Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 2.8e-180 635.2 329 100.0
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 1.9e-168 595.9 328 93.0
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 4.0e-158 561.6 296 96.6
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 5.4e-155 551.2 328 84.8
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 1.6e-154 549.7 319 88.4
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 5.9e-154 547.7 328 85.1
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.3e-153 545.8 323 86.1
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.9e-152 542.7 328 83.8
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 4.2e-152 541.6 328 85.7
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 5.5e-152 541.2 328 85.1
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 5.5e-152 541.2 328 83.8
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 7.2e-152 540.8 328 85.4
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.8e-151 538.9 330 83.9
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 4.7e-151 538.1 315 87.0
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 1.0e-150 537.0 329 83.3
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 1.8e-150 536.2 330 82.7
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 2.3e-150 535.8 328 84.1
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 3.0e-150 535.4 327 84.1
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.2e-149 533.5 328 82.9
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.5e-149 533.1 328 82.6
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 2.6e-149 532.3 324 84.0
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 7.5e-149 530.8 328 82.9
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 9.8e-149 530.4 328 82.3
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 9.8e-149 530.4 328 82.6
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.3e-148 530.0 328 82.0
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 1.3e-148 530.0 330 82.1
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 1.3e-148 530.0 328 82.6
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.3e-148 530.0 330 82.4
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 2.8e-148 528.9 328 82.6
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 3.7e-148 528.5 330 81.8
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.4e-147 526.6 330 83.0
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 2.4e-147 525.8 328 82.6
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 7.0e-147 524.2 328 82.6
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 7.0e-147 524.2 323 81.7
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 7.0e-147 524.2 329 81.5
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 9.2e-147 523.9 328 82.9
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.2e-146 523.5 328 82.0
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.6e-146 523.1 335 80.3
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 1.0e-145 520.4 328 81.1
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 1.3e-145 520.0 316 83.9
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 1.7e-145 519.6 316 83.2
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 1.7e-145 519.6 328 81.4
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 2.9e-145 518.8 328 81.1
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 3.8e-145 518.5 328 80.8
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 5.0e-145 518.1 323 81.1
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 5.0e-145 518.1 328 80.8
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 6.6e-145 517.7 335 79.4
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 1.1e-144 516.9 348 78.4
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.5e-144 515.8 326 81.9
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.5e-144 515.8 362 74.9
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 2.5e-144 515.8 328 79.6
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 3.3e-144 515.4 316 83.9
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 3.3e-144 515.4 329 80.9
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 4.3e-144 515.0 316 83.2
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 4.3e-144 515.0 316 83.2
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 4.3e-144 515.0 330 82.1
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 1.2e-143 513.5 331 80.1
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 1.2e-143 513.5 384 72.1
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 1.6e-143 513.1 316 83.2
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 2.8e-143 512.3 317 81.1
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 3.6e-143 511.9 317 82.6
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.0e-142 510.4 330 80.3
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.0e-142 510.4 353 75.4
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.0e-142 510.4 311 83.0
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 1.4e-142 510.0 316 82.6
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 1.4e-142 510.0 316 82.6
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.8e-142 509.6 311 83.3
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 3.0e-142 508.8 316 82.6
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 5.2e-142 508.1 315 83.5
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 6.8e-142 507.7 315 83.2
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.5e-141 506.5 316 82.3
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 1.5e-141 506.5 323 78.9
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 2.0e-141 506.1 328 77.7
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 4.4e-141 505.0 313 81.5
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 4.4e-141 505.0 316 82.0
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 2.4e-139 499.2 311 81.7
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 1.0e-137 493.8 289 87.2
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 3.0e-137 492.3 315 77.5
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 5.6e-136 488.0 296 83.8
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.2e-135 486.9 362 72.7
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 2.3e-134 482.6 316 75.3
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 6.8e-134 481.1 307 81.1
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 6.8e-134 481.1 319 79.6
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 1.2e-133 480.3 329 73.3
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 5.4e-131 471.5 287 84.7
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 9.5e-128 460.7 297 80.8
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 1.8e-126 456.4 324 74.7
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 3.1e-126 455.7 316 76.6
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 3.4e-125 452.2 319 76.8
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 4.4e-125 451.8 284 82.4
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.9e-124 448.4 382 65.2
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 3.2e-123 445.7 314 71.3
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 7.1e-123 444.5 266 85.0
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 5.2e-118 428.3 323 70.9
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 3.4e-117 425.6 328 70.4
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 2.4e-115 419.5 314 68.5
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 4.1e-115 418.7 275 78.9
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.1e-110 404.1 328 65.9
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.4e-110 403.7 242 85.1
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 9.0e-110 401.0 301 67.1
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 2.6e-109 399.4 339 64.6
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 5.1e-105 385.2 314 65.0
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 1.8e-102 376.7 255 74.1
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 6.7e-97 358.2 221 81.4
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.4e-94 349.7 215 80.9
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 4.0e-86 322.4 316 55.4
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 6.0e-82 308.5 230 67.8
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.3e-81 306.6 186 84.4
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 9.7e-80 301.2 192 80.2
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.3e-79 300.8 308 55.5
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 2.2e-79 300.1 307 53.4
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 4.2e-75 285.8 220 67.3
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 4.5e-69 265.8 166 82.5
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.5e-67 260.0 200 66.5
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.6e-61 240.0 328 47.3
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.7e-58 229.9 284 48.9
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.9e-57 226.1 151 74.8
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 2.6e-53 213.4 160 69.4
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.0e-49 201.4 133 72.9
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 6.7e-49 198.7 242 53.3
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 4.1e-38 162.9 120 65.0
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 9.1e-38 161.8 276 35.9
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.7e-36 157.5 96 79.2
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 1.7e-36 157.5 259 40.9
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 3.8e-36 156.4 104 72.1
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.1e-35 154.8 264 40.5
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 2.8e-34 150.2 140 62.1
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.0e-29 134.0 98 70.4
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 1.0e-28 131.7 101 71.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 1.5e-27 127.9 97 70.1
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 6.0e-21 105.9 113 55.8
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.5e-19 100.5 60 85.0
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 4.3e-19 99.8 54 87.0
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 5.6e-19 99.4 109 51.4
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 5.6e-19 99.4 67 71.6
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.1e-18 97.4 88 63.6
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.1e-17 95.1 59 84.7
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.2e-16 91.7 62 69.4
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 6.4e-15 85.9 55 72.7
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 9.5e-11 72.0 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.2e-06 57.0 48 56.2


User provided reference genes

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