Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008656 Carpinus fangiana HOM05D007138 ORTHO05D009148 0.0e+00 1869.0 934 100.0
Haze_11677 Corylus avellana HOM05D007138 ORTHO05D009148 0.0e+00 1662.1 986 87.4
CiPaw.01G114100 Carya illinoinensis HOM05D007138 ORTHO05D009148 1.1e-210 737.6 1014 49.1
QL06p027005 Quercus lobata HOM05D007138 ORTHO05D009148 9.4e-205 718.0 713 58.9
Potri.002G236300 Populus trichocarpa HOM05D007138 ORTHO05D009148 8.5e-105 386.0 808 37.3
MD04G1019900 Malus domestica HOM05D007138 ORTHO05D009148 4.2e-104 383.6 745 38.8
Thecc.04G192200 Theobroma cacao HOM05D007138 ORTHO05D009148 3.3e-101 374.0 774 37.0
Prupe.1G169400 Prunus persica HOM05D007138 ORTHO05D009148 3.1e-99 367.5 695 39.0
Duzib151G0530 Durio zibethinus HOM05D007138 ORTHO05D009148 6.1e-95 353.2 803 35.7
FAN12G4162 Fragaria x ananassa HOM05D007138 ORTHO05D009148 4.1e-91 340.5 706 37.5
RcHm_v2.0_Chr4g0412661 Rosa chinensis HOM05D007138 ORTHO05D009148 1.2e-90 339.0 698 38.0
FvH4_4g12980 Fragaria vesca HOM05D007138 ORTHO05D009148 1.5e-90 338.6 706 37.4
Sabra02G0180000 Salix brachista HOM05D007138 ORTHO05D009148 5.9e-90 336.7 751 36.2
Glyma.05G150500 Glycine max HOM05D007138 ORTHO05D009148 8.0e-87 326.2 765 35.8
Gohir.D09G201200 Gossypium hirsutum HOM05D007138 ORTHO05D009148 1.4e-86 325.5 746 35.3
Gorai.006G224900 Gossypium raimondii HOM05D007138 ORTHO05D009148 2.3e-86 324.7 746 35.9
Dinv27178 Davidia involucrata HOM05D007138 ORTHO05D009148 3.3e-85 320.9 486 42.8
Gohir.A09G207700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 7.4e-85 319.7 750 33.7
Lalb_Chr13g0294671 Lupinus albus HOM05D007138 ORTHO05D009148 1.1e-83 315.8 777 34.1
Glyma.08G107400 Glycine max HOM05D007138 ORTHO05D009148 7.0e-83 313.2 760 35.3
Manes.01G054400 Manihot esculenta HOM05D007138 ORTHO05D009148 3.5e-82 310.8 784 32.5
FAN07G0102 Fragaria x ananassa HOM05D007138 ORTHO05D009148 8.5e-81 306.2 674 35.9
CANSAT78G1621 Cannabis sativa HOM05D007138 ORTHO05D009148 2.1e-79 301.6 690 35.9
TWI53G1035 Tripterygium wilfordii HOM05D007138 ORTHO05D009148 1.5e-77 295.4 794 33.8
Lj4g0024791 Lotus japonicus HOM05D007138 ORTHO05D009148 9.7e-77 292.7 783 33.2
TAR365G0398 Trochodendron aralioides HOM05D007138 ORTHO05D009148 8.3e-76 289.7 517 39.8
arahy.Tifrunner.gnm1.ann1.KQUG48 Arachis hypogaea HOM05D007138 ORTHO05D009148 5.3e-75 287.0 798 32.5
Gorai.005G025100 Gossypium raimondii HOM05D007138 ORTHO05D009148 3.8e-73 280.8 698 34.4
Gohir.A02G017700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 5.0e-73 280.4 690 35.4
Eucgr.H02635 Eucalyptus grandis HOM05D007138 ORTHO05D009148 6.5e-73 280.0 768 32.4
arahy.Tifrunner.gnm1.ann1.JT7ZMS Arachis hypogaea HOM05D007138 ORTHO05D009148 4.2e-72 277.3 807 31.1
Gohir.D02G019900 Gossypium hirsutum HOM05D007138 ORTHO05D009148 6.1e-71 273.5 687 34.6
GSVIVG01031579001 Vitis vinifera HOM05D007138 ORTHO05D009148 6.1e-71 273.5 461 39.5
Medtr8g083310 Medicago truncatula HOM05D007138 ORTHO05D009148 1.3e-68 265.8 694 34.9
