Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008220 Carpinus fangiana HOM05D007220 ORTHO05D009058 3.1e-99 365.2 189 100.0
Haze_13838 Corylus avellana HOM05D007220 ORTHO05D009058 5.2e-94 347.8 189 94.7
CiPaw.04G061800 Carya illinoinensis HOM05D007220 ORTHO05D009058 4.3e-64 248.4 204 69.6
QL09p019051 Quercus lobata HOM05D007220 ORTHO05D009058 2.9e-60 235.7 204 66.2
ClCG05G007450 Citrullus lanatus HOM05D007220 ORTHO05D009058 7.5e-53 211.1 201 62.7
Manes.14G034000 Manihot esculenta HOM05D007220 ORTHO05D009058 7.5e-53 211.1 207 59.9
MELO3C006826.2 Cucumis melo HOM05D007220 ORTHO05D009058 4.9e-52 208.4 201 63.2
Dinv28549 Davidia involucrata HOM05D007220 ORTHO05D009058 1.2e-50 203.8 206 62.1
CsaV3_3G016270 Cucumis sativus L. HOM05D007220 ORTHO05D009058 2.7e-50 202.6 199 63.3
MD01G1184500 Malus domestica HOM05D007220 ORTHO05D009058 6.0e-50 201.4 189 60.8
Thecc.03G158900 Theobroma cacao HOM05D007220 ORTHO05D009058 6.6e-49 198.0 205 58.5
GSVIVG01018558001 Vitis vinifera HOM05D007220 ORTHO05D009058 1.2e-47 193.7 180 62.2
Duzib205G1715 Durio zibethinus HOM05D007220 ORTHO05D009058 1.2e-45 187.2 207 57.5
TWI39G1186 Tripterygium wilfordii HOM05D007220 ORTHO05D009058 2.0e-45 186.4 200 58.0
COL.COLO4_14153 Corchorus olitorius HOM05D007220 ORTHO05D009058 9.9e-45 184.1 201 55.2
Dinv22967 Davidia involucrata HOM05D007220 ORTHO05D009058 1.1e-43 180.6 210 53.3
THA.LOC104811513 Tarenaya hassleriana HOM05D007220 ORTHO05D009058 2.4e-43 179.5 197 56.3
Eucgr.A02878 Eucalyptus grandis HOM05D007220 ORTHO05D009058 3.2e-43 179.1 202 55.0
PGR042G1708 Punica granatum HOM05D007220 ORTHO05D009058 4.2e-43 178.7 201 55.7
Cpa.g.sc3.292 Carica papaya HOM05D007220 ORTHO05D009058 4.6e-42 175.3 206 54.4
FAN03G0488 Fragaria x ananassa HOM05D007220 ORTHO05D009058 4.6e-42 175.3 182 58.8
FAN03G2818 Fragaria x ananassa HOM05D007220 ORTHO05D009058 4.6e-42 175.3 182 58.8
BcaC01g06128 Brassica carinata HOM05D007220 ORTHO05D009058 7.8e-42 174.5 190 54.7
C03p18980 Brassica napus HOM05D007220 ORTHO05D009058 7.8e-42 174.5 190 54.7
BolC3t14287H Brassica oleracea HOM05D007220 ORTHO05D009058 7.8e-42 174.5 190 54.7
FvH4_7g27960 Fragaria vesca HOM05D007220 ORTHO05D009058 7.8e-42 174.5 181 59.1
BraA03t10902Z Brassica rapa HOM05D007220 ORTHO05D009058 1.3e-41 173.7 189 54.0
FAN06G4318 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.7e-41 173.3 181 58.6
Sabra15G0142900 Salix brachista HOM05D007220 ORTHO05D009058 1.7e-41 173.3 208 54.8
RcHm_v2.0_Chr1g0374911 Rosa chinensis HOM05D007220 ORTHO05D009058 3.9e-41 172.2 179 58.1
Cc02_g04040 Coffea canephora HOM05D007220 ORTHO05D009058 1.1e-40 170.6 208 53.8
FAN10G3220 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.9e-40 169.9 181 56.9
Sc19g0001910 Simmondsia chinensis HOM05D007220 ORTHO05D009058 4.3e-40 168.7 190 56.3
Glyma.09G232600 Glycine max HOM05D007220 ORTHO05D009058 7.3e-40 167.9 147 63.3
FAN01G2832 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.1e-39 166.4 181 56.4
Nn4g26358 Nelumbo nucifera HOM05D007220 ORTHO05D009058 2.1e-39 166.4 204 50.5
Potri.015G129600 Populus trichocarpa HOM05D007220 ORTHO05D009058 2.8e-39 166.0 207 54.6
