Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.5e-127 459.5 225 100.0
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 7.0e-114 414.1 227 89.4
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.0e-113 412.5 225 88.4
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 5.7e-108 394.4 279 73.1
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 7.5e-108 394.0 225 85.3
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 1.7e-107 392.9 225 84.4
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 2.8e-107 392.1 225 84.4
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 4.9e-107 391.3 225 86.2
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 6.3e-107 391.0 225 84.9
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 6.3e-107 391.0 225 85.3
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-106 390.2 225 84.4
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 7.0e-106 387.5 225 84.4
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 1.2e-105 386.7 225 85.3
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 2.7e-105 385.6 225 82.7
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 4.5e-105 384.8 225 84.4
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 7.7e-105 384.0 225 84.0
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.0e-104 383.6 225 86.7
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.0e-104 383.6 225 84.0
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.0e-104 383.6 225 84.0
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.3e-104 383.3 225 83.6
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.3e-104 382.5 225 84.4
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 5.0e-104 381.3 225 83.1
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.1e-103 380.2 225 80.9
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 4.2e-103 378.3 225 81.3
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 4.2e-103 378.3 225 81.3
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 9.5e-103 377.1 225 83.1
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.2e-102 376.7 225 81.3
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 1.6e-102 376.3 225 83.6
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.8e-102 375.6 225 83.1
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.7e-102 374.8 225 83.1
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 6.1e-102 374.4 225 83.1
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 1.0e-101 373.6 225 80.4
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.4e-101 373.2 225 82.7
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 2.3e-101 372.5 224 82.1
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 3.0e-101 372.1 226 81.9
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 5.2e-101 371.3 225 81.3
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 1.5e-100 369.8 224 81.2
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.5e-100 369.8 223 78.9
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 2.6e-100 369.0 225 80.0
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 3.4e-100 368.6 225 80.9
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 3.4e-100 368.6 225 79.6
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 5.7e-100 367.9 225 80.9
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 7.5e-100 367.5 225 77.3
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 7.5e-100 367.5 225 82.2
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 9.8e-100 367.1 225 80.4
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 1.3e-99 366.7 225 80.4
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.3e-99 366.7 225 76.9
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 2.2e-99 365.9 225 79.6
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.2e-99 365.9 226 80.5
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.2e-99 365.9 226 80.5
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 2.2e-99 365.9 225 76.4
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 4.9e-99 364.8 225 78.2
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 4.9e-99 364.8 225 76.4
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 5.4e-98 361.3 197 88.8
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 1.2e-97 360.1 260 71.5
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 2.0e-97 359.4 225 77.8
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 2.0e-97 359.4 225 76.9
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 7.8e-97 357.5 225 79.1
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 8.6e-96 354.0 197 86.3
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 1.1e-95 353.6 225 78.2
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 1.5e-95 353.2 226 75.7
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.9e-95 352.8 225 77.8
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 1.9e-95 352.8 226 75.7
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 2.5e-95 352.4 225 76.9
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 3.3e-95 352.1 225 74.7
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 4.3e-95 351.7 225 77.8
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 4.3e-95 351.7 225 78.2
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 4.3e-95 351.7 225 76.9
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 4.3e-95 351.7 225 76.4
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 5.6e-95 351.3 225 76.9
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 9.5e-95 350.5 228 75.4
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 1.6e-94 349.7 225 76.9
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 2.8e-94 349.0 225 77.3
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 3.6e-94 348.6 225 76.4
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 4.7e-94 348.2 225 76.4
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 4.7e-94 348.2 225 76.4
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 8.0e-94 347.4 225 76.0
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 1.0e-93 347.1 225 76.0
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 5.2e-93 344.7 225 74.2
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 6.8e-93 344.4 225 76.0
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 1.2e-92 343.6 232 73.7
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 3.4e-92 342.0 225 73.8
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 74.2
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 5.8e-92 341.3 225 74.7
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 5.8e-92 341.3 225 72.4
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 7.5e-92 340.9 227 76.2
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 2.2e-91 339.3 226 74.8
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 1.4e-90 336.7 225 72.4
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.9e-90 336.3 228 73.7
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.2e-90 335.5 266 65.4
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 3.2e-90 335.5 225 70.7
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 4.1e-90 335.1 225 70.7
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 4.1e-90 335.1 206 80.6
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 2.7e-89 332.4 225 72.4
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.7e-88 329.7 225 71.1
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 1.7e-88 329.7 227 70.9
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 3.0e-88 328.9 225 73.8
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 3.0e-88 328.9 227 71.4
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 1.2e-86 323.6 225 71.6
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 1.6e-86 323.2 225 71.6
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 3.6e-86 322.0 225 71.6
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 5.8e-84 314.7 225 72.4
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 7.5e-84 314.3 225 70.7
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 1.4e-82 310.1 217 67.7
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 2.4e-82 309.3 177 84.7
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 3.5e-81 305.4 225 71.1
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 4.3e-79 298.5 227 62.6
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 5.6e-79 298.1 225 63.1
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 4.9e-75 285.0 228 63.6
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 3.2e-74 282.3 174 79.3
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 5.4e-74 281.6 210 64.8
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.6e-73 280.0 225 68.4
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 4.6e-73 278.5 225 65.8
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 4.3e-71 271.9 226 61.5
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 2.1e-70 269.6 243 58.8
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 2.1e-70 269.6 252 60.7
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 2.1e-70 269.6 252 60.7
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 1.4e-69 266.9 229 65.9
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 7.6e-68 261.2 225 57.3
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.3e-67 260.4 250 59.2
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 1.4e-58 230.3 164 72.0
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 9.6e-55 217.6 225 51.6
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 9.6e-55 217.6 225 49.8
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 3.1e-53 212.6 220 49.5
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 9.0e-53 211.1 122 81.1
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 1.1e-45 187.6 206 46.6
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 1.8e-45 186.8 226 44.2
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 4.2e-42 175.6 130 67.7
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 4.6e-41 172.2 209 43.1
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 1.5e-39 167.2 206 49.5
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.3e-38 164.1 100 79.0
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.7e-38 162.5 100 78.0
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 8.7e-32 141.4 150 52.0
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.7e-27 127.1 72 79.2
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 5.7e-23 112.1 66 74.2
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 2.2e-19 100.1 78 60.3
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.9e-19 99.8 105 53.3
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 5.5e-18 95.5 122 48.4
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.1e-17 93.6 51 84.3
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.6e-17 92.8 51 82.4
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.6e-17 92.8 51 82.4
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.9e-17 91.7 51 82.4
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 1.0e-16 91.3 77 61.0
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.3e-16 90.1 79 60.8
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.1e-13 81.3 232 31.5
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 2.9e-11 73.2 51 72.5
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 3.8e-11 72.8 41 80.5
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.9e-10 70.5 51 72.5
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 4.2e-10 69.3 51 64.7
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 4.7e-09 65.9 56 64.3


User provided reference genes

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