Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008236 Carpinus fangiana HOM05D007548 ORTHO05D009527 3.2e-160 568.5 324 100.0
Haze_13820 Corylus avellana HOM05D007548 ORTHO05D009527 1.5e-149 533.1 327 89.9
CiPaw.03G097400 Carya illinoinensis HOM05D007548 ORTHO05D009527 6.1e-87 325.1 319 63.3
Prupe.2G283000 Prunus persica HOM05D007548 ORTHO05D009527 3.6e-71 272.7 319 59.2
Thecc.03G162900 Theobroma cacao HOM05D007548 ORTHO05D009527 4.4e-69 265.8 325 57.2
Duzib068G0425 Durio zibethinus HOM05D007548 ORTHO05D009527 4.9e-68 262.3 319 53.9
Potri.015G132000 Populus trichocarpa HOM05D007548 ORTHO05D009527 7.3e-64 248.4 311 54.3
FvH4_7g28270 Fragaria vesca HOM05D007548 ORTHO05D009527 2.1e-63 246.9 308 57.1
FAN06G3028 Fragaria x ananassa HOM05D007548 ORTHO05D009527 2.1e-63 246.9 308 57.1
FAN06G3476 Fragaria x ananassa HOM05D007548 ORTHO05D009527 2.1e-63 246.9 308 57.1
FAN03G1824 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.4e-62 244.2 310 53.2
Atru.chr1.619 Acer truncatum HOM05D007548 ORTHO05D009527 4.2e-59 232.6 293 54.6
FAN01G2764 Fragaria x ananassa HOM05D007548 ORTHO05D009527 3.5e-58 229.6 309 53.1
Manes.06G138600 Manihot esculenta HOM05D007548 ORTHO05D009527 6.0e-58 228.8 316 51.6
TWI39G0023 Tripterygium wilfordii HOM05D007548 ORTHO05D009527 3.9e-57 226.1 328 50.6
Ciclev10007148m.g Citrus clementina HOM05D007548 ORTHO05D009527 7.6e-53 211.8 262 55.7
FAN03G2953 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.3e-52 211.1 276 52.9
RcHm_v2.0_Chr1g0375221 Rosa chinensis HOM05D007548 ORTHO05D009527 8.4e-52 208.4 273 54.9
TAR636G2044 Trochodendron aralioides HOM05D007548 ORTHO05D009527 1.1e-51 208.0 312 49.4
Gorai.008G283300 Gossypium raimondii HOM05D007548 ORTHO05D009527 1.1e-48 198.0 296 47.6
Gohir.D12G264100 Gossypium hirsutum HOM05D007548 ORTHO05D009527 1.5e-48 197.6 303 46.2
Gohir.A12G263800 Gossypium hirsutum HOM05D007548 ORTHO05D009527 5.6e-48 195.7 321 45.8
Glyma.20G151700 Glycine max HOM05D007548 ORTHO05D009527 2.8e-47 193.4 314 51.3
CANSAT80G1542 Cannabis sativa HOM05D007548 ORTHO05D009527 2.6e-45 186.8 291 49.5
Glyma.10G242400 Glycine max HOM05D007548 ORTHO05D009527 1.7e-44 184.1 308 46.8
Medtr1g102510 Medicago truncatula HOM05D007548 ORTHO05D009527 3.8e-44 183.0 301 40.9
Eucgr.K00142 Eucalyptus grandis HOM05D007548 ORTHO05D009527 1.1e-43 181.4 293 46.4
COL.COLO4_14190 Corchorus olitorius HOM05D007548 ORTHO05D009527 1.2e-42 177.9 221 52.9
Manes.14G032600 Manihot esculenta HOM05D007548 ORTHO05D009527 4.6e-42 176.0 283 45.2
Rhsim03G0172300 Rhododendron simsii HOM05D007548 ORTHO05D009527 4.6e-42 176.0 321 48.3
Lj5g0018367 Lotus japonicus HOM05D007548 ORTHO05D009527 7.9e-42 175.3 315 46.0
Cpa.g.sc13.212 Carica papaya HOM05D007548 ORTHO05D009527 1.5e-40 171.0 321 47.7
