Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 2.6e-152 542.0 266 100.0
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 5.1e-148 527.7 266 96.6
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 8.7e-148 526.9 266 96.6
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 1.8e-113 412.9 272 73.9
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 1.4e-100 370.2 261 70.5
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 1.8e-100 369.8 216 78.2
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 5.2e-100 368.2 259 68.7
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 2.0e-99 366.3 215 78.1
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 3.7e-98 362.1 214 77.6
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 1.4e-97 360.1 249 67.5
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.6e-96 356.7 216 74.1
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 1.3e-95 353.6 252 66.3
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 1.7e-95 353.2 224 73.7
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 1.7e-95 353.2 230 73.5
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 3.9e-95 352.1 268 67.2
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 3.9e-95 352.1 259 65.3
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 8.6e-95 350.9 220 73.2
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 8.6e-95 350.9 248 69.4
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 1.9e-94 349.7 221 71.9
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 7.3e-94 347.8 232 68.5
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 7.3e-94 347.8 256 64.8
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 4.7e-93 345.1 213 75.1
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 4.7e-93 345.1 215 72.1
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 6.2e-93 344.7 266 63.5
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 4.0e-92 342.0 212 74.5
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 1.2e-91 340.5 215 70.7
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 3.4e-91 339.0 212 72.2
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 4.4e-91 338.6 213 70.9
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 4.4e-91 338.6 203 77.3
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 4.4e-91 338.6 215 70.2
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 5.8e-91 338.2 264 63.3
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.7e-90 336.7 216 70.8
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 2.9e-90 335.9 243 66.3
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 7.0e-89 331.3 215 67.4
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 1.2e-88 330.5 234 65.8
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 7.8e-88 327.8 215 71.2
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 1.0e-87 327.4 218 68.8
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 1.9e-86 323.2 190 77.4
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.8e-85 319.3 190 77.4
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 2.8e-85 319.3 247 61.5
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 4.7e-85 318.5 214 66.8
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 8.1e-85 317.8 220 66.4
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 1.1e-84 317.4 206 69.4
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.4e-84 317.0 209 71.3
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 1.8e-84 316.6 200 72.5
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 1.8e-84 316.6 213 69.0
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 5.2e-84 315.1 266 56.4
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 1.5e-83 313.5 224 65.2
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.0e-83 313.2 231 62.8
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 1.3e-82 310.5 236 60.6
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 1.7e-82 310.1 221 65.2
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 2.9e-82 309.3 178 80.9
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 2.4e-81 306.2 200 70.5
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 7.1e-81 304.7 211 64.9
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 2.1e-80 303.1 195 68.7
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 7.8e-80 301.2 207 65.7
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 7.8e-80 301.2 237 60.3
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 1.3e-79 300.4 208 64.9
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.3e-79 299.7 205 63.4
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 3.0e-79 299.3 220 61.4
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 3.0e-79 299.3 204 65.7
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 3.0e-79 299.3 236 59.3
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 3.9e-79 298.9 212 64.6
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 8.6e-79 297.7 204 63.7
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 1.5e-78 297.0 204 65.2
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 1.5e-78 297.0 200 65.0
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 3.3e-78 295.8 180 73.3
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 7.3e-78 294.7 220 60.9
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 9.5e-78 294.3 200 64.5
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 9.5e-78 294.3 204 63.7
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 9.5e-78 294.3 204 63.7
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 1.2e-77 293.9 219 62.1
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 3.6e-77 292.4 236 59.3
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 1.4e-76 290.4 204 63.7
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.1e-76 289.3 213 57.7
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 4.0e-76 288.9 222 64.0
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 6.8e-76 288.1 219 61.6
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 1.5e-75 287.0 237 58.2
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 1.5e-75 287.0 192 68.2
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 4.4e-75 285.4 206 62.6
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.7e-74 283.5 199 63.8
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 2.9e-74 282.7 192 66.7
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.9e-74 282.7 202 61.4
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 3.8e-74 282.3 207 61.8
