassica napus HOM05D005682 ORTHO05D007050 1.0e-56 226.1 219 58.0
Sopen02g009200 Solanum pennellii HOM05D005682 ORTHO05D007050 5.7e-55 220.3 247 50.6
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 1.7e-54 218.8 230 50.4
Solyc02g055470.2 Solanum lycopersicum HOM05D005682 ORTHO05D007050 8.3e-54 216.5 181 62.4
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 2.4e-53 214.9 534 32.2
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 2.4e-53 214.9 293 41.0
CSS0001307 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 3.2e-53 214.5 212 54.7
Cc11_g04390 Coffea canephora HOM05D005682 ORTHO05D007050 1.3e-51 209.1 264 45.1
Pp3c7_6630 Physcomitrium patens HOM05D005682 ORTHO05D007050 4.9e-46 190.7 994 24.5
Nitab4.5_0002392g0020 Nicotiana tabacum HOM05D005682 ORTHO05D007050 3.3e-42 177.9 200 53.5
Nitab4.5_0000139g0150 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.6e-33 149.1 131 59.5
CSS0026201 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 2.9e-30 138.3 131 57.3
C05p44920 Brassica napus HOM05D005682 ORTHO05D007050 1.9e-29 135.6 177 40.1
Peaxi162Scf00363g00073 Petunia axillaris HOM05D005682 ORTHO05D007050 1.7e-27 129.0 126 58.7
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 6.6e-27 127.1 212 36.3
Psat4g043640 Pisum sativum HOM05D005682 ORTHO05D007050 1.3e-22 112.8 113 48.7
Aqoxy2G03797 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 3.4e-15 88.2 106 42.5
FvH4_4g15932 Fragaria vesca HOM05D005682 ORTHO05D007050 1.9e-13 82.4 176 34.1
CBR_g66815 Chara braunii HOM05D005682 ORTHO05D007050 3.0e-11 75.1 139 30.9
FvH4_6g37553 Fragaria vesca HOM05D005682 ORTHO05D007050 5.1e-11 74.3 66 56.1
HPP92_008566 Vanilla planifolia HOM05D005682 ORTHO05D007050 1.1e-08 66.6 177 31.1
Psat5g212920 Pisum sativum HOM05D005682 ORTHO05D007050 1.7e-06 59.3 259 24.7


User provided reference genes

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