Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 0.0e+00 1437.9 726 100.0
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 0.0e+00 1278.8 726 88.8
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 0.0e+00 1258.4 726 89.7
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 0.0e+00 1258.0 729 87.9
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 0.0e+00 1251.5 730 86.3
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 0.0e+00 1141.7 729 79.3
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 0.0e+00 1138.6 734 78.7
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 0.0e+00 1135.2 729 78.7
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1134.0 730 78.6
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 0.0e+00 1130.2 729 78.2
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 0.0e+00 1128.2 736 78.3
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 0.0e+00 1127.1 721 79.9
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 0.0e+00 1114.8 735 77.1
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 0.0e+00 1104.4 735 76.6
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 0.0e+00 1098.2 729 77.0
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 0.0e+00 1098.2 723 77.0
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1095.1 721 77.0
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 0.0e+00 1092.8 730 76.2
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 0.0e+00 1092.0 703 79.8
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 0.0e+00 1091.3 723 76.8
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 0.0e+00 1086.2 730 76.0
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1083.6 727 74.8
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 0.0e+00 1083.6 726 77.0
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 0.0e+00 1082.4 730 76.0
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 0.0e+00 1081.2 724 76.8
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 0.0e+00 1078.2 730 75.8
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 0.0e+00 1077.4 726 74.8
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 0.0e+00 1075.5 730 76.2
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 9.9e-312 1073.2 730 75.5
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 9.9e-312 1073.2 729 75.4
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 2.5e-311 1071.6 702 77.8
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 6.0e-311 1070.5 721 75.5
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.7e-310 1068.9 730 76.2
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.7e-310 1068.9 698 77.9
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 2.9e-310 1068.1 731 75.8
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 2.4e-309 1065.1 744 75.0
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 5.4e-309 1063.9 722 75.5
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.2e-308 1062.8 730 75.5
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.6e-308 1062.4 730 74.7
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 2.7e-308 1061.6 730 74.4
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 3.5e-308 1061.2 730 75.5
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.0e-307 1059.7 707 76.1
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.1e-306 1056.2 682 79.5
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.1e-306 1056.2 730 74.8
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.5e-306 1055.8 757 72.7
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 2.1e-305 1052.0 730 74.4
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 3.6e-305 1051.2 731 73.7
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 5.3e-304 1047.3 701 75.5
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 4.4e-303 1044.3 787 70.1
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 7.6e-303 1043.5 755 71.8
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 3.8e-302 1041.2 744 72.8
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.9e-298 1028.9 700 73.9
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 2.8e-297 1025.0 807 67.4
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 3.6e-297 1024.6 728 70.7
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 2.0e-295 1018.8 709 73.8
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 7.6e-295 1016.9 724 72.0
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 7.6e-295 1016.9 734 70.0
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 7.6e-295 1016.9 710 74.6
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.3e-294 1016.1 730 72.6
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 2.2e-294 1015.4 719 73.4
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 1.4e-293 1012.7 703 72.3
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 2.7e-292 1008.4 722 71.1
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 6.7e-291 1003.8 728 69.5
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.1e-290 1003.0 723 72.2
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 2.5e-290 1001.9 710 71.5
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 4.3e-290 1001.1 728 69.6
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 4.8e-289 997.7 725 69.4
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.4e-288 996.1 709 73.5
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 2.6e-287 991.9 702 72.2
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 4.5e-287 991.1 706 70.7
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 5.8e-287 990.7 727 70.7
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 6.5e-286 987.3 702 71.7
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 2.1e-284 982.2 737 68.2
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 2.1e-284 982.2 736 68.6
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 2.1e-284 982.2 737 68.1
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.7e-284 981.9 724 68.6
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 4.6e-284 981.1 705 70.9
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 6.7e-283 977.2 737 67.8
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 8.7e-283 976.9 739 68.5
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.1e-282 976.5 714 70.6
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.1e-280 969.9 739 68.1
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 3.1e-280 968.4 654 76.1
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 6.9e-280 967.2 708 71.5
