Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 2.3e-278 962.2 760 100.0
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 6.7e-177 625.2 873 56.5
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 3.2e-102 377.1 373 58.4
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 6.7e-92 342.8 791 41.5
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 3.6e-77 293.9 373 49.9
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 7.4e-75 286.2 386 46.1
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 4.8e-74 283.5 230 64.3
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 2.0e-72 278.1 393 48.1
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.2e-69 268.9 342 48.5
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.6e-69 268.5 364 47.0
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 1.6e-69 268.5 364 47.0
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 2.7e-69 267.7 358 47.5
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 4.7e-69 266.9 369 46.9
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 1.4e-68 265.4 347 50.7
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 2.6e-67 261.2 372 46.0
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 4.8e-66 256.9 254 55.5
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 1.1e-65 255.8 373 45.3
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 1.6e-64 251.9 359 44.3
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 1.0e-63 249.2 378 42.6
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.5e-62 245.4 804 35.8
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 4.0e-60 237.3 353 45.0
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 3.7e-58 230.7 357 44.0
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 6.3e-58 229.9 380 43.7
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 8.2e-58 229.6 346 44.5
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 4.1e-57 227.3 181 63.5
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 4.1e-57 227.3 367 40.9
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 5.3e-57 226.9 362 43.1
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 7.0e-57 226.5 357 42.3
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 1.7e-55 221.9 362 41.2
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 1.2e-53 215.7 356 41.3
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.7e-53 214.5 354 39.3
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 8.0e-53 213.0 339 40.7
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 1.8e-52 211.8 243 49.0
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 6.8e-52 209.9 321 42.4
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.2e-51 209.1 283 44.5
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 4.8e-50 203.8 251 48.2
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 6.3e-50 203.4 349 39.5
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 5.4e-49 200.3 374 39.3
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 2.7e-48 198.0 373 38.3
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 4.5e-48 197.2 220 52.7
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.0e-47 196.1 346 40.5
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 1.7e-47 195.3 376 36.4
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.8e-47 194.1 346 40.2
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 5.0e-47 193.7 195 53.8
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 8.6e-47 193.0 252 46.8
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.1e-46 192.6 215 51.6
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 1.1e-46 192.6 375 35.7
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.9e-46 191.8 350 39.1
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.5e-46 191.4 347 39.5
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 2.5e-46 191.4 364 36.0
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 4.2e-46 190.7 380 36.6
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 4.7e-45 187.2 370 37.0
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 3.0e-44 184.5 210 49.0
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 8.9e-44 183.0 306 41.2
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 2.0e-43 181.8 328 38.7
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 5.7e-43 180.3 337 38.0
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 1.3e-42 179.1 362 36.5
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.7e-42 177.6 322 39.1
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 8.3e-42 176.4 366 36.3
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 1.1e-41 176.0 306 36.6
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 2.4e-41 174.9 328 38.4
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 9.2e-41 172.9 333 41.4
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 1.2e-40 172.6 327 38.5
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 5.9e-40 170.2 317 41.3
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 7.8e-40 169.9 322 38.5
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 6.6e-39 166.8 225 50.7
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.9e-38 165.2 282 39.4
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 1.2e-37 162.5 204 43.6
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 8.0e-37 159.8 258 39.9
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.4e-36 159.1 308 38.3
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.4e-36 159.1 302 39.4
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 8.9e-36 156.4 252 39.7
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.5e-35 155.6 353 36.0
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 7.5e-35 153.3 256 41.0
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 9.8e-35 152.9 370 34.6
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 1.3e-34 152.5 364 34.9
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 2.9e-34 151.4 225 42.2
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 4.9e-34 150.6 388 32.0
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 8.3e-34 149.8 217 46.1
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 3.2e-33 147.9 270 37.8
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 5.4e-33 147.1 183 48.1
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 1.2e-32 146.0 201 45.3
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 1.6e-32 145.6 283 37.5
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 3.5e-32 144.4 238 41.2
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 4.6e-32 144.1 235 42.1
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 1.1e-30 139.4 265 35.8
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 1.1e-30 139.4 180 43.9
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 1.1e-30 139.4 286 36.0
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 1.5e-30 139.0 292 38.0
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 1.9e-30 138.7 292 38.0
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 3.3e-30 137.9 287 36.2
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 4.3e-30 137.5 316 33.2
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 9.5e-30 136.3 223 39.9
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 2.1e-29 135.2 207 39.6
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 2.1e-29 135.2 216 41.7
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 8.0e-29 133.3 202 42.1
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 4.0e-28 131.0 247 37.2
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 8.9e-28 129.8 302 35.4
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 7.5e-27 126.7 211 42.2
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 2.2e-26 125.2 207 39.6
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 2.9e-26 124.8 285 36.5
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 3.7e-26 124.4 280 35.4
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 1.4e-25 122.5 237 38.4
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 1.9e-25 122.1 324 30.6
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 2.7e-24 118.2 317 33.4
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 2.7e-24 118.2 207 37.2
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 3.5e-24 117.9 179 41.3
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 4.6e-24 117.5 154 42.9
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 7.8e-24 116.7 328 30.2
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 1.3e-23 115.9 285 33.3
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 1.3e-23 115.9 357 31.1
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 7.3e-22 110.2 324 29.0
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 1.6e-21 109.0 179 41.9
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 3.6e-21 107.8 365 29.6
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 6.2e-21 107.1 205 37.1
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 4.0e-20 104.4 281 33.8
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 6.0e-16 90.5 295 36.6
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 3.0e-15 88.2 292 36.0
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 5.6e-14 84.0 154 41.6
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 3.6e-13 81.3 296 28.7
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 4.0e-12 77.8 118 40.7
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.2e-11 76.3 180 36.1
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.2e-08 66.2 160 31.9
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 4.6e-08 64.3 311 26.7
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 4.6e-08 64.3 119 40.3
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 6.0e-08 63.9 163 32.5
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.0e-07 63.2 103 40.8
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.3e-07 62.0 152 34.2
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 3.9e-07 61.2 104 35.6
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 5.1e-07 60.8 128 35.2
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 5.1e-07 60.8 119 37.8
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 6.6e-07 60.5 98 38.8
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.1e-06 59.7 128 36.7
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.1e-06 59.7 99 39.4
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.5e-06 59.3 102 39.2
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.9e-06 58.9 132 33.3
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 1.9e-06 58.9 111 37.8
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 2.5e-06 58.5 164 28.7
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.5e-06 58.5 105 38.1
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 2.5e-06 58.5 102 39.2
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 3.3e-06 58.2 105 40.0
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 3.3e-06 58.2 172 29.1
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 5.6e-06 57.4 112 39.3
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 5.6e-06 57.4 102 38.2
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 5.6e-06 57.4 115 37.4
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 7.3e-06 57.0 132 32.6
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 7.3e-06 57.0 102 38.2
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 7.3e-06 57.0 123 35.0
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 9.6e-06 56.6 138 35.5


User provided reference genes

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