Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008594 Carpinus fangiana HOM05D000343 ORTHO05D021090 1.3e-52 209.5 111 100.0
Cfa000665 Carpinus fangiana HOM05D000343 ORTHO05D000975 1.6e-42 176.0 98 95.9
Haze_06155 Corylus avellana HOM05D000343 ORTHO05D000975 2.7e-42 175.3 98 93.9
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.3e-41 172.9 98 93.9
CiPaw.09G073800 Carya illinoinensis HOM05D000343 ORTHO05D000975 3.9e-33 144.8 102 75.5
Cfa007683 Carpinus fangiana HOM05D000343 ORTHO05D021090 4.3e-32 141.4 76 97.4
QL11p012985 Quercus lobata HOM05D000343 ORTHO05D000975 1.6e-31 139.4 98 76.5
CiPaw.10G062500 Carya illinoinensis HOM05D000343 ORTHO05D000975 8.1e-31 137.1 102 76.5
Dinv31173 Davidia involucrata HOM05D000343 ORTHO05D000975 1.5e-29 132.9 103 71.8
Cpa.g.sc30.132 Carica papaya HOM05D000343 ORTHO05D000975 6.4e-28 127.5 104 68.3
Hma1.2p1_0088F.1_g045010 Hydrangea macrophylla HOM05D000343 ORTHO05D000975 1.1e-27 126.7 101 69.3
Actinidia31364 Actinidia chinensis HOM05D000343 ORTHO05D021090 2.4e-27 125.6 101 69.3
Rhsim02G0169300 Rhododendron simsii HOM05D000343 ORTHO05D000975 9.3e-27 123.6 104 66.3
CSS0014840 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D000975 1.6e-26 122.9 106 65.1
Manes.16G060400 Manihot esculenta HOM05D000343 ORTHO05D000975 1.6e-26 122.9 115 60.9
MELO3C007027.2 Cucumis melo HOM05D000343 ORTHO05D000975 3.5e-26 121.7 107 67.3
Manes.03G074800 Manihot esculenta HOM05D000343 ORTHO05D000975 4.6e-26 121.3 115 62.6
ClCG01G025580 Citrullus lanatus HOM05D000343 ORTHO05D000975 6.0e-26 120.9 107 65.4
PGR004G2704 Punica granatum HOM05D000343 ORTHO05D000975 1.0e-25 120.2 102 65.7
TAR626G0885 Trochodendron aralioides HOM05D000343 ORTHO05D000975 1.0e-25 120.2 106 66.0
CsaV3_6G052820 Cucumis sativus L. HOM05D000343 ORTHO05D000975 1.3e-25 119.8 107 66.4
RcHm_v2.0_Chr5g0020701 Rosa chinensis HOM05D000343 ORTHO05D000975 1.8e-25 119.4 103 68.0
Thecc.02G005600 Theobroma cacao HOM05D000343 ORTHO05D000975 1.8e-25 119.4 104 65.4
Nn7g38284 Nelumbo nucifera HOM05D000343 ORTHO05D000975 3.0e-25 118.6 106 64.2
CANSAT35G0769 Cannabis sativa HOM05D000343 ORTHO05D000975 5.1e-25 117.9 102 65.7
Carub.0008s0346 Capsella rubella HOM05D000343 ORTHO05D000975 6.7e-25 117.5 103 65.0
Atru.chr10.410 Acer truncatum HOM05D000343 ORTHO05D000975 8.7e-25 117.1 100 67.0
TPR.G31241 Trifolium pratense HOM05D000343 ORTHO05D000975 8.7e-25 117.1 85 74.1
TWI15G0682 Tripterygium wilfordii HOM05D000343 ORTHO05D000975 8.7e-25 117.1 102 65.7
Ca_18246_v3 Cicer arietinum L. HOM05D000343 ORTHO05D000975 1.1e-24 116.7 91 69.2