BcaB01g04168 Brassica carinata HOM05D007220 ORTHO05D009058 6.2e-39 164.9 191 52.9
AL8G25850 Arabidopsis lyrata HOM05D007220 ORTHO05D009058 1.1e-38 164.1 199 51.3
vmacro09892 Vaccinium macrocarpon HOM05D007220 ORTHO05D009058 1.1e-38 164.1 200 53.5
Actinidia25024 Actinidia chinensis HOM05D007220 ORTHO05D009058 1.4e-38 163.7 203 54.7
MSTRG.27183 Avicennia marina HOM05D007220 ORTHO05D009058 1.4e-38 163.7 200 53.0
FAN06G0674 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.8e-38 163.3 182 55.5
Gohir.A07G038900 Gossypium hirsutum HOM05D007220 ORTHO05D009058 1.8e-38 163.3 189 52.4
AUR62016183 Chenopodium quinoa HOM05D007220 ORTHO05D009058 9.0e-38 161.0 203 53.7
Gohir.D07G043100 Gossypium hirsutum HOM05D007220 ORTHO05D009058 9.0e-38 161.0 189 51.9
Gorai.001G046100 Gossypium raimondii HOM05D007220 ORTHO05D009058 1.5e-37 160.2 189 51.9
Medtr4g035825 Medicago truncatula HOM05D007220 ORTHO05D009058 1.5e-37 160.2 194 50.0
Carub.0008s1158 Capsella rubella HOM05D007220 ORTHO05D009058 2.6e-37 159.5 195 49.7
Ciclev10005924m.g Citrus clementina HOM05D007220 ORTHO05D009058 2.6e-37 159.5 210 51.4
Sp6g13740 Schrenkiella parvula HOM05D007220 ORTHO05D009058 2.6e-37 159.5 193 50.3
Ca_30916_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 4.4e-37 158.7 194 50.5
Psat7g150000 Pisum sativum HOM05D007220 ORTHO05D009058 4.4e-37 158.7 197 50.3
AT5G51545 Arabidopsis thaliana HOM05D007220 ORTHO05D009058 1.3e-36 157.1 200 50.0
CSS0026352 Camellia sinensis var. sinensis HOM05D007220 ORTHO05D009058 1.3e-36 157.1 108 75.9
EL10Ac3g05813 Beta vulgaris HOM05D007220 ORTHO05D009058 1.7e-36 156.8 198 53.5
unitig_46.g18768 Utricularia gibba HOM05D007220 ORTHO05D009058 2.2e-36 156.4 183 52.5
Nitab4.5_0001548g0050 Nicotiana tabacum HOM05D007220 ORTHO05D009058 4.9e-36 155.2 194 54.6
Rhsim09G0192800 Rhododendron simsii HOM05D007220 ORTHO05D009058 6.4e-36 154.8 205 52.2
arahy.Tifrunner.gnm1.ann1.0IXC5E Arachis hypogaea HOM05D007220 ORTHO05D009058 1.9e-35 153.3 189 50.3
SGA_v2.0_scaffold486G52391 Striga asiatica HOM05D007220 ORTHO05D009058 5.4e-35 151.8 196 53.1
Atru.chr1.664 Acer truncatum HOM05D007220 ORTHO05D009058 7.1e-35 151.4 203 47.8
SalBow4G2286 Salvia bowleyana HOM05D007220 ORTHO05D009058 7.1e-35 151.4 198 53.5
VMungo1127G0384 Vigna mungo HOM05D007220 ORTHO05D009058 7.1e-35 151.4 194 51.5
SGA_v2.0_scaffold2G01175 Striga asiatica HOM05D007220 ORTHO05D009058 1.2e-34 150.6 202 49.5
A03p16110 Brassica napus HOM05D007220 ORTHO05D009058 1.6e-34 150.2 191 49.2
CAN.G152.17 Capsicum annuum HOM05D007220 ORTHO05D009058 2.7e-34 149.4 105 73.3
Peaxi162Scf00241g00624 Petunia axillaris HOM05D007220 ORTHO05D009058 2.7e-34 149.4 183 51.9
ECA233G2338 Erigeron canadensis HOM05D007220 ORTHO05D009058 4.6e-34 148.7 156 54.5
HanXRQChr08g0223851 Helianthus annuus HOM05D007220 ORTHO05D009058 1.0e-33 147.5 182 51.1
Sopen03g023380 Solanum pennellii HOM05D007220 ORTHO05D009058 1.3e-33 147.1 105 69.5
Lsat_1_v5_gn_8_9340 Lactuca sativa HOM05D007220 ORTHO05D009058 3.0e-33 146.0 184 51.6
Phvul.011G004500 Phaseolus vulgaris HOM05D007220 ORTHO05D009058 5.1e-33 145.2 201 48.8
