Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 4.3e-77 291.2 140 100.0
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 6.8e-59 230.7 123 87.0
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 1.2e-58 229.9 120 89.2
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 2.0e-58 229.2 123 86.2
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 3.4e-58 228.4 124 86.3
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 5.8e-58 227.6 121 90.1
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 5.8e-58 227.6 122 86.9
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 7.5e-58 227.3 124 87.1
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 9.8e-58 226.9 124 86.3
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 9.8e-58 226.9 124 86.3
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 9.8e-58 226.9 124 86.3
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 9.8e-58 226.9 124 86.3
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 1.7e-57 226.1 126 86.5
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 1.7e-57 226.1 120 87.5
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 3.7e-57 224.9 123 85.4
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 3.7e-57 224.9 123 85.4
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 6.4e-57 224.2 124 85.5
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 6.4e-57 224.2 124 84.7
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 8.3e-57 223.8 127 82.7
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 1.4e-56 223.0 123 86.2
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 1.4e-56 223.0 123 83.7
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.4e-56 223.0 124 83.1
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 3.2e-56 221.9 123 85.4
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 3.2e-56 221.9 124 83.1
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 4.1e-56 221.5 124 83.9
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 7.1e-56 220.7 126 83.3
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 9.2e-56 220.3 124 85.5
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 1.2e-55 219.9 124 82.3
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 1.6e-55 219.5 123 81.3
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 2.1e-55 219.2 124 82.3
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 2.1e-55 219.2 124 81.5
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 2.7e-55 218.8 123 81.3
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 3.5e-55 218.4 123 84.6
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 3.5e-55 218.4 123 82.9
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 4.6e-55 218.0 123 82.1
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 1.0e-54 216.9 129 78.3
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 1.0e-54 216.9 123 82.1
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 1.7e-54 216.1 120 80.8
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.7e-54 216.1 124 82.3
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 2.3e-54 215.7 124 79.8
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 2.3e-54 215.7 124 79.8
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 3.0e-54 215.3 123 80.5
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 3.0e-54 215.3 123 81.3
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 3.9e-54 214.9 123 80.5
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 6.6e-54 214.2 123 81.3
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 8.6e-54 213.8 123 78.0
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 8.6e-54 213.8 118 83.9
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 8.6e-54 213.8 124 79.0
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 8.6e-54 213.8 123 80.5
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 1.1e-53 213.4 124 79.8
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 1.1e-53 213.4 124 79.8
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 1.5e-53 213.0 123 81.3
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.5e-53 213.0 130 78.5
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 3.3e-53 211.8 131 79.4
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 3.3e-53 211.8 123 79.7
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 3.3e-53 211.8 116 83.6
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 5.6e-53 211.1 123 79.7
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 7.3e-53 210.7 123 79.7
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 9.5e-53 210.3 127 78.0
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 9.5e-53 210.3 124 78.2
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 1.6e-52 209.5 123 79.7
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 2.1e-52 209.1 123 76.4
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 4.7e-52 208.0 124 77.4
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 6.2e-52 207.6 122 79.5
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 1.4e-51 206.5 126 76.2
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 2.3e-51 205.7 126 74.6
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 6.8e-51 204.1 116 81.0
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 6.8e-51 204.1 124 75.8
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 8.9e-51 203.8 123 77.2
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 1.2e-50 203.4 115 80.9
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 2.6e-50 202.2 124 74.2
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 3.4e-50 201.8 122 77.9
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 5.8e-50 201.1 115 79.1
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 7.6e-50 200.7 115 79.1
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 9.9e-50 200.3 115 80.0
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 1.3e-49 199.9 115 79.1
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 1.3e-49 199.9 122 74.6
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 1.7e-49 199.5 124 75.8
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.7e-49 199.5 122 78.7
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.7e-49 199.5 122 78.7
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 2.2e-49 199.1 115 78.3
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 8.4e-49 197.2 115 80.0
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 1.1e-48 196.8 123 73.2
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 1.9e-48 196.1 124 74.2
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 2.4e-48 195.7 117 76.9
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 3.2e-48 195.3 115 79.1
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 3.2e-48 195.3 124 74.2
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 4.1e-48 194.9 126 71.4
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 4.1e-48 194.9 105 84.8
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 7.1e-48 194.1 128 72.7
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 1.2e-47 193.4 107 81.3
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 1.2e-47 193.4 124 73.4
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 1.6e-47 193.0 124 73.4
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 2.7e-47 192.2 119 75.6
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 3.5e-47 191.8 123 74.0
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 7.8e-47 190.7 133 69.9
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 1.3e-46 189.9 105 81.0
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 2.3e-46 189.1 109 81.7
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 3.0e-46 188.7 106 80.2
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 6.6e-46 187.6 110 77.3
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.1e-45 186.8 107 82.2
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.9e-45 186.0 106 82.1
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.9e-45 186.0 106 82.1
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 3.3e-45 185.3 106 81.1
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 5.6e-45 184.5 107 78.5
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 1.6e-44 183.0 105 79.0
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 4.7e-44 181.4 127 66.9
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 1.8e-43 179.5 107 76.6
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 2.4e-43 179.1 107 77.6
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 4.0e-43 178.3 106 80.2
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 5.2e-43 177.9 131 67.2
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 2.6e-42 175.6 103 76.7
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 2.6e-42 175.6 116 70.7
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 1.3e-41 173.3 98 78.6
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 1.4e-40 169.9 98 77.6
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.2e-39 166.8 86 87.2
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 1.2e-39 166.8 123 68.3
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 4.6e-39 164.9 98 76.5
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.5e-37 159.8 110 67.3
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 2.5e-37 159.1 98 74.5
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 2.5e-37 159.1 98 74.5
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 2.5e-37 159.1 98 74.5
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.7e-33 146.4 107 67.3
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 8.7e-30 134.0 111 55.0
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.1e-29 133.7 95 67.4
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 1.5e-29 133.3 66 87.9
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 8.1e-28 127.5 109 55.0
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 5.8e-26 121.3 123 52.0
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 1.6e-23 113.2 65 78.5
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 7.4e-21 104.4 76 65.8
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 1.3e-20 103.6 69 72.5
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 8.1e-20 100.9 57 82.5
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 3.5e-15 85.5 65 60.0
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 6.7e-14 81.3 50 64.0
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 1.4e-11 73.6 44 65.9
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 4.5e-10 68.6 50 66.0


User provided reference genes

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