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 1.9e-73 280.0 223 58.3
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 3.2e-73 279.3 199 62.8
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 7.1e-73 278.1 192 65.1
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 7.1e-73 278.1 192 64.1
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 7.1e-73 278.1 192 64.1
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 7.1e-73 278.1 200 62.0
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 9.2e-73 277.7 207 60.9
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 9.2e-73 277.7 213 58.2
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 1.2e-72 277.3 192 64.1
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.1e-72 276.6 192 65.6
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 2.7e-72 276.2 207 60.4
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.7e-72 276.2 199 62.8
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.3e-71 273.9 192 64.1
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 1.3e-71 273.9 188 64.9
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 3.9e-71 272.3 187 64.2
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 5.1e-71 271.9 199 61.8
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 6.6e-71 271.6 192 63.5
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 2.5e-70 269.6 219 56.6
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 9.6e-70 267.7 198 64.6
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 2.1e-69 266.5 187 64.2
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 3.6e-69 265.8 194 62.4
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 4.7e-69 265.4 192 58.9
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 1.8e-68 263.5 192 61.5
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 6.9e-68 261.5 200 60.0
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 2.6e-67 259.6 200 59.5
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 7.6e-67 258.1 197 59.4
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 2.2e-66 256.5 182 62.6
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 8.4e-66 254.6 182 63.2
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 2.4e-65 253.1 193 60.6
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 2.1e-64 250.0 193 56.0
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 2.1e-64 250.0 251 51.4
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 2.1e-64 250.0 193 56.0
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 2.1e-64 250.0 193 56.0
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.0e-63 247.7 173 63.6
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 2.3e-63 246.5 194 60.8
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 3.9e-63 245.7 193 55.4
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 3.9e-63 245.7 193 55.4
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 6.6e-63 245.0 232 53.4
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 7.3e-62 241.5 201 57.2
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 6.2e-61 238.4 200 56.5
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 6.9e-60 235.0 230 48.7
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 5.8e-59 231.9 178 57.9
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 2.2e-58 229.9 197 52.8
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 6.4e-58 228.4 152 73.7
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 8.4e-58 228.0 192 53.6
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 1.1e-57 227.6 144 73.6
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 2.4e-57 226.5 204 49.5
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 7.1e-57 224.9 207 51.2
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 3.5e-56 222.6 193 55.4
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 7.9e-56 221.5 151 68.9
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.0e-55 221.1 162 61.7
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 6.7e-55 218.4 177 60.5
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 1.3e-47 194.1 223 42.2
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 1.3e-42 177.6 112 72.3
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 3.2e-41 172.9 125 59.2
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 3.2e-41 172.9 203 44.8
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 9.7e-38 161.4 123 61.8
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 2.4e-36 156.8 180 46.7
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 1.5e-35 154.1 180 46.1
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 1.5e-35 154.1 180 46.1
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 2.9e-34 149.8 188 45.7
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 2.5e-33 146.7 204 41.2
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 5.5e-33 145.6 264 36.7
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 9.7e-30 134.8 87 66.7
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 2.4e-28 130.2 197 37.1
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.2e-27 127.9 86 66.3
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.0e-27 127.1 88 62.5
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 5.0e-26 122.5 206 36.9
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 7.9e-24 115.2 96 56.2
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.8e-23 114.0 83 55.4
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 3.9e-23 112.8 78 65.4
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 1.5e-22 110.9 75 68.0
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 3.3e-22 109.8 77 62.3
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 2.2e-21 107.1 115 49.6
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 3.7e-21 106.3 170 40.0
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 8.2e-21 105.1 74 66.2
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 8.2e-21 105.1 74 62.2
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 1.7e-18 97.4 150 38.0
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 2.7e-16 90.1 153 34.6
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 4.7e-16 89.4 148 35.1
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.7e-13 80.9 59 55.9
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 6.3e-13 79.0 44 79.5
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 2.1e-08 63.9 45 60.0


User provided reference genes

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