Solyc03g083570.3 Solanum lycopersicum HOM05D007220 ORTHO05D009058 1.5e-32 143.7 186 50.0
Migut.F00451 Erythranthe guttata HOM05D007220 ORTHO05D009058 2.5e-32 142.9 97 73.2
Lj3g0016008 Lotus japonicus HOM05D007220 ORTHO05D009058 7.3e-32 141.4 148 54.7
Aqoxy7G00673 Aquilegia oxysepala HOM05D007220 ORTHO05D009058 1.3e-31 140.6 127 58.3
Nitab4.5_0000072g0560 Nicotiana tabacum HOM05D007220 ORTHO05D009058 1.3e-31 140.6 192 50.5
Aa31LG3G7960 Aethionema arabicum HOM05D007220 ORTHO05D009058 1.8e-30 136.7 189 48.1
CARHR264320 Cardamine hirsuta HOM05D007220 ORTHO05D009058 5.3e-30 135.2 194 43.8
CDE09G0763 Ceratophyllum demersum HOM05D007220 ORTHO05D009058 5.8e-29 131.7 166 49.4
Prupe.2G280700 Prunus persica HOM05D007220 ORTHO05D009058 5.8e-29 131.7 144 54.9
Lj8A39T34 Lonicera japonica HOM05D007220 ORTHO05D009058 7.6e-29 131.3 201 46.8
PSO782G3417 Papaver somniferum HOM05D007220 ORTHO05D009058 2.7e-26 122.9 115 52.2
arahy.Tifrunner.gnm1.ann1.83G6QR Arachis hypogaea HOM05D007220 ORTHO05D009058 1.0e-25 120.9 165 47.9
PSO478G4327 Papaver somniferum HOM05D007220 ORTHO05D009058 1.3e-25 120.6 115 50.4
Zm00001eb230760 Zea mays HOM05D007220 ORTHO05D009058 8.7e-25 117.9 145 48.3
PGSC0003DMG400023001 Solanum tuberosum HOM05D007220 ORTHO05D009058 2.8e-23 112.8 172 41.3
SEGI_29714 Sequoiadendron giganteum HOM05D007220 ORTHO05D009058 3.7e-23 112.5 150 47.3
AUR62035102 Chenopodium quinoa HOM05D007220 ORTHO05D009058 6.2e-23 111.7 199 44.2
HPP92_002073 Vanilla planifolia HOM05D007220 ORTHO05D009058 6.2e-23 111.7 189 39.7
Sed0003033 Sechium edule HOM05D007220 ORTHO05D009058 6.9e-22 108.2 159 53.5
ATR0730G016 Amborella trichopoda HOM05D007220 ORTHO05D009058 5.8e-21 105.1 113 54.9
Potri.012G128000 Populus trichocarpa HOM05D007220 ORTHO05D009058 2.9e-20 102.8 207 42.0
TPR.G15117 Trifolium pratense HOM05D007220 ORTHO05D009058 4.6e-18 95.5 199 37.7
Pp3c26_11240 Physcomitrium patens HOM05D007220 ORTHO05D009058 2.5e-16 89.7 119 47.9
TAR629G2293 Trochodendron aralioides HOM05D007220 ORTHO05D009058 2.5e-16 89.7 160 44.4
MD07G1256600 Malus domestica HOM05D007220 ORTHO05D009058 3.7e-15 85.9 53 71.7
DCAR_009422 Daucus carota HOM05D007220 ORTHO05D009058 8.2e-15 84.7 143 44.1
DCAR_009423 Daucus carota HOM05D007220 ORTHO05D009058 8.2e-15 84.7 143 44.1
AagrBONN_evm.TU.Sc2ySwM_228.5821 Anthoceros agrestis HOM05D007220 ORTHO05D009058 7.6e-13 78.2 130 40.8
Ca_20051_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 7.6e-13 78.2 146 41.1
Mapoly0002s0242 Marchantia polymorpha HOM05D007220 ORTHO05D009058 1.3e-12 77.4 69 50.7
HanXRQChr04g0107801 Helianthus annuus HOM05D000901 ORTHO05D001160 2.5e-11 73.2 166 38.0
MBI12_g20320_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 1.2e-10 70.9 185 34.1
Ah.07g208070 Amaranthus hybridus HOM05D000130 ORTHO05D009058 7.9e-10 68.2 152 42.8
MBI12_g14970_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 1.3e-09 67.4 58 62.1
MBI12_g25331_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 3.0e-09 66.2 61 59.0


User provided reference genes

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