Atru.chr3.1784 Acer truncatum HOM05D007138 ORTHO05D009148 1.3e-65 255.8 364 44.0
Psat0s4823g0040 Pisum sativum HOM05D007138 ORTHO05D009148 1.5e-64 252.3 740 31.2
Ciclev10004866m.g Citrus clementina HOM05D007138 ORTHO05D009148 4.2e-64 250.8 407 41.0
Nn1g08135 Nelumbo nucifera HOM05D007138 ORTHO05D009148 4.2e-64 250.8 489 37.0
ClCG06G003170 Citrullus lanatus HOM05D007138 ORTHO05D009148 8.0e-63 246.5 743 31.1
Cpa.g.sc157.22 Carica papaya HOM05D007138 ORTHO05D009148 2.3e-62 245.0 1004 27.4
Ca_18004_v3 Cicer arietinum L. HOM05D007138 ORTHO05D009148 5.2e-62 243.8 705 31.5
Phvul.003G291400 Phaseolus vulgaris HOM05D007138 ORTHO05D009148 8.9e-62 243.0 734 31.3
Lalb_Chr12g0205841 Lupinus albus HOM05D007138 ORTHO05D009148 5.7e-61 240.4 382 41.4
Sed0014888 Sechium edule HOM05D007138 ORTHO05D009148 4.9e-60 237.3 711 32.2
TPR.G11960 Trifolium pratense HOM05D000150 ORTHO05D000108 6.3e-60 236.9 634 34.9
Hma1.2p1_1457F.1_g284650 Hydrangea macrophylla HOM05D007138 ORTHO05D009148 5.4e-59 233.8 360 41.4
MSTRG.9782 Avicennia marina HOM05D007138 ORTHO05D009148 1.2e-58 232.6 550 32.7
Hund25334 Selenicereus undatus HOM05D007138 ORTHO05D009148 4.5e-58 230.7 521 34.7
EL10Ac3g07428 Beta vulgaris HOM05D007138 ORTHO05D009148 3.9e-57 227.6 420 36.9
AUR62018524 Chenopodium quinoa HOM05D007138 ORTHO05D009148 1.8e-54 218.8 441 35.6
PGR083G1257 Punica granatum HOM05D007138 ORTHO05D009148 3.1e-54 218.0 626 32.3
AUR62020894 Chenopodium quinoa HOM05D007138 ORTHO05D009148 1.5e-53 215.7 428 35.3
Sc13g0000510 Simmondsia chinensis HOM05D007138 ORTHO05D009148 1.5e-53 215.7 630 31.6
Cc03_g09210 Coffea canephora HOM05D007138 ORTHO05D009148 1.3e-52 212.6 650 31.5
CsaV3_6G009270 Cucumis sativus L. HOM05D007138 ORTHO05D009148 8.3e-52 209.9 826 30.4
Aqoxy2G03906 Aquilegia oxysepala HOM05D007138 ORTHO05D009148 1.1e-51 209.5 743 29.9
Lsat_1_v5_gn_6_59601 Lactuca sativa HOM05D007138 ORTHO05D009148 1.6e-50 205.7 437 34.6
Migut.G00946 Erythranthe guttata HOM05D007138 ORTHO05D009148 2.3e-49 201.8 418 36.4
ECA233G0560 Erigeron canadensis HOM05D007138 ORTHO05D009148 4.3e-48 197.6 569 30.1
SalBow2G2858 Salvia bowleyana HOM05D007138 ORTHO05D009148 1.6e-47 195.7 699 30.2
Oeu034315.1 Olea europaea HOM05D007138 ORTHO05D009148 3.1e-46 191.4 755 27.5
SalBow2G0985 Salvia bowleyana HOM05D007138 ORTHO05D009148 4.0e-46 191.0 388 36.9
CARHR099730 Cardamine hirsuta HOM05D007138 ORTHO05D009148 1.4e-43 182.6 451 32.2
VMungo0251G1281 Vigna mungo HOM05D007138 ORTHO05D009148 1.9e-43 182.2 196 54.6
Carub.0003s2404 Capsella rubella HOM05D007138 ORTHO05D009148 7.1e-43 180.3 357 35.0
HanXRQChr02g0058451 Helianthus annuus HOM05D007138 ORTHO05D009148 1.0e-41 176.4 496 31.5
Sp3g21450 Schrenkiella parvula HOM05D007138 ORTHO05D009148 3.9e-41 174.5 384 32.8
THA.LOC104804782 Tarenaya hassleriana HOM05D007138 ORTHO05D009148 8.6e-41 173.3 345 37.1
Ah.04g149560 Amaranthus hybridus HOM05D001269 ORTHO05D001083 2.5e-40 171.8 439 32.1
BcaC06g35563 Brassica carinata HOM05D007138 ORTHO05D009148 2.5e-40 171.8 348 34.5