DCAR_018129 Daucus carota HOM05D007548 ORTHO05D009527 7.4e-40 168.7 328 42.7
Oeu021734.1 Olea europaea HOM05D007548 ORTHO05D009527 9.6e-40 168.3 317 47.0
Peaxi162Scf00192g00096 Petunia axillaris HOM05D007548 ORTHO05D009527 1.3e-39 167.9 289 45.7
Psat6g202320 Pisum sativum HOM05D007548 ORTHO05D009527 1.6e-39 167.5 303 44.9
Oeu021733.1 Olea europaea HOM05D007548 ORTHO05D009527 8.1e-39 165.2 317 46.7
Phvul.007G063100 Phaseolus vulgaris HOM05D007548 ORTHO05D009527 4.0e-38 162.9 308 42.5
Actinidia13550 Actinidia chinensis HOM05D007548 ORTHO05D009527 5.8e-37 159.1 311 42.8
Cc02_g03840 Coffea canephora HOM05D007548 ORTHO05D009527 2.2e-36 157.1 298 44.6
Actinidia25043 Actinidia chinensis HOM05D007548 ORTHO05D009527 4.9e-36 156.0 311 42.1
THA.LOC104798720 Tarenaya hassleriana HOM05D007548 ORTHO05D009527 1.1e-35 154.8 339 43.1
Lj8A35G80 Lonicera japonica HOM05D007548 ORTHO05D009527 1.4e-35 154.5 290 51.7
Aa31LG3G8110 Aethionema arabicum HOM05D007548 ORTHO05D009527 3.2e-35 153.3 358 36.3
Nitab4.5_0008495g0030 Nicotiana tabacum HOM05D007548 ORTHO05D009527 4.2e-35 152.9 327 42.5
MSTRG.27166 Avicennia marina HOM05D007548 ORTHO05D009527 1.2e-34 151.4 341 41.1
SalBow4G1498 Salvia bowleyana HOM05D007548 ORTHO05D009527 3.5e-34 149.8 315 40.3
Nitab4.5_0000072g0300 Nicotiana tabacum HOM05D007548 ORTHO05D009527 5.1e-33 146.0 329 41.3
arahy.Tifrunner.gnm1.ann1.J4U887 Arachis hypogaea HOM05D001870 ORTHO05D001797 6.7e-33 145.6 305 42.6
AL8G25930 Arabidopsis lyrata HOM05D007548 ORTHO05D009527 1.5e-32 144.4 357 43.7
arahy.Tifrunner.gnm1.ann1.WA56KQ Arachis hypogaea HOM05D001870 ORTHO05D001797 2.5e-32 143.7 305 42.0
Carub.0008s1170 Capsella rubella HOM05D007548 ORTHO05D009527 5.7e-32 142.5 345 44.1
PGR142G1046 Punica granatum HOM05D007548 ORTHO05D009527 9.6e-32 141.7 300 39.7
Lalb_Chr21g0304861 Lupinus albus HOM05D007548 ORTHO05D009527 2.1e-31 140.6 297 41.1
AT5G51680 Arabidopsis thaliana HOM05D007548 ORTHO05D009527 3.7e-31 139.8 354 44.9
Nn1g01184 Nelumbo nucifera HOM05D007548 ORTHO05D009527 1.1e-30 138.3 285 41.4
VMungo0720G2396 Vigna mungo HOM05D007548 ORTHO05D009527 1.1e-30 138.3 264 44.3
Migut.F00422 Erythranthe guttata HOM05D007548 ORTHO05D009527 1.4e-30 137.9 304 41.8
GSVIVG01018495001 Vitis vinifera HOM05D007548 ORTHO05D009527 1.3e-28 131.3 169 50.9
CARHR264530 Cardamine hirsuta HOM05D007548 ORTHO05D009527 2.2e-28 130.6 343 39.4
Nn4g26440 Nelumbo nucifera HOM05D007548 ORTHO05D009527 5.0e-28 129.4 343 31.8
EL10Ac3g05788 Beta vulgaris HOM05D007548 ORTHO05D009527 1.4e-27 127.9 302 39.7
Thhalv10014011m.g Eutrema salsugineum HOM05D007548 ORTHO05D009527 1.9e-27 127.5 345 42.9
Dinv07997 Davidia involucrata HOM05D007548 ORTHO05D009527 5.5e-27 125.9 233 42.5
