Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 0.0e+00 1313.9 687 100.0
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 0.0e+00 1206.4 689 93.9
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 2.6e-252 875.5 702 69.4
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 5.8e-252 874.4 703 69.7
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 2.0e-244 849.4 678 68.4
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 4.6e-217 758.4 687 63.0
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 7.0e-157 558.5 703 49.2
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 1.8e-149 533.9 705 48.9
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 3.5e-148 529.6 721 47.2
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 3.1e-144 516.5 708 47.0
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.0e-143 513.8 704 47.2
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 9.8e-143 511.5 707 47.0
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 2.2e-142 510.4 698 48.7
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 3.7e-142 509.6 732 48.2
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 2.7e-140 503.4 721 46.5
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 8.6e-139 498.4 704 46.9
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 8.6e-139 498.4 704 46.9
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 3.3e-138 496.5 673 48.6
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 1.2e-135 488.0 725 45.9
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 3.4e-135 486.5 701 47.5
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.7e-134 484.2 668 46.3
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 5.6e-130 469.2 726 44.6
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 1.2e-129 468.0 699 44.5
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 2.2e-126 457.2 692 43.2
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 2.2e-126 457.2 382 68.6
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 8.4e-126 455.3 741 43.3
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 8.6e-123 445.3 704 43.3
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 1.8e-120 437.6 711 43.2
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 1.9e-117 427.6 730 40.7
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 9.3e-117 425.2 680 44.0
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 3.5e-116 423.3 701 41.9
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 2.5e-114 417.2 704 42.0
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 6.2e-113 412.5 657 43.7
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 1.1e-112 411.8 700 41.3
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 5.8e-111 406.0 696 40.5
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 6.4e-110 402.5 705 42.0
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 3.2e-109 400.2 665 42.1
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 7.1e-109 399.1 724 39.6
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 1.2e-108 398.3 705 40.7
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.0e-107 395.2 573 43.6
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 1.3e-107 394.8 684 42.4
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 7.4e-106 389.0 648 41.5
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 2.4e-104 384.0 719 39.1
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 9.3e-101 372.1 578 44.8
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 1.3e-97 361.7 704 38.2
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 3.1e-96 357.1 709 40.2
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 1.2e-95 355.1 715 38.3
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 5.8e-95 352.8 696 40.2
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 1.3e-94 351.7 694 38.8
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 1.7e-94 351.3 696 39.8
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 1.1e-90 338.6 663 39.7
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.3e-89 335.1 587 39.9
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 1.6e-89 334.7 673 38.0
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 1.4e-88 331.6 460 45.0
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 1.5e-87 328.2 652 37.3
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 5.0e-86 323.2 686 36.9
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 6.5e-86 322.8 673 37.3
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 7.2e-85 319.3 711 35.6
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 3.0e-83 313.9 705 36.0
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 6.7e-83 312.8 629 37.7
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 2.8e-81 307.4 715 35.2
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 2.4e-80 304.3 718 35.1
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 5.3e-80 303.1 543 40.9
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 9.0e-80 302.4 696 36.4
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 1.3e-78 298.5 702 36.3
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 3.8e-78 297.0 695 35.4
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 5.5e-77 293.1 681 36.6
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 1.0e-75 288.9 682 34.3
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 2.0e-74 284.6 681 36.1
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 2.2e-73 281.2 470 44.5
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 2.8e-73 280.8 680 35.6
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 3.1e-72 277.3 570 36.8
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 2.0e-71 274.6 579 38.3
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 3.4e-71 273.9 728 32.8
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 5.9e-71 273.1 702 33.5
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 2.2e-70 271.2 705 34.2
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 9.4e-69 265.8 677 34.9
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 6.7e-67 259.6 697 34.9
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 3.1e-64 250.8 734 32.2
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 9.1e-64 249.2 604 35.8
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 4.5e-63 246.9 492 37.2
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 2.9e-62 244.2 703 34.0
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 2.5e-61 241.1 484 37.4
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 1.8e-59 235.0 881 31.0
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 2.9e-54 217.6 472 33.9
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 2.5e-53 214.5 653 32.2
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 2.1e-52 211.5 690 32.0
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 2.3e-51 208.0 263 46.0
Migut.N03024 Erythranthe guttata HOM05D007315 ORTHO05D008940 9.1e-48 196.1 605 32.4
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 4.5e-47 193.7 553 32.4
A05p04140 Brassica napus HOM05D007315 ORTHO05D008940 3.8e-46 190.7 672 31.1
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 1.1e-45 189.1 658 30.4
BraA05t19400Z Brassica rapa HOM05D007315 ORTHO05D008940 3.0e-43 181.0 544 32.9
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 2.2e-41 174.9 462 33.1
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 9.2e-40 169.5 686 29.6
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 7.3e-37 159.8 745 28.7
BcaC02g12347 Brassica carinata HOM05D007315 ORTHO05D008940 2.8e-36 157.9 425 34.1
SGA_v2.0_scaffold19G08894 Striga asiatica HOM05D007315 ORTHO05D008940 2.3e-35 154.8 694 28.4
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 8.9e-35 152.9 697 27.8
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 1.5e-26 125.6 459 31.6
Duzib093G0367 Durio zibethinus HOM05D007315 ORTHO05D008940 1.3e-25 122.5 302 36.4
Os11g0247500 Oryza sativa ssp. japonica HOM05D019859 ORTHO05D008940 4.6e-23 114.0 497 27.8
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 2.3e-22 111.7 485 26.2
Actinidia39246 Actinidia chinensis HOM05D007315 ORTHO05D008940 3.3e-21 107.8 275 31.3
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 1.5e-18 99.0 263 32.7
Zm00001eb136730 Zea mays HOM05D019859 ORTHO05D008940 7.1e-16 90.1 420 26.4
unitig_578.g16246 Utricularia gibba HOM05D007315 ORTHO05D008940 9.5e-13 79.7 175 35.4


User provided reference genes

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