Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.0e-51 206.5 106 100.0
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 9.1e-48 193.4 106 94.3
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 4.7e-36 154.5 107 78.5
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.9e-30 134.8 105 73.3
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.8e-27 125.9 106 69.8
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.5e-26 122.9 96 72.9
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.9e-24 115.9 113 62.8
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.5e-23 111.7 128 60.2
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 7.8e-23 110.5 128 59.4
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.3e-22 109.8 95 62.1
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.3e-22 109.0 125 60.0
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.1e-21 106.7 104 64.4
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.1e-21 106.7 125 59.2
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.1e-21 106.7 94 64.9
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.5e-21 106.3 128 56.2
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 2.5e-21 105.5 94 64.9
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 5.6e-21 104.4 104 63.5
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.2e-20 103.2 94 66.0
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 3.6e-20 101.7 98 64.3
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 4.7e-20 101.3 104 62.5
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 6.2e-20 100.9 106 61.3
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 6.2e-20 100.9 109 61.5
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.1e-19 100.1 115 59.1
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.1e-19 100.1 111 55.0
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.1e-19 100.1 105 59.0
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.8e-19 99.4 98 61.2
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.3e-19 99.0 111 57.7
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 4.0e-19 98.2 111 61.3
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 6.8e-19 97.4 99 60.6
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 6.8e-19 97.4 111 53.2
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 6.8e-19 97.4 111 53.2
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 8.9e-19 97.1 106 55.7
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-18 96.3 105 61.0
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.5e-18 96.3 105 61.0
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.5e-18 96.3 110 59.1
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.6e-18 95.5 112 58.0
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.6e-18 95.5 108 57.4
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.4e-18 95.1 102 57.8
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 4.4e-18 94.7 108 57.4
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 5.8e-18 94.4 113 54.9
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.5e-18 94.0 102 56.9
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 9.8e-18 93.6 107 57.9
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.3e-17 93.2 97 56.7
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-17 93.2 102 58.8
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.3e-17 93.2 103 57.3
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.3e-17 93.2 104 55.8
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 2.2e-17 92.4 105 57.1
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.2e-17 92.4 100 56.0
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 3.7e-17 91.7 93 64.5
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 3.7e-17 91.7 105 57.1
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 6.4e-17 90.9 99 57.6
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 8.3e-17 90.5 104 57.7
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 8.3e-17 90.5 110 57.3
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 8.3e-17 90.5 97 57.7
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-16 90.1 103 54.4
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 1.1e-16 90.1 91 63.7
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-16 89.7 100 61.0
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.4e-16 89.7 92 58.7
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.9e-16 89.4 93 60.2
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.4e-16 89.0 103 53.4
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.2e-16 88.6 89 57.3
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 3.2e-16 88.6 111 52.3
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 3.2e-16 88.6 102 56.9
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 4.1e-16 88.2 101 52.5
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 5.4e-16 87.8 103 50.5
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 5.4e-16 87.8 101 55.4
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 5.4e-16 87.8 101 56.4
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 7.1e-16 87.4 118 51.7
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 7.1e-16 87.4 92 56.5
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 9.2e-16 87.0 105 52.4
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-15 86.7 99 56.6
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.2e-15 86.7 94 59.6
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 1.2e-15 86.7 110 56.4
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.2e-15 86.7 96 55.2
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.2e-15 86.7 98 52.0
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.6e-15 86.3 101 54.5
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.6e-15 86.3 94 58.5
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.1e-15 85.9 100 51.0
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.7e-15 85.5 100 56.0
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 3.5e-15 85.1 104 53.8
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 4.6e-15 84.7 101 50.5
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 4.6e-15 84.7 101 50.5
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 4.6e-15 84.7 107 53.3
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 4.6e-15 84.7 103 48.5
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.6e-15 84.7 103 50.5
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 4.6e-15 84.7 102 50.0
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 6.0e-15 84.3 106 50.0