SalBow4G2379 Salvia bowleyana HOM05D007548 ORTHO05D009527 1.6e-26 124.4 287 43.9
Sopen03g003070 Solanum pennellii HOM05D007548 ORTHO05D009527 6.1e-26 122.5 316 40.2
TPR.G26079 Trifolium pratense HOM05D007548 ORTHO05D009527 7.9e-26 122.1 301 37.5
AUR62035044 Chenopodium quinoa HOM05D007548 ORTHO05D009527 2.5e-24 117.1 300 36.7
AUR62016096 Chenopodium quinoa HOM05D007548 ORTHO05D009527 9.7e-24 115.2 299 36.1
Ah.07g208330 Amaranthus hybridus HOM05D007548 ORTHO05D009527 1.6e-23 114.4 302 35.4
SGA_v2.0_scaffold2G01130 Striga asiatica HOM05D007548 ORTHO05D009527 1.1e-22 111.7 290 37.2
PGSC0003DMG400031012 Solanum tuberosum HOM05D007548 ORTHO05D009527 1.2e-21 108.2 324 38.0
Sp6g13900 Schrenkiella parvula HOM05D007548 ORTHO05D009527 3.4e-21 106.7 402 36.8
Solyc03g007080.4 Solanum lycopersicum HOM05D007548 ORTHO05D009527 2.9e-20 103.6 186 44.6
BcaB08g35518 Brassica carinata HOM05D007548 ORTHO05D009527 5.0e-20 102.8 360 41.1
PSO782G0883 Papaver somniferum HOM05D007548 ORTHO05D009527 1.4e-19 101.3 310 30.0
PSO478G0091 Papaver somniferum HOM05D007548 ORTHO05D009527 2.5e-19 100.5 265 36.6
A10p09560 Brassica napus HOM05D007548 ORTHO05D009527 5.5e-19 99.4 346 40.5
Aqoxy7G00579 Aquilegia oxysepala HOM05D007548 ORTHO05D009527 1.6e-18 97.8 370 29.2
Lsat_1_v5_gn_8_8041 Lactuca sativa HOM05D007548 ORTHO05D009527 6.1e-18 95.9 285 37.2
BcaC04g20644 Brassica carinata HOM05D007548 ORTHO05D009527 1.4e-17 94.7 351 35.3
C09p41110 Brassica napus HOM05D007548 ORTHO05D009527 1.4e-17 94.7 351 35.3
BolC9t56989H Brassica oleracea HOM05D007548 ORTHO05D009527 1.4e-17 94.7 351 35.3
BraA10t43031Z Brassica rapa HOM05D007548 ORTHO05D009527 1.4e-17 94.7 347 39.5
FAN10G1395 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.4e-17 94.7 196 44.4
HanXRQChr05g0141371 Helianthus annuus HOM05D007548 ORTHO05D009527 3.0e-17 93.6 274 36.1
arahy.Tifrunner.gnm1.ann1.1QTB59 Arachis hypogaea HOM05D007548 ORTHO05D009527 7.4e-16 89.0 225 37.3
Sc25g0000160 Simmondsia chinensis HOM05D007548 ORTHO05D009527 1.3e-15 88.2 332 33.4
arahy.Tifrunner.gnm1.ann1.Z61DE3 Arachis hypogaea HOM05D007548 ORTHO05D009527 5.3e-14 82.8 226 35.0
unitig_37.g12505 Utricularia gibba HOM05D007548 ORTHO05D009527 7.7e-13 79.0 261 39.5
SGA_v2.0_scaffold486G52377 Striga asiatica HOM05D007548 ORTHO05D009527 1.7e-12 77.8 300 34.0
Ah.13g067520 Amaranthus hybridus HOM05D007548 ORTHO05D009527 1.3e-07 61.6 297 30.6
A02p12160 Brassica napus HOM05D007548 ORTHO05D009527 1.4e-06 58.2 381 26.8
MBI17_g42494_MAGBIO Magnolia biondii HOM05D007548 ORTHO05D009527 2.4e-06 57.4 153 48.4
BcaC03g14581 Brassica carinata HOM05D007548 ORTHO05D009527 3.1e-06 57.0 54 51.9
BolC2t08158H Brassica oleracea HOM05D007548 ORTHO05D009527 5.3e-06 56.2 367 33.5


User provided reference genes

Program Settings