Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 2.8e-183 645.2 332 100.0
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 5.0e-177 624.4 335 96.1
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.2e-151 540.0 316 86.1
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.0e-149 532.7 332 80.4
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 3.6e-143 511.9 339 79.6
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 1.1e-139 500.4 339 75.5
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 9.6e-136 487.3 297 78.5
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 1.3e-135 486.9 339 73.2
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 2.8e-135 485.7 333 71.5
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 1.1e-134 483.8 296 76.7
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.1e-134 482.3 296 77.7
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 3.1e-134 482.3 328 72.9
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 3.1e-134 482.3 292 78.8
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.1e-134 482.3 296 76.4
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 5.3e-134 481.5 302 74.8
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 1.2e-133 480.3 329 74.5
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 2.0e-133 479.6 329 71.4
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 2.0e-133 479.6 329 71.4
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 2.6e-133 479.2 304 75.0
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 2.6e-133 479.2 296 77.0
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 3.4e-133 478.8 304 74.0
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 4.5e-133 478.4 324 71.0
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 9.9e-133 477.2 332 71.7
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 8.4e-132 474.2 293 77.8
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 1.4e-131 473.4 300 75.0
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.9e-131 473.0 292 76.4
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 3.2e-131 472.2 327 69.7
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.2e-131 471.9 296 77.4
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 9.3e-131 470.7 298 74.5
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 1.2e-130 470.3 296 78.0
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 2.1e-130 469.5 330 70.0
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 3.5e-130 468.8 292 75.7
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 6.0e-130 468.0 331 69.8
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 2.3e-129 466.1 305 75.1
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 1.1e-128 463.8 342 67.8
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.1e-128 463.8 330 70.3
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.5e-128 463.4 335 71.6
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.5e-128 463.4 326 73.3
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 3.3e-128 462.2 335 66.9
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 4.3e-128 461.8 296 72.6
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 7.4e-128 461.1 301 73.1
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 7.4e-128 461.1 297 75.1
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 7.4e-128 461.1 328 69.2
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 7.4e-128 461.1 292 74.0
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 9.6e-128 460.7 292 74.0
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 9.6e-128 460.7 292 74.0
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.1e-126 457.2 328 70.4
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 2.4e-126 456.1 292 74.7
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 4.0e-126 455.3 335 68.1
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 4.0e-126 455.3 335 68.1
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 5.3e-126 454.9 290 76.2
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 9.0e-126 454.1 292 74.0
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.2e-125 453.8 333 67.9
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 1.5e-125 453.4 337 67.7
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 5.8e-125 451.4 313 70.9
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 5.8e-125 451.4 302 72.2
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 7.6e-125 451.1 294 74.5
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.6e-125 451.1 290 75.2
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 1.3e-124 450.3 295 73.9
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 1.7e-124 449.9 290 75.9
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 2.9e-124 449.1 333 70.0
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 1.1e-123 447.2 332 68.7
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.1e-123 447.2 353 62.9
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.9e-123 446.4 336 67.0
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 3.2e-123 445.7 335 70.7
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 7.1e-123 444.5 294 72.8
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 6.0e-122 441.4 302 70.5
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 7.9e-122 441.0 294 71.8
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 1.0e-121 440.7 302 72.8
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 1.3e-121 440.3 301 70.8
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 6.7e-121 438.0 334 67.1
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 6.7e-121 438.0 301 70.1
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 6.7e-121 438.0 304 69.1
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.1e-120 437.2 333 65.5
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.5e-120 436.0 296 70.6
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 2.5e-120 436.0 297 71.0
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 4.3e-120 435.3 335 66.0
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 4.3e-120 435.3 335 66.0
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 7.4e-120 434.5 294 71.8
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 9.6e-120 434.1 295 71.5
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 9.6e-120 434.1 297 71.0
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 2.1e-119 433.0 303 70.0
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 2.8e-119 432.6 296 71.3
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.7e-119 432.2 296 70.9
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 8.2e-119 431.0 333 64.3
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.1e-118 430.6 291 70.4
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.1e-118 430.6 291 70.4
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 1.4e-118 430.3 308 68.2
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.4e-118 430.3 341 64.5
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.2e-117 427.2 291 69.8
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 1.2e-117 427.2 293 70.0
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.0e-117 426.4 290 73.1
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 3.4e-117 425.6 299 69.9
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.7e-116 423.3 304 66.4
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 6.5e-116 421.4 294 69.4
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 4.6e-114 415.2 287 70.0
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.0e-113 414.1 305 66.6
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 1.3e-113 413.7 291 69.4
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.5e-112 410.2 298 67.4
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 1.3e-111 407.1 333 60.1
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 8.2e-111 404.4 328 62.5
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.1e-110 404.1 271 70.8
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.7e-108 396.7 296 67.2
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.9e-108 396.0 335 64.5
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.5e-107 392.9 335 63.9
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 3.2e-107 392.5 301 61.8
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.2e-107 392.1 335 64.2
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.6e-106 390.2 293 66.6
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 3.9e-105 385.6 301 63.5
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.7e-103 380.2 339 56.9
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.2e-103 379.8 338 59.2
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.5e-96 357.1 291 60.8
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 1.3e-95 354.0 286 59.1
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 2.4e-94 349.7 305 56.1
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 3.1e-94 349.4 291 61.5
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 6.9e-94 348.2 272 64.0
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 3.9e-89 332.4 304 59.5
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 5.2e-89 332.0 273 63.7
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 7.7e-85 318.2 257 67.3
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 3.8e-84 315.8 313 53.7
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 4.8e-79 298.9 364 44.0
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 6.3e-79 298.5 196 75.0
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 6.5e-76 288.5 291 47.8
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 6.1e-74 282.0 264 56.8
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 4.4e-72 275.8 296 45.6
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.7e-72 275.4 198 71.2
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 5.4e-70 268.9 288 45.5
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.0e-68 264.6 293 46.4
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.1e-66 256.9 159 75.5
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 8.9e-65 251.5 258 49.6
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.6e-58 230.7 170 64.1
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 1.2e-53 214.5 222 50.0
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 9.5e-43 178.3 279 36.2
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 1.3e-39 167.9 84 91.7
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 7.1e-38 162.2 118 61.9
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 1.1e-33 148.3 114 66.7
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 5.2e-33 146.0 99 71.7
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 5.4e-30 136.0 73 84.9
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 9.2e-30 135.2 133 51.9
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 7.3e-27 125.6 76 76.3
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.6e-26 124.4 68 82.4
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 5.3e-25 119.4 108 52.8
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 5.3e-25 119.4 108 52.8
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.4e-22 111.3 87 58.6
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.9e-22 110.9 174 40.2
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 5.1e-20 102.8 97 50.5
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.3e-19 100.1 85 55.3
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 7.3e-19 99.0 92 50.0
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 6.2e-18 95.9 58 77.6
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 5.3e-17 92.8 67 65.7
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.1e-13 80.9 89 49.4
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.5e-11 74.7 75 49.3
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 2.5e-11 73.9 47 72.3
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.6e-10 71.2 62 53.2
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 4.8e-10 69.7 51 60.8
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 6.4e-07 59.3 91 33.0


User provided reference genes

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