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 6.0e-15 84.3 97 55.7
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 6.0e-15 84.3 103 55.3
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 7.8e-15 84.0 101 53.5
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 7.8e-15 84.0 107 57.0
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.8e-15 84.0 101 54.5
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.0e-14 83.6 99 52.5
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.0e-14 83.6 108 54.6
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.0e-14 83.6 102 54.9
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.3e-14 83.2 99 52.5
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.7e-14 82.8 105 49.5
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.7e-14 82.8 99 54.5
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.7e-14 82.8 99 54.5
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 2.3e-14 82.4 112 55.4
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 2.3e-14 82.4 101 51.5
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 2.3e-14 82.4 101 54.5
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 3.0e-14 82.0 88 55.7
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 3.0e-14 82.0 91 52.7
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 3.0e-14 82.0 110 50.9
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 3.9e-14 81.6 99 54.5
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 5.1e-14 81.3 94 58.5
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.1e-14 81.3 96 54.2
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 5.1e-14 81.3 102 51.0
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.1e-14 81.3 96 51.0
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 6.6e-14 80.9 99 53.5
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 6.6e-14 80.9 92 53.3
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.6e-14 80.9 94 53.2
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 8.6e-14 80.5 99 52.5
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 8.6e-14 80.5 99 51.5
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 8.6e-14 80.5 99 51.5
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 8.6e-14 80.5 107 51.4
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 8.6e-14 80.5 102 49.0
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.1e-13 80.1 99 49.5
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-13 79.7 105 47.6
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-13 79.7 99 51.5
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.9e-13 79.3 105 47.6
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.9e-13 79.3 105 47.6
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.9e-13 79.3 105 47.6
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 1.9e-13 79.3 99 51.5
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.9e-13 79.3 105 47.6
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.5e-13 79.0 123 45.5
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 3.3e-13 78.6 94 55.3
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 5.6e-13 77.8 106 50.9
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 7.3e-13 77.4 89 52.8
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 7.3e-13 77.4 128 44.5
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 7.3e-13 77.4 128 44.5
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 7.3e-13 77.4 105 51.4
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 9.5e-13 77.0 106 51.9
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 1.6e-12 76.3 94 48.9
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.1e-12 75.9 99 54.5
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.1e-12 75.9 99 50.5
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.8e-12 75.5 103 50.5
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 2.8e-12 75.5 89 52.8
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.6e-12 75.1 96 50.0
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.7e-12 74.7 104 51.0
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 6.2e-12 74.3 97 48.5
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 6.2e-12 74.3 109 48.6
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.2e-12 74.3 98 50.0
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.1e-11 73.6 103 46.6
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.4e-11 73.2 102 52.0
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.4e-11 73.2 91 53.8
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.4e-11 73.2 97 49.5
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 1.8e-11 72.8 99 47.5
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 2.3e-11 72.4 115 46.1
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 3.1e-11 72.0 94 47.9
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 4.0e-11 71.6 101 47.5
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 5.2e-11 71.2 105 44.8
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 5.2e-11 71.2 95 53.7
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-10 70.1 91 47.3
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-10 70.1 91 47.3
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 1.2e-10 70.1 128 44.5
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 1.2e-10 70.1 102 49.0
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 1.5e-10 69.7 97 47.4
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 3.4e-10 68.6 104 44.2
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 7.6e-10 67.4 90 50.0
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.6e-10 67.4 104 47.1
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.7e-09 66.2 103 43.7
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.7e-09 66.2 104 47.1
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 2.9e-09 65.5 80 47.5
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 1.4e-08 63.2 111 43.2
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.9e-08 62.8 86 43.0
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 2.4e-08 62.4 111 40.5
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 2.4e-08 62.4 104 43.3
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 4.1e-08 61.6 101 46.5
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 1.2e-07 60.1 106 43.4
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.7e-07 58.9 126 41.3
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.3e-06 56.6 93 43.0
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 6.6e-06 54.3 103 39.8


User provided reference genes

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