Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 2.4e-187 658.7 326 100.0
Haze_11711 Corylus avellana HOM05D010496 ORTHO05D010879 4.8e-148 528.1 287 92.7
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 1.9e-91 340.1 294 63.3
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 3.9e-89 332.4 300 63.0
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 7.1e-51 205.3 300 44.0
MD04G1026500 Malus domestica HOM05D010496 ORTHO05D010879 1.4e-43 181.0 302 40.7
GSVIVG01031653001 Vitis vinifera HOM05D010496 ORTHO05D010879 7.2e-43 178.7 320 37.5
RcHm_v2.0_Chr4g0410661 Rosa chinensis HOM05D010496 ORTHO05D010879 8.2e-39 165.2 317 37.9
FAN12G2147 Fragaria x ananassa HOM05D010496 ORTHO05D010879 3.6e-34 149.8 325 34.8
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 1.8e-33 147.5 304 37.8
FAN22G0913 Fragaria x ananassa HOM05D010496 ORTHO05D010879 6.7e-33 145.6 325 34.5
FvH4_4g12430 Fragaria vesca HOM05D010496 ORTHO05D010879 8.8e-33 145.2 324 34.0
Duzib151G0883 Durio zibethinus HOM05D010496 ORTHO05D010879 3.3e-32 143.3 256 41.8
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 5.7e-32 142.5 311 35.7
Glyma.10G293200 Glycine max HOM05D011141 ORTHO05D010879 4.8e-31 139.4 295 34.9
FAN07G2091 Fragaria x ananassa HOM05D010496 ORTHO05D010879 1.8e-30 137.5 298 34.2
Glyma.20G243300 Glycine max HOM05D011141 ORTHO05D010879 5.3e-30 136.0 286 37.4
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 1.8e-25 120.9 311 31.8
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 1.8e-25 120.9 280 32.5
arahy.Tifrunner.gnm1.ann1.R8V4SK Arachis hypogaea HOM05D011141 ORTHO05D010879 3.9e-25 119.8 298 32.6
arahy.Tifrunner.gnm1.ann1.P32IB9 Arachis hypogaea HOM05D011141 ORTHO05D010879 1.5e-24 117.9 298 31.5
Glyma.20G243200 Glycine max HOM05D011141 ORTHO05D010879 4.4e-24 116.3 246 36.6
Glyma.10G293000 Glycine max HOM05D011141 ORTHO05D010879 1.3e-23 114.8 286 34.6
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 1.3e-23 114.8 267 36.7
VMungo0720G3183 Vigna mungo HOM05D011141 ORTHO05D010879 1.1e-22 111.7 287 32.8
Gorai.006G226800 Gossypium raimondii HOM05D010496 ORTHO05D010879 4.1e-22 109.8 181 43.6
Thecc.04G186900 Theobroma cacao HOM05D010496 ORTHO05D010879 4.1e-22 109.8 194 37.6
Gohir.A09G209500 Gossypium hirsutum HOM05D010496 ORTHO05D010879 5.3e-22 109.4 178 42.7
Gohir.D09G202900 Gossypium hirsutum HOM05D010496 ORTHO05D010879 9.1e-22 108.6 181 43.1
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 1.5e-19 101.3 206 37.9
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 5.5e-19 99.4 218 37.6
Sed0016606 Sechium edule HOM05D010496 ORTHO05D010879 4.7e-18 96.3 244 33.2
AUR62026200 Chenopodium quinoa HOM05D007934 ORTHO05D010067 8.0e-18 95.5 221 36.2
VMungo0720G2993 Vigna mungo HOM05D011141 ORTHO05D010879 2.0e-16 90.9 230 30.9
AUR62018491 Chenopodium quinoa HOM05D007934 ORTHO05D010879 2.2e-15 87.4 221 34.4
VMungo0720G1878 Vigna mungo HOM05D011141 ORTHO05D010879 6.3e-15 85.9 255 29.4
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 3.1e-14 83.6 259 28.6
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 2.9e-12 77.0 188 33.0
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 1.1e-11 75.1 223 30.9
Phvul.007G006800 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 2.5e-11 73.9 176 33.5
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 3.2e-11 73.6 60 46.7
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.2e-11 73.6 169 34.3
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 7.2e-11 72.4 158 28.5
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 2.7e-10 70.5 101 38.6
EL10Ac3g07401 Beta vulgaris HOM05D010496 ORTHO05D010879 3.6e-10 70.1 41 70.7
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 6.1e-10 69.3 136 33.8
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 8.0e-10 68.9 128 31.2
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.0e-09 68.6 89 38.2
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.4e-09 68.2 47 57.4
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 1.8e-09 67.8 70 41.4
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 2.3e-09 67.4 147 35.4
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 2.3e-09 67.4 165 32.7
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 3.0e-09 67.0 142 35.2
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 4.0e-09 66.6 64 43.8
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 4.0e-09 66.6 67 40.3
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 4.0e-09 66.6 105 35.2
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 5.2e-09 66.2 223 29.1
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 6.8e-09 65.9 144 33.3
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 6.8e-09 65.9 185 32.4
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 8.8e-09 65.5 56 48.2
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 8.8e-09 65.5 87 36.8
Lalb_Chr06g0164061 Lupinus albus HOM05D011141 ORTHO05D010879 8.8e-09 65.5 181 32.6
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 8.8e-09 65.5 155 32.3
Phvul.007G006900 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 1.5e-08 64.7 208 31.2
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 1.5e-08 64.7 137 30.7
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 2.0e-08 64.3 167 26.9
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.0e-08 64.3 147 31.3
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.6e-08 63.9 131 32.1
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 2.6e-08 63.9 64 40.6
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 3.4e-08 63.5 75 38.7