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 4.5e-279 964.5 705 69.9
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.9e-278 961.8 719 70.8
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 3.8e-278 961.4 735 68.3
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.4e-277 959.5 682 71.3
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 4.2e-277 958.0 741 67.2
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 7.1e-277 957.2 702 68.9
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 3.5e-276 954.9 666 74.9
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 4.6e-276 954.5 738 68.0
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 4.6e-276 954.5 728 68.1
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 3.9e-275 951.4 736 66.7
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.5e-274 949.5 711 68.4
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 4.8e-273 944.5 732 66.5
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 6.5e-270 934.1 714 67.4
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 6.1e-268 927.5 724 65.9
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.0e-267 926.8 725 66.2
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.0e-267 926.8 728 65.0
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.4e-267 926.4 742 66.0
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.9e-267 924.9 730 64.4
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.4e-264 916.4 697 67.3
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 7.7e-263 910.6 718 65.7
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 6.5e-262 907.5 675 69.5
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 9.4e-261 903.7 714 65.7
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.2e-260 903.3 708 66.2
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 2.6e-258 895.6 727 65.5
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 7.4e-258 894.0 638 72.3
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.4e-256 889.0 730 63.2
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 7.0e-256 887.5 718 66.0
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 7.7e-255 884.0 723 65.3
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 5.0e-254 881.3 755 63.4
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.0e-250 869.4 712 63.6
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 4.4e-242 841.6 612 72.5
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.2e-239 833.6 707 62.4
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.3e-238 830.1 583 74.8
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 5.7e-234 814.7 730 60.5
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 2.5e-229 799.3 620 68.9
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.0e-226 789.6 732 57.5
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 9.8e-226 787.3 648 66.4
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.4e-216 756.9 713 58.6
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.9e-216 756.5 550 72.7
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.3e-213 745.3 570 69.3
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.6e-204 716.8 564 68.1
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.4e-202 709.1 574 66.6
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.6e-199 700.3 719 54.5
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 8.6e-198 694.5 655 56.6
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 7.8e-191 671.4 492 70.1
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 3.1e-187 659.4 695 53.1
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 2.8e-180 636.3 705 49.5
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.4e-155 554.3 633 52.3
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 5.9e-146 522.3 870 39.2
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.5e-144 516.9 343 74.9
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 7.5e-133 478.8 443 59.4
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.2e-114 418.3 261 79.3
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.8e-110 402.5 260 78.1
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 2.9e-100 370.5 368 54.6
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 2.0e-93 347.8 320 57.2
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.6e-82 311.6 496 39.5
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 2.1e-66 258.1 287 49.5
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 2.1e-63 248.1 548 35.6
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.5e-61 240.4 148 77.7
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 6.0e-50 203.4 185 58.4
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.7e-44 185.3 136 72.8
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 4.6e-42 177.2 321 37.1
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 1.3e-39 169.1 301 37.5
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 6.3e-39 166.8 122 69.7
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 8.2e-39 166.4 189 53.4
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 4.5e-37 160.6 125 62.4
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.9e-35 155.2 121 63.6
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 6.7e-33 146.7 321 36.8
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 5.7e-32 143.7 178 48.3
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 8.8e-25 119.8 77 71.4
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.8e-23 114.8 121 53.7
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-23 114.0 102 56.9
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-23 114.0 102 56.9
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 1.7e-20 105.5 88 63.6
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.9e-19 102.1 85 62.4
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 1.2e-13 82.8 54 75.9
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.6e-13 82.4 65 58.5
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.9e-12 78.2 51 74.5
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.5e-08 65.9 37 83.8
MCO01G401 Micromonas commoda HOM05D004359 ORTHO05D005052 1.4e-06 59.3 289 26.3
Medtr4g025780 Medicago truncatula HOM05D024396 ORTHO05D005052 5.4e-06 57.4 53 60.4
Medtr4g054245 Medicago truncatula HOM05D024396 ORTHO05D005052 5.4e-06 57.4 53 60.4


User provided reference genes

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