TWI38G1614 Tripterygium wilfordii HOM05D000343 ORTHO05D000975 2.5e-24 115.5 100 66.0
Lj2C343G15 Lonicera japonica HOM05D000343 ORTHO05D000975 3.3e-24 115.2 104 63.5
Sed0022590 Sechium edule HOM05D000343 ORTHO05D000975 3.3e-24 115.2 107 62.6
Duzib248G0157 Durio zibethinus HOM05D000343 ORTHO05D000975 4.3e-24 114.8 108 62.0
FAN21G3394 Fragaria x ananassa HOM05D000343 ORTHO05D000975 4.3e-24 114.8 99 69.7
Eucgr.D00027 Eucalyptus grandis HOM05D000343 ORTHO05D000975 7.4e-24 114.0 111 64.0
MD05G1247900 Malus domestica HOM05D000343 ORTHO05D000975 7.4e-24 114.0 103 65.0
Aqoxy1G01417 Aquilegia oxysepala HOM05D000343 ORTHO05D000975 1.3e-23 113.2 104 59.6
Duzib132G0104 Durio zibethinus HOM05D000343 ORTHO05D000975 1.3e-23 113.2 108 62.0
THA.LOC104811764 Tarenaya hassleriana HOM05D000343 ORTHO05D000975 1.6e-23 112.8 114 60.5
CARHR178080 Cardamine hirsuta HOM05D000343 ORTHO05D000975 2.1e-23 112.5 109 57.8
Thhalv10000758m.g Eutrema salsugineum HOM05D000343 ORTHO05D000975 2.1e-23 112.5 112 58.9
arahy.Tifrunner.gnm1.ann1.8Q2P9V Arachis hypogaea HOM05D000343 ORTHO05D000975 2.8e-23 112.1 93 66.7
arahy.Tifrunner.gnm1.ann1.GR9FC3 Arachis hypogaea HOM05D000343 ORTHO05D000975 2.8e-23 112.1 93 66.7
Sp2g09640 Schrenkiella parvula HOM05D000343 ORTHO05D000975 2.8e-23 112.1 108 59.3
TAR624G1262 Trochodendron aralioides HOM05D000343 ORTHO05D000975 4.8e-23 111.3 105 63.8
COL.COLO4_17630 Corchorus olitorius HOM05D000343 ORTHO05D000975 6.2e-23 110.9 109 59.6
PSO675G5234 Papaver somniferum HOM05D000343 ORTHO05D000975 6.2e-23 110.9 111 58.6
Prupe.4G115900 Prunus persica HOM05D000343 ORTHO05D000975 6.2e-23 110.9 105 63.8
MD10G1228800 Malus domestica HOM05D000343 ORTHO05D000975 8.2e-23 110.5 103 64.1
Lsat_1_v5_gn_5_47401 Lactuca sativa HOM05D000343 ORTHO05D000975 1.1e-22 110.2 111 58.6
Nitab4.5_0000443g0130 Nicotiana tabacum HOM05D000343 ORTHO05D000975 1.1e-22 110.2 98 63.3
Sed0017485 Sechium edule HOM05D000343 ORTHO05D000975 1.1e-22 110.2 106 64.2
Potri.001G158900 Populus trichocarpa HOM05D000343 ORTHO05D000975 1.4e-22 109.8 110 60.9
Cc09_g05420 Coffea canephora HOM05D000343 ORTHO05D000975 2.4e-22 109.0 100 61.0
DCAR_001287 Daucus carota HOM05D000343 ORTHO05D000975 2.4e-22 109.0 82 72.0
Gohir.A12G048300 Gossypium hirsutum HOM05D000343 ORTHO05D000975 2.4e-22 109.0 110 61.8
Lalb_Chr15g0083811 Lupinus albus HOM05D000343 ORTHO05D000975 2.4e-22 109.0 96 63.5
PSO541G2797 Papaver somniferum HOM05D000343 ORTHO05D000975 2.4e-22 109.0 115 56.5
AL8G14730 Arabidopsis lyrata HOM05D000343 ORTHO05D000975 3.1e-22 108.6 109 59.6
CDE06G1492 Ceratophyllum demersum HOM05D000343 ORTHO05D000975 3.1e-22 108.6 104 57.7