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.4e-08 63.5 127 32.3
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 5.7e-08 62.8 141 34.0
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.7e-08 62.8 50 48.0
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 5.7e-08 62.8 132 30.3
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 5.7e-08 62.8 140 32.1
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 7.5e-08 62.4 202 29.7
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 7.5e-08 62.4 49 51.0
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 7.5e-08 62.4 158 31.6
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 9.8e-08 62.0 246 28.9
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 9.8e-08 62.0 107 33.6
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 1.3e-07 61.6 297 28.6
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.3e-07 61.6 51 47.1
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.3e-07 61.6 140 32.1
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 1.3e-07 61.6 204 27.9
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 1.7e-07 61.2 152 30.3
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.7e-07 61.2 78 37.2
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 1.7e-07 61.2 179 27.9
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.2e-07 60.8 74 39.2
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 2.2e-07 60.8 213 29.6
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-07 60.8 213 29.6
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 2.2e-07 60.8 213 29.6
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 2.2e-07 60.8 167 25.7
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 2.2e-07 60.8 187 27.3
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.8e-07 60.5 145 28.3
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.8e-07 60.5 145 28.3
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.8e-07 60.5 145 28.3
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 2.8e-07 60.5 282 26.6
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 2.8e-07 60.5 72 40.3
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 2.8e-07 60.5 147 29.3
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 2.8e-07 60.5 201 27.4
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 3.7e-07 60.1 139 29.5
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 3.7e-07 60.1 199 26.6
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.7e-07 60.1 274 26.3
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 3.7e-07 60.1 112 33.9
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 4.8e-07 59.7 238 29.4
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 4.8e-07 59.7 109 32.1
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 4.8e-07 59.7 45 53.3
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 4.8e-07 59.7 116 33.6
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 4.8e-07 59.7 250 25.6
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 6.3e-07 59.3 241 27.0
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 6.3e-07 59.3 145 28.3
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 6.3e-07 59.3 137 29.2
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 6.3e-07 59.3 134 31.3
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 6.3e-07 59.3 198 28.3
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 8.3e-07 58.9 174 28.2
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 8.3e-07 58.9 174 28.2
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 8.3e-07 58.9 188 28.2
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 8.3e-07 58.9 150 28.7
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 8.3e-07 58.9 228 29.8
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 8.3e-07 58.9 45 53.3
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 1.1e-06 58.5 79 35.4
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 1.4e-06 58.2 72 40.3
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 1.4e-06 58.2 262 27.5
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 1.8e-06 57.8 75 36.0
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 2.4e-06 57.4 100 33.0
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 2.4e-06 57.4 160 28.8
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 3.1e-06 57.0 226 26.1
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.1e-06 57.0 190 25.8
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 3.1e-06 57.0 138 32.6
PSO675G9246 Papaver somniferum HOM05D061670 ORTHO05D010879 3.1e-06 57.0 140 32.9
Phvul.005G092100 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 3.1e-06 57.0 107 32.7
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 4.1e-06 56.6 167 29.9
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 4.1e-06 56.6 187 27.8
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 4.1e-06 56.6 210 28.1
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 4.1e-06 56.6 83 36.1
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 5.4e-06 56.2 69 37.7
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 5.4e-06 56.2 183 25.1
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 5.4e-06 56.2 136 31.6
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 7.0e-06 55.8 72 38.9
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 7.0e-06 55.8 189 28.0
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 9.1e-06 55.5 74 39.2
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 9.1e-06 55.5 146 29.5


User provided reference genes

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