Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 2.8e-191 671.8 338 100.0
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 4.0e-190 667.9 338 99.4
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 2.1e-183 645.6 338 94.7
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 3.2e-179 631.7 338 92.9
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 9.3e-179 630.2 338 92.0
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.0e-177 626.7 339 92.3
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 3.0e-177 625.2 338 90.8
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 6.7e-177 624.0 338 91.1
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 6.7e-177 624.0 338 91.7
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 8.7e-177 623.6 338 91.4
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.1e-176 623.2 338 91.1
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.5e-176 622.9 331 93.7
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.5e-176 622.1 338 91.4
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 3.3e-176 621.7 338 90.5
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.3e-176 621.3 338 90.5
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 1.6e-175 619.4 338 90.5
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.6e-175 619.4 338 90.5
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.6e-175 619.4 339 90.3
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 2.1e-175 619.0 338 90.2
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 2.8e-175 618.6 339 90.0
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 2.8e-175 618.6 338 90.2
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.7e-175 618.2 339 90.3
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 6.3e-175 617.5 339 90.9
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 6.3e-175 617.5 342 89.8
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 1.4e-174 616.3 334 90.4
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.8e-174 615.9 338 89.3
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.8e-174 615.9 339 90.3
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 2.4e-174 615.5 336 89.9
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 3.1e-174 615.1 339 90.6
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.1e-174 614.8 338 89.1
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 4.1e-174 614.8 338 89.6
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 6.9e-174 614.0 339 90.0
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 6.9e-174 614.0 338 89.1
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.5e-173 612.8 338 90.2
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 2.0e-173 612.5 338 89.1
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 2.0e-173 612.5 338 89.1
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 2.0e-173 612.5 339 90.0
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 2.6e-173 612.1 338 89.6
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 3.4e-173 611.7 338 89.6
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 4.5e-173 611.3 339 89.7
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 4.5e-173 611.3 339 89.7
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 7.6e-173 610.5 338 89.6
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 7.6e-173 610.5 339 89.7
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.0e-172 610.1 339 88.8
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.3e-172 609.8 338 89.1
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 2.2e-172 609.0 337 89.6
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 5.0e-172 607.8 338 89.3
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 5.0e-172 607.8 332 90.1
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 5.0e-172 607.8 338 89.3
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.4e-171 606.3 338 88.5
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.4e-171 606.3 338 88.5
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.4e-171 606.3 338 88.5
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.4e-171 606.3 339 88.5
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.4e-171 606.3 339 89.7
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 3.2e-171 605.1 338 88.8
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 3.2e-171 605.1 339 88.2
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 7.2e-171 604.0 333 89.8
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 1.2e-170 603.2 337 88.1
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 1.2e-170 603.2 338 87.9
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 1.6e-170 602.8 337 88.4
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.6e-170 602.8 338 87.9
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 3.6e-170 601.7 332 89.5
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 3.6e-170 601.7 340 87.6
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 4.6e-170 601.3 333 89.2
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 6.1e-170 600.9 337 88.4
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 7.9e-170 600.5 338 87.0
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 1.3e-169 599.7 334 88.3
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 3.0e-169 598.6 314 94.6
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 3.9e-169 598.2 338 86.4
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.5e-168 595.5 341 86.2
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 3.3e-168 595.1 334 88.3
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 5.7e-168 594.3 322 91.9
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 7.4e-168 594.0 332 87.7
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.6e-167 592.8 338 84.6
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 4.8e-167 591.3 337 86.6
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.3e-167 590.9 339 86.1
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.8e-166 589.3 317 91.8
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.8e-166 589.3 339 85.8
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.8e-166 589.3 339 85.8
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 5.3e-166 587.8 353 84.4
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 5.3e-166 587.8 380 79.5
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.0e-165 585.9 340 85.0
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 4.5e-165 584.7 339 85.0
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 1.7e-164 582.8 338 87.3
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 1.1e-163 580.1 319 90.3
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.6e-162 576.2 333 83.8
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 2.1e-162 575.9 309 90.9
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 3.6e-162 575.1 338 82.5
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 3.6e-162 575.1 339 85.0
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 6.1e-162 574.3 333 83.5
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 5.1e-161 571.2 319 87.5
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 5.1e-161 571.2 337 82.5
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 6.7e-161 570.9 334 83.2
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 6.7e-161 570.9 334 83.2
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 8.8e-161 570.5 334 83.2
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.1e-160 570.1 334 82.9
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 1.1e-160 570.1 348 80.5
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 1.5e-160 569.7 338 82.2
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 1.5e-160 569.7 334 82.9
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 1.5e-160 569.7 334 82.9
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 2.0e-160 569.3 334 82.6
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 2.0e-160 569.3 334 82.9
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 2.6e-160 568.9 334 83.2
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 2.6e-160 568.9 335 82.7
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 2.6e-160 568.9 309 89.6
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 3.3e-160 568.5 334 82.6
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 5.7e-160 567.8 334 82.3
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.7e-160 567.0 339 84.4
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.7e-159 566.2 334 82.6
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 3.7e-159 565.1 334 82.3
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 3.7e-159 565.1 334 82.3
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 3.7e-159 565.1 334 82.3
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 1.1e-158 563.5 327 82.9
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.8e-158 562.8 334 81.7
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 1.5e-157 559.7 349 79.4
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.5e-157 559.7 334 82.0
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.9e-157 557.8 320 85.9
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 8.5e-156 553.9 338 83.1
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 7.2e-155 550.8 337 78.0
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 2.3e-153 545.8 335 77.0
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 6.7e-153 544.3 375 76.8
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.0e-152 542.7 334 78.1
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.4e-150 536.6 315 82.5
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 1.8e-150 536.2 418 69.4
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.6e-149 533.1 337 76.3
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 4.5e-149 531.6 337 75.7
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.5e-144 516.5 338 80.2
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 8.2e-143 510.8 360 72.8
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 2.9e-140 502.3 271 90.4
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 5.0e-140 501.5 263 94.7
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 6.5e-140 501.1 295 84.4
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.1e-138 496.1 263 93.9
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.1e-138 496.1 263 93.9
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 8.8e-137 490.7 320 74.1
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 8.5e-132 474.2 338 73.4
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.1e-131 473.8 338 73.4
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 6.1e-122 441.4 343 66.5
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 2.0e-120 436.4 238 88.7
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 1.7e-119 433.3 251 82.9
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 6.2e-114 414.8 251 81.7
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 6.2e-114 414.8 311 63.3
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 2.7e-109 399.4 244 78.7
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.0e-108 397.5 216 89.4
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 7.1e-102 374.8 317 56.8
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 2.7e-101 372.9 330 57.3
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 1.4e-54 217.6 130 81.5
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.1e-44 182.6 163 60.7
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 6.3e-34 149.1 180 52.8
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 1.7e-31 141.0 79 84.8
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 7.5e-27 125.6 79 75.9
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 7.0e-25 119.0 72 79.2
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 1.2e-24 118.2 74 77.0
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 7.2e-22 109.0 109 58.7
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 2.3e-15 87.4 51 82.4
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 2.0e-11 74.3 41 80.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 4.4e-11 73.2 98 46.9
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 7.5e-11 72.4 61 63.9
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 3.7e-10 70.1 60 63.3
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 3.7e-10 70.1 60 63.3
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 1.1e-09 68.6 100 43.0


User provided reference genes

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