DCAR_031378 Daucus carota HOM05D000343 ORTHO05D021090 3.1e-22 108.6 83 71.1
FAN25G2128 Fragaria x ananassa HOM05D000343 ORTHO05D000975 3.1e-22 108.6 99 66.7
Sabra01G0132900 Salix brachista HOM05D000343 ORTHO05D000975 3.1e-22 108.6 110 59.1
Aa31LG6G2420 Aethionema arabicum HOM05D000343 ORTHO05D000975 5.3e-22 107.8 110 59.1
arahy.Tifrunner.gnm1.ann1.H8X8VQ Arachis hypogaea HOM05D000343 ORTHO05D000975 6.9e-22 107.5 101 59.4
Glyma.09G052000 Glycine max HOM05D000343 ORTHO05D000975 6.9e-22 107.5 98 61.2
BcaC06g31586 Brassica carinata HOM05D000343 ORTHO05D000975 9.0e-22 107.1 104 60.6
Solyc02g068490.4 Solanum lycopersicum HOM05D000343 ORTHO05D000975 9.0e-22 107.1 102 59.8
BcaC06g34504 Brassica carinata HOM05D000343 ORTHO05D000975 1.2e-21 106.7 106 58.5
A06p46880 Brassica napus HOM05D000343 ORTHO05D000975 1.5e-21 106.3 106 59.4
BraA06t27561Z Brassica rapa HOM05D000343 ORTHO05D000975 1.5e-21 106.3 106 59.4
Sopen02g017630 Solanum pennellii HOM05D000343 ORTHO05D000975 1.5e-21 106.3 102 59.8
PGSC0003DMG400009436 Solanum tuberosum HOM05D000343 ORTHO05D000975 1.5e-21 106.3 101 60.4
THA.LOC104806219 Tarenaya hassleriana HOM05D000343 ORTHO05D000975 1.5e-21 106.3 114 57.0
ECA246G1037 Erigeron canadensis HOM05D000343 ORTHO05D000975 2.0e-21 105.9 98 58.2
arahy.Tifrunner.gnm1.ann1.XIB6CP Arachis hypogaea HOM05D000343 ORTHO05D000975 2.6e-21 105.5 89 66.3
A09p21340 Brassica napus HOM05D000343 ORTHO05D000975 2.6e-21 105.5 110 55.5
HanXRQChr12g0378131 Helianthus annuus HOM05D000343 ORTHO05D000975 2.6e-21 105.5 101 59.4
Gohir.D12G047100 Gossypium hirsutum HOM05D000343 ORTHO05D000975 3.4e-21 105.1 110 60.0
Gorai.008G049700 Gossypium raimondii HOM05D000343 ORTHO05D000975 3.4e-21 105.1 110 60.0
AT5G44790 Arabidopsis thaliana HOM05D000343 ORTHO05D000975 4.5e-21 104.8 107 57.9
Phvul.009G241800 Phaseolus vulgaris HOM05D000343 ORTHO05D000975 4.5e-21 104.8 98 60.2
BolC7t43309H Brassica oleracea HOM05D000343 ORTHO05D000975 5.8e-21 104.4 106 57.5
Nitab4.5_0007772g0010 Nicotiana tabacum HOM05D000343 ORTHO05D000975 5.8e-21 104.4 98 60.2
arahy.Tifrunner.gnm1.ann1.PPR7D4 Arachis hypogaea HOM05D000343 ORTHO05D000975 7.6e-21 104.0 101 57.4
C07p27770 Brassica napus HOM05D000343 ORTHO05D000975 7.6e-21 104.0 103 59.2
BolC9t55599H Brassica oleracea HOM05D000343 ORTHO05D000975 7.6e-21 104.0 110 54.5
Medtr4g094695 Medicago truncatula HOM05D000343 ORTHO05D000975 7.6e-21 104.0 87 64.4
BcaC04g21815 Brassica carinata HOM05D000343 ORTHO05D000975 1.0e-20 103.6 110 54.5
C09p27180 Brassica napus HOM05D000343 ORTHO05D000975 1.0e-20 103.6 110 54.5
