Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008253 Carpinus fangiana HOM05D031431 ORTHO05D028633 2.6e-52 208.4 100 100.0
Cfa011621 Carpinus fangiana HOM05D031431 ORTHO05D028633 9.2e-50 199.9 101 96.0
Haze_24222 Corylus avellana HOM05D031431 ORTHO05D028633 8.1e-30 133.7 80 86.2
TWI79G1112 Tripterygium wilfordii HOM05D031431 ORTHO05D028633 5.6e-15 84.3 104 43.3
Glyma.12G058200 Glycine max HOM05D000136 ORTHO05D000080 1.8e-08 62.8 74 39.2
VMungo1127G2004 Vigna mungo HOM05D000136 ORTHO05D000080 3.0e-08 62.0 76 40.8
vmacro14571 Vaccinium macrocarpon HOM05D000136 ORTHO05D000080 8.7e-08 60.5 100 33.0
FAN16G1084 Fragaria x ananassa HOM05D000136 ORTHO05D000080 3.3e-07 58.5 78 39.7
Phvul.011G060200 Phaseolus vulgaris HOM05D000136 ORTHO05D000080 3.3e-07 58.5 76 39.5
CANSAT54G2348 Cannabis sativa HOM05D000136 ORTHO05D000080 9.6e-07 57.0 66 43.9
Glyma.11G134200 Glycine max HOM05D000136 ORTHO05D000080 9.6e-07 57.0 63 42.9
Prupe.6G008800 Prunus persica HOM05D000136 ORTHO05D000080 9.6e-07 57.0 74 40.5
Gohir.D08G012500 Gossypium hirsutum HOM05D000136 ORTHO05D000080 1.3e-06 56.6 93 35.5
RcHm_v2.0_Chr5g0067101 Rosa chinensis HOM05D000136 ORTHO05D000080 1.3e-06 56.6 74 40.5
CiPaw.13G086200 Carya illinoinensis HOM05D000136 ORTHO05D000080 1.6e-06 56.2 79 39.2
Hma1.2p1_0039F.1_g024970 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 1.6e-06 56.2 107 32.7
Glyma.07G200000 Glycine max HOM05D000136 ORTHO05D000080 2.8e-06 55.5 93 36.6
MD03G1081800 Malus domestica HOM05D000136 ORTHO05D000080 2.8e-06 55.5 75 41.3
Nn5g28904 Nelumbo nucifera HOM05D000136 ORTHO05D000080 2.8e-06 55.5 93 30.1
Rhsim03G0138500 Rhododendron simsii HOM05D000136 ORTHO05D000080 2.8e-06 55.5 109 30.3
Nitab4.5_0000278g0040 Nicotiana tabacum HOM05D000136 ORTHO05D000080 3.7e-06 55.1 99 34.3
Thecc.09G310700 Theobroma cacao HOM05D000136 ORTHO05D000080 3.7e-06 55.1 108 32.4
arahy.Tifrunner.gnm1.ann1.AV7YP7 Arachis hypogaea HOM05D000136 ORTHO05D000080 4.8e-06 54.7 61 44.3
EL10Ac4g08752 Beta vulgaris HOM05D000881 ORTHO05D000666 4.8e-06 54.7 85 32.9
COL.COLO4_19060 Corchorus olitorius HOM05D000136 ORTHO05D000080 4.8e-06 54.7 93 34.4
COL.COLO4_19064 Corchorus olitorius HOM05D000136 ORTHO05D000080 4.8e-06 54.7 93 34.4
FvH4_3g37320 Fragaria vesca HOM05D000136 ORTHO05D000080 4.8e-06 54.7 78 37.2
Gohir.D03G131300 Gossypium hirsutum HOM05D000136 ORTHO05D000080 4.8e-06 54.7 93 36.6
Gohir.D12G139500 Gossypium hirsutum HOM05D000136 ORTHO05D000080 4.8e-06 54.7 95 34.7
Gorai.003G138100 Gossypium raimondii HOM05D000136 ORTHO05D000080 4.8e-06 54.7 93 36.6
Gorai.008G150600 Gossypium raimondii HOM05D000136 ORTHO05D000080 4.8e-06 54.7 95 34.7
QL11p043528 Quercus lobata HOM05D000136 ORTHO05D000080 4.8e-06 54.7 93 33.3
QL11p043537 Quercus lobata HOM05D000136 ORTHO05D000080 4.8e-06 54.7 93 33.3
QL11p043544 Quercus lobata HOM05D000136 ORTHO05D000080 4.8e-06 54.7 93 33.3
QL11p043631 Quercus lobata HOM05D000136 ORTHO05D000080 4.8e-06 54.7 93 33.3
QL11p043638 Quercus lobata HOM05D000136 ORTHO05D000080 4.8e-06 54.7 93 33.3
Cfa011618 Carpinus fangiana HOM05D000136 ORTHO05D000080 6.2e-06 54.3 74 39.2
Glyma.13G176000 Glycine max HOM05D000136 ORTHO05D000080 6.2e-06 54.3 107 33.6
Hma1.2p1_0204F.1_g086850 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 6.2e-06 54.3 93 34.4
Medtr4g064993 Medicago truncatula HOM05D000136 ORTHO05D000080 6.2e-06 54.3 77 36.4
QL11p043551 Quercus lobata HOM05D000136 ORTHO05D000080 6.2e-06 54.3 93 33.3
COL.COLO4_19057 Corchorus olitorius HOM05D000136 ORTHO05D000080 8.2e-06 53.9 107 31.8
QL01p028605 Quercus lobata HOM05D000136 ORTHO05D000080 8.2e-06 53.9 93 34.4
Rhsim01G0233700 Rhododendron simsii HOM05D000136 ORTHO05D000080 8.2e-06 53.9 115 33.9
vmacro14568 Vaccinium macrocarpon HOM05D000136 ORTHO05D000080 8.2e-06 53.9 107 32.7


User provided reference genes

Program Settings