AL3G38640 Arabidopsis lyrata HOM05D007138 ORTHO05D009148 7.3e-40 170.2 529 30.2
A07p08650 Brassica napus HOM05D007138 ORTHO05D009148 1.6e-39 169.1 342 36.0
BraA07t28655Z Brassica rapa HOM05D007138 ORTHO05D009148 1.6e-39 169.1 342 36.0
Peaxi162Scf00286g01047 Petunia axillaris HOM05D007138 ORTHO05D009148 3.6e-39 167.9 974 26.5
PGSC0003DMG400021869 Solanum tuberosum HOM05D007138 ORTHO05D009148 3.6e-39 167.9 649 29.3
AT3G23740 Arabidopsis thaliana HOM05D007138 ORTHO05D009148 4.7e-39 167.5 377 34.0
BcaB06g26533 Brassica carinata HOM05D007138 ORTHO05D009148 4.7e-39 167.5 354 35.0
Nitab4.5_0000037g0170 Nicotiana tabacum HOM05D007138 ORTHO05D009148 1.8e-38 165.6 131 62.6
C07p13480 Brassica napus HOM05D007138 ORTHO05D009148 2.3e-38 165.2 348 34.2
BolC7t41843H Brassica oleracea HOM05D007138 ORTHO05D009148 2.3e-38 165.2 348 34.2
Thhalv10002448m.g Eutrema salsugineum HOM05D007138 ORTHO05D009148 3.1e-38 164.9 546 28.6
Solyc09g092510.3 Solanum lycopersicum HOM05D007138 ORTHO05D009148 3.1e-38 164.9 688 29.5
Sopen09g035410 Solanum pennellii HOM05D007138 ORTHO05D009148 1.7e-36 159.1 135 59.3
MBI11_g07400_MAGBIO Magnolia biondii HOM05D007138 ORTHO05D009148 4.9e-36 157.5 132 57.6
MELO3C021153.2 Cucumis melo HOM05D007138 ORTHO05D009148 8.3e-36 156.8 437 32.0
unitig_747.g21666 Utricularia gibba HOM05D007138 ORTHO05D009148 1.9e-32 145.6 328 32.6
Lsat_1_v5_gn_6_58941 Lactuca sativa HOM05D007138 ORTHO05D009148 8.9e-30 136.7 962 24.2
Aa31LG8G10280 Aethionema arabicum HOM05D007138 ORTHO05D009148 3.4e-29 134.8 127 53.5
Oeu056444.1 Olea europaea HOM05D007138 ORTHO05D009148 4.4e-29 134.4 478 28.2
Zm00001eb334100 Zea mays HOM05D007138 ORTHO05D009148 4.2e-27 127.9 237 34.6
Os01g0101800 Oryza sativa ssp. japonica HOM05D007138 ORTHO05D009148 5.6e-24 117.5 127 46.5
Nn1g02395 Nelumbo nucifera HOM05D007138 ORTHO05D009148 3.8e-20 104.8 285 32.3
Zm00001eb127090 Zea mays HOM05D007138 ORTHO05D009148 1.6e-18 99.4 668 23.2
Lalb_Chr12g0205851 Lupinus albus HOM05D007138 ORTHO05D009148 6.0e-18 97.4 375 28.5
CDE09G0581 Ceratophyllum demersum HOM05D007138 ORTHO05D009148 1.3e-17 96.3 72 61.1
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 1.7e-17 95.9 241 30.7
ATR0561G013 Amborella trichopoda HOM05D007138 ORTHO05D009148 3.1e-14 85.1 203 31.5
Atru.chr3.1785 Acer truncatum HOM05D007138 ORTHO05D009148 9.3e-11 73.6 264 29.9
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 3.9e-09 68.2 263 27.0
Ciclev10006158m.g Citrus clementina HOM05D007138 ORTHO05D009148 6.7e-09 67.4 95 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 3.3e-08 65.1 114 35.1
Psat6g077920 Pisum sativum HOM05D003208 ORTHO05D009148 5.6e-08 64.3 217 26.3
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 7.4e-08 63.9 69 43.5
TPR.G636 Trifolium pratense HOM05D007138 ORTHO05D009148 8.1e-07 60.5 98 39.8
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 1.4e-06 59.7 109 33.9
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 2.4e-06 58.9 236 28.8


User provided reference genes

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