Hund17872 Selenicereus undatus HOM05D000343 ORTHO05D000975 1.3e-20 103.2 108 56.5
SalBow7G3790 Salvia bowleyana HOM05D000343 ORTHO05D000975 2.2e-20 102.4 101 57.4
Lalb_Chr07g0188341 Lupinus albus HOM05D000343 ORTHO05D000975 3.8e-20 101.7 101 58.4
Medtr2g035840 Medicago truncatula HOM05D000343 ORTHO05D000975 4.9e-20 101.3 101 59.4
BcaB07g30924 Brassica carinata HOM05D000343 ORTHO05D000975 6.5e-20 100.9 114 51.8
Sabra03G0046200 Salix brachista HOM05D000343 ORTHO05D000975 6.5e-20 100.9 106 58.5
Ciclev10014141m.g Citrus clementina HOM05D000343 ORTHO05D000975 8.4e-20 100.5 98 61.2
Lj6g0027980 Lotus japonicus HOM05D000343 ORTHO05D000975 1.1e-19 100.1 102 59.8
Potri.003G075700 Populus trichocarpa HOM05D000343 ORTHO05D000975 1.1e-19 100.1 108 60.2
AUR62040482 Chenopodium quinoa HOM05D000343 ORTHO05D000975 1.4e-19 99.8 98 60.2
Nitab4.5_0008021g0010 Nicotiana tabacum HOM05D000343 ORTHO05D000975 1.4e-19 99.8 98 60.2
AUR62042799 Chenopodium quinoa HOM05D000343 ORTHO05D000975 2.5e-19 99.0 98 60.2
VMungo0251G3666 Vigna mungo HOM05D000343 ORTHO05D000975 2.5e-19 99.0 98 63.3
VMungo1309G2201 Vigna mungo HOM05D000343 ORTHO05D000975 2.5e-19 99.0 100 57.0
Glyma.15G158300 Glycine max HOM05D000343 ORTHO05D000975 3.2e-19 98.6 102 57.8
Nitab4.5_0000138g0130 Nicotiana tabacum HOM05D000343 ORTHO05D000975 3.2e-19 98.6 98 56.1
Phvul.002G190000 Phaseolus vulgaris HOM05D000343 ORTHO05D000975 3.2e-19 98.6 98 63.3
Ah.15g091900 Amaranthus hybridus HOM05D000343 ORTHO05D000975 4.2e-19 98.2 102 54.9
Glyma.05G132900 Glycine max HOM05D000343 ORTHO05D000975 4.2e-19 98.2 98 61.2
Lj4g0015974 Lotus japonicus HOM05D000343 ORTHO05D000975 7.1e-19 97.4 88 68.2
ECA232G4854 Erigeron canadensis HOM05D000343 ORTHO05D000975 9.3e-19 97.1 116 52.6
Lsat_1_v5_gn_8_117941 Lactuca sativa HOM05D000343 ORTHO05D000975 9.3e-19 97.1 113 53.1
Aa31LG9G8380 Aethionema arabicum HOM05D000343 ORTHO05D000975 1.2e-18 96.7 109 54.1
Glyma.08G087300 Glycine max HOM05D000343 ORTHO05D000975 1.2e-18 96.7 98 60.2
EL10Ac7g17239 Beta vulgaris HOM05D000343 ORTHO05D000975 1.6e-18 96.3 101 55.4
DCAR_003767 Daucus carota HOM05D000343 ORTHO05D000975 2.1e-18 95.9 106 58.5
Psat1g149800 Pisum sativum HOM05D000343 ORTHO05D000975 4.6e-18 94.7 97 59.8
Oeu052641.2 Olea europaea HOM05D000343 ORTHO05D021090 7.9e-18 94.0 100 57.0
MBI02_g08254_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D000975 2.3e-17 92.4 99 54.5
Oeu056056.1 Olea europaea HOM05D000343 ORTHO05D000975 3.9e-17 91.7 73 65.8
HanXRQChr15g0487371 Helianthus annuus HOM05D000343 ORTHO05D000975 5.1e-17 91.3 105 53.3
