Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 2.4e-160 568.9 322 100.0
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.4e-154 548.5 289 96.5
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 7.4e-117 424.5 289 77.5
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 3.2e-112 409.1 296 74.7
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 9.1e-107 391.0 291 70.8
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 7.7e-106 387.9 291 72.5
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 1.6e-103 380.2 290 72.4
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 2.3e-102 376.3 289 72.3
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.9e-102 375.6 290 69.0
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.5e-101 373.6 289 70.2
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.7e-100 370.2 289 70.2
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 2.2e-100 369.8 293 68.9
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 2.2e-100 369.8 293 68.9
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.2e-100 369.8 291 68.4
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 2.2e-100 369.8 289 70.6
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 2.8e-100 369.4 291 68.0
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.8e-100 369.4 291 68.0
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 1.1e-99 367.5 291 68.7
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.4e-99 366.3 291 67.7
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 3.1e-99 365.9 293 67.2
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.0e-99 364.8 291 68.0
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 7.0e-99 364.8 290 68.6
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 7.0e-99 364.8 289 69.2
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.2e-98 364.0 287 69.0
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.6e-98 362.8 304 68.1
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.3e-97 360.5 285 70.2
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 5.0e-97 358.6 307 66.1
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 2.5e-96 356.3 291 67.7
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 3.2e-96 355.9 292 66.8
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 5.5e-96 355.1 287 67.2
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 5.5e-96 355.1 288 67.0
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 2.1e-95 353.2 289 67.5
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 4.0e-94 349.0 287 64.8
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.5e-93 347.1 289 66.1
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.6e-93 346.3 286 66.4
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 4.4e-93 345.5 302 65.9
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 7.5e-93 344.7 288 65.6
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 9.7e-93 344.4 295 65.4
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 3.7e-92 342.4 291 66.7
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 6.3e-92 341.7 286 64.0
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 8.2e-92 341.3 289 65.1
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.0e-90 336.7 272 65.8
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.3e-89 334.0 303 63.4
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.2e-85 320.9 295 62.7
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.5e-82 308.9 290 64.1
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 1.5e-80 303.9 282 63.1
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 7.2e-80 301.6 287 61.7
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.7e-79 299.7 292 60.6
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.4e-78 297.4 286 61.2
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 3.4e-77 292.7 291 59.8
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 7.5e-77 291.6 298 60.4
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 7.5e-77 291.6 302 58.3
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.3e-76 290.8 298 60.1
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 4.9e-76 288.9 290 61.0
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.4e-75 286.6 294 59.2
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 5.4e-75 285.4 290 60.3
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 7.0e-75 285.0 296 59.8
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 9.2e-75 284.6 287 59.2
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.2e-74 284.3 295 58.0
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.6e-74 283.9 298 59.4
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 2.7e-74 283.1 295 55.9
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 4.5e-74 282.3 320 55.0
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 4.5e-74 282.3 320 55.0
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 4.5e-74 282.3 307 56.7
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 5.9e-74 282.0 286 58.7
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 7.7e-74 281.6 303 58.7
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 5.0e-73 278.9 308 54.5
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 8.6e-73 278.1 292 57.5
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.5e-72 276.6 244 63.5
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 3.3e-72 276.2 297 55.6
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 7.3e-72 275.0 281 56.9
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.6e-71 273.9 291 58.1
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.6e-71 273.9 300 57.7
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 1.6e-71 273.9 297 54.9
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 2.8e-71 273.1 297 57.9
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 3.0e-70 269.6 287 54.7
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 1.5e-69 267.3 302 55.3
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 1.5e-69 267.3 293 55.3
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 2.6e-69 266.5 289 58.1
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 3.4e-69 266.2 327 51.7
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 9.8e-69 264.6 296 52.4
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.3e-68 264.2 299 55.5
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.7e-68 263.8 293 55.6
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 2.2e-68 263.5 286 55.2
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 6.4e-68 261.9 293 55.3
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.1e-67 261.2 293 51.2
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 2.4e-67 260.0 295 53.6
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 3.2e-67 259.6 289 56.4
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 5.4e-67 258.8 291 54.0
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 9.2e-67 258.1 286 53.5
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.0e-66 256.9 294 55.1
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.0e-66 256.9 299 54.5
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 4.6e-66 255.8 289 53.6
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 4.6e-66 255.8 256 60.5
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 4.6e-66 255.8 293 54.6
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 7.8e-66 255.0 286 55.6
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.0e-65 254.6 291 53.3
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.7e-65 253.8 287 54.4
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 3.0e-65 253.1 311 54.0
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 8.6e-65 251.5 289 54.7
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.1e-64 251.1 297 53.5
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.5e-64 250.8 302 52.0
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.5e-64 250.8 297 53.2
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 3.3e-64 249.6 310 51.6
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 1.2e-63 247.7 242 59.9
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.6e-63 247.3 303 50.5
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 4.7e-63 245.7 294 51.0
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.3e-62 243.4 275 53.1
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 2.0e-61 240.4 298 51.3
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 2.6e-61 240.0 286 50.7
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 5.8e-61 238.8 291 51.2
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 9.8e-61 238.0 290 53.8
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.3e-60 237.7 283 50.9
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 2.4e-59 233.4 309 47.2
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 9.2e-59 231.5 274 52.6
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.7e-58 229.9 262 57.3
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 6.0e-58 228.8 272 52.6
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 3.0e-57 226.5 307 48.2
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 8.6e-57 224.9 288 51.0
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 6.2e-55 218.8 335 43.0
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.8e-53 212.2 246 52.4
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 7.5e-53 211.8 162 69.1
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 7.5e-53 211.8 299 48.5
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.9e-51 207.2 288 47.9
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 2.4e-51 206.8 298 47.7
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.4e-51 205.7 207 56.0
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 9.2e-51 204.9 223 54.7
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.2e-50 204.5 301 46.8
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-48 198.0 223 53.4
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 8.9e-46 188.3 292 42.1
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 1.3e-44 184.5 163 60.1
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 2.9e-44 183.3 138 65.9
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 6.4e-44 182.2 301 42.5
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 8.4e-44 181.8 298 41.3
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.1e-42 177.2 184 52.7
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 6.0e-42 175.6 126 69.8
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.9e-40 170.6 286 40.6
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 2.5e-40 170.2 293 43.0
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.3e-40 169.9 162 59.3
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 2.1e-39 167.2 288 43.4
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 7.1e-35 152.1 285 38.6
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 9.3e-35 151.8 162 54.3
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 2.7e-34 150.2 126 69.0
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 3.5e-34 149.8 264 40.5
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.7e-33 147.5 239 44.4
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.9e-32 144.1 130 58.5
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 4.3e-32 142.9 291 36.4
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 7.3e-32 142.1 222 41.9
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 6.2e-31 139.0 292 35.3
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.5e-29 134.4 287 36.9
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 3.8e-28 129.8 77 77.9
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 8.4e-28 128.6 276 37.3
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 7.1e-27 125.6 145 46.2
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 2.7e-26 123.6 178 46.6
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.3e-17 94.0 110 56.4
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 3.9e-17 93.2 171 40.4
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.5e-13 81.3 162 40.7
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.0e-13 80.9 135 45.9
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 4.9e-12 76.3 52 76.9
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 5.5e-11 72.8 57 57.9
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.1e-10 70.9 48 62.5
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 7.9e-10 68.9 106 45.3
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 1.8e-09 67.8 114 43.9
Medtr7g114200 Medicago truncatula HOM05D063531 ORTHO05D005140 1.8e-06 57.8 40 60.0


User provided reference genes

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