MSTRG.16366 Avicennia marina HOM05D000343 ORTHO05D000975 6.7e-17 90.9 99 56.6
ATR0763G107 Amborella trichopoda HOM05D000343 ORTHO05D000975 8.7e-17 90.5 102 54.9
CAN.G1299.9 Capsicum annuum HOM05D000343 ORTHO05D000975 1.9e-16 89.4 81 60.5
HPP92_016425 Vanilla planifolia HOM05D000343 ORTHO05D000975 1.9e-16 89.4 107 49.5
HPP92_026364 Vanilla planifolia HOM05D000343 ORTHO05D000975 2.5e-16 89.0 107 48.6
Migut.M02001 Erythranthe guttata HOM05D000343 ORTHO05D000975 3.3e-16 88.6 92 56.5
vmacro11008 Vaccinium macrocarpon HOM05D000343 ORTHO05D000975 3.3e-16 88.6 82 62.2
unitig_747.g21639 Utricularia gibba HOM05D000343 ORTHO05D000975 5.7e-16 87.8 97 54.6
Peaxi162Scf00199g00810 Petunia axillaris HOM05D000343 ORTHO05D000975 1.6e-15 86.3 88 55.7
SEGI_37469 Sequoiadendron giganteum HOM05D000343 ORTHO05D000975 8.2e-15 84.0 98 52.0
SGA_v2.0_scaffold175G39348 Striga asiatica HOM05D000343 ORTHO05D000975 1.4e-14 83.2 95 53.7
SalBow8G0685 Salvia bowleyana HOM05D000343 ORTHO05D000975 2.4e-14 82.4 98 50.0
Zm00001eb207090 Zea mays HOM05D000343 ORTHO05D000975 5.3e-14 81.3 97 49.5
Aqoxy72s002 Aquilegia oxysepala HOM05D000343 ORTHO05D000975 9.0e-14 80.5 56 66.1
GSVIVG01012131001 Vitis vinifera HOM05D000343 ORTHO05D000975 2.0e-13 79.3 51 78.4
MSTRG.7605 Avicennia marina HOM05D000343 ORTHO05D000975 3.4e-13 78.6 101 50.5
SGA_v2.0_scaffold298G47705 Striga asiatica HOM05D000343 ORTHO05D000975 4.5e-13 78.2 97 51.5
Os02g0172600 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D000975 1.2e-10 70.1 96 45.8
Mapoly0050s0132 Marchantia polymorpha HOM05D000343 ORTHO05D000975 2.7e-10 68.9 107 44.9
TPR.G31847 Trifolium pratense HOM05D000343 ORTHO05D000975 3.0e-09 65.5 42 71.4
Zm00001eb389830 Zea mays HOM05D000343 ORTHO05D000975 3.0e-09 65.5 107 42.1
Pp3c20_13520 Physcomitrium patens HOM05D000343 ORTHO05D000975 4.3e-08 61.6 80 45.0
Pp3c8_13750 Physcomitrium patens HOM05D000343 ORTHO05D000975 1.7e-07 59.7 101 41.6
SMO268G0045 Selaginella moellendorffii HOM05D000343 ORTHO05D000975 8.2e-07 57.4 82 48.8
Os06g0665800 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D000975 3.1e-06 55.5 53 50.9
Cre16.g682369 Chlamydomonas reinhardtii HOM05D000343 ORTHO05D000975 4.1e-06 55.1 46 60.9
CDE05G2930 Ceratophyllum demersum HOM05D000343 ORTHO05D021090 5.3e-06 54.7 45 57.8
Ah.02g116540 Amaranthus hybridus HOM05D000343 ORTHO05D000975 6.9e-06 54.3 63 49.2
C03p38340 Brassica napus HOM05D000343 ORTHO05D000975 6.9e-06 54.3 85 42.4
BcaB01g02388 Brassica carinata HOM05D000343 ORTHO05D000975 9.1e-06 53.9 61 47.5


User provided reference genes

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