Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008150 Carpinus fangiana HOM05D001867 ORTHO05D001708 2.2e-73 278.9 141 100.0
Cfa008149 Carpinus fangiana HOM05D001867 ORTHO05D001708 3.8e-25 118.6 113 62.8
CiPaw.03G020600 Carya illinoinensis HOM05D001867 ORTHO05D001708 9.4e-16 87.4 94 55.3
CiPaw.04G013500 Carya illinoinensis HOM05D001867 ORTHO05D001708 1.6e-15 86.7 112 47.3
Manes.14G036900 Manihot esculenta HOM05D001867 ORTHO05D001708 1.1e-13 80.5 107 49.5
MELO3C005960.2 Cucumis melo HOM05D001867 ORTHO05D001708 1.4e-11 73.6 136 35.3
CsaV3_3G007370 Cucumis sativus L. HOM05D001867 ORTHO05D001708 2.4e-11 72.8 136 35.3
Prupe.2G136700 Prunus persica HOM05D001867 ORTHO05D001708 3.1e-11 72.4 137 37.2
Nn1g00990 Nelumbo nucifera HOM05D001867 ORTHO05D001708 4.1e-11 72.0 133 39.8
Nn6g33954 Nelumbo nucifera HOM05D001867 ORTHO05D001708 4.1e-11 72.0 132 37.9
TAR629G0567 Trochodendron aralioides HOM05D001867 ORTHO05D001708 5.3e-11 71.6 139 36.7
Manes.06G133500 Manihot esculenta HOM05D001867 ORTHO05D001708 7.0e-11 71.2 127 39.4
Lj7P537T47 Lonicera japonica HOM05D001867 ORTHO05D001708 1.6e-10 70.1 109 41.3
Aqoxy7G00764 Aquilegia oxysepala HOM05D001867 ORTHO05D001708 2.0e-10 69.7 147 35.4
Glyma.01G079900 Glycine max HOM05D001867 ORTHO05D001708 2.0e-10 69.7 138 37.0
MBI04_g09504_MAGBIO Magnolia biondii HOM05D000174 ORTHO05D001526 2.0e-10 69.7 126 37.3
Actinidia12834 Actinidia chinensis HOM05D001867 ORTHO05D001708 3.5e-10 68.9 125 36.8
Glyma.09G230200 Glycine max HOM05D001867 ORTHO05D001708 3.5e-10 68.9 124 38.7
Cpa.g.sc2070.1 Carica papaya HOM05D001867 ORTHO05D001708 4.5e-10 68.6 101 44.6
MD07G1252200 Malus domestica HOM05D001867 ORTHO05D001708 4.5e-10 68.6 120 44.2
TAR374G0008 Trochodendron aralioides HOM05D001867 ORTHO05D001708 4.5e-10 68.6 115 41.7
Actinidia22766 Actinidia chinensis HOM05D000174 ORTHO05D001708 5.9e-10 68.2 123 38.2
ClCG05G000220 Citrullus lanatus HOM05D001867 ORTHO05D001708 5.9e-10 68.2 140 34.3
Manes.01G269300 Manihot esculenta HOM05D001867 ORTHO05D001708 1.0e-09 67.4 107 41.1
CSS0033702 Camellia sinensis var. sinensis HOM05D001867 ORTHO05D001708 1.3e-09 67.0 148 34.5
Duzib068G0792 Durio zibethinus HOM05D001867 ORTHO05D001708 1.7e-09 66.6 104 41.3
Prupe.2G275700 Prunus persica HOM05D001867 ORTHO05D001708 1.7e-09 66.6 84 50.0
Manes.05G049500 Manihot esculenta HOM05D001867 ORTHO05D001708 2.2e-09 66.2 107 41.1
Rhsim01G0135400 Rhododendron simsii HOM05D001867 ORTHO05D001708 2.2e-09 66.2 146 34.9
Thecc.01G384600 Theobroma cacao HOM05D001867 ORTHO05D001708 2.2e-09 66.2 108 41.7
AT3G60580 Arabidopsis thaliana HOM05D001867 ORTHO05D001708 2.9e-09 65.9 112 39.3
Dinv21642 Davidia involucrata HOM05D001867 ORTHO05D001708 2.9e-09 65.9 90 44.4
Duzib205G1684 Durio zibethinus HOM05D001867 ORTHO05D001708 2.9e-09 65.9 125 36.0
MD07G1114000 Malus domestica HOM05D001867 ORTHO05D001708 2.9e-09 65.9 147 36.1
CARHR170970 Cardamine hirsuta HOM05D001867 ORTHO05D001708 3.8e-09 65.5 111 42.3
MD01G1182000 Malus domestica HOM05D001867 ORTHO05D001708 3.8e-09 65.5 149 39.6
MSTRG.17158 Avicennia marina HOM05D001867 ORTHO05D001708 5.0e-09 65.1 106 42.5
CiPaw.14G025100 Carya illinoinensis HOM05D001867 ORTHO05D001708 5.0e-09 65.1 135 37.0
BcaB02g07404 Brassica carinata HOM05D001867 ORTHO05D001708 6.5e-09 64.7 136 36.0
Thhalv10006508m.g Eutrema salsugineum HOM05D001867 ORTHO05D001708 6.5e-09 64.7 113 41.6
Phvul.008G143900 Phaseolus vulgaris HOM05D001867 ORTHO05D001708 6.5e-09 64.7 105 41.0
VMungo1383G2168 Vigna mungo HOM05D001867 ORTHO05D001708 6.5e-09 64.7 105 41.0
MSTRG.20726 Avicennia marina HOM05D001867 ORTHO05D001708 8.5e-09 64.3 110 38.2
Potri.014G066100 Populus trichocarpa HOM05D001867 ORTHO05D001708 8.5e-09 64.3 110 41.8
Dinv44115 Davidia involucrata HOM05D001867 ORTHO05D001708 1.1e-08 63.9 110 39.1
Duzib133G0217 Durio zibethinus HOM05D001867 ORTHO05D001708 1.5e-08 63.5 109 40.4
CSS0026683 Camellia sinensis var. sinensis HOM05D001867 ORTHO05D001708 1.9e-08 63.2 116 37.1
CSS0047209 Camellia sinensis var. sinensis HOM05D001867 ORTHO05D001708 1.9e-08 63.2 116 37.1
Ciclev10020499m.g Citrus clementina HOM05D001867 ORTHO05D001708 1.9e-08 63.2 145 35.2
COL.COLO4_12481 Corchorus olitorius HOM05D001867 ORTHO05D001708 1.9e-08 63.2 111 36.9
Lj1g0010457 Lotus japonicus HOM05D001867 ORTHO05D001708 1.9e-08 63.2 139 33.8
Thecc.03G153500 Theobroma cacao HOM05D001867 ORTHO05D001708 1.9e-08 63.2 96 39.6
TAR375G0447 Trochodendron aralioides HOM05D001867 ORTHO05D001708 1.9e-08 63.2 123 35.8
AL5G42890 Arabidopsis lyrata HOM05D001867 ORTHO05D001708 2.5e-08 62.8 112 39.3
Migut.B01588 Erythranthe guttata HOM05D001867 ORTHO05D001708 2.5e-08 62.8 108 40.7
Sed0001361 Sechium edule HOM05D001867 ORTHO05D001708 2.5e-08 62.8 91 38.5
Actinidia02138 Actinidia chinensis HOM05D001867 ORTHO05D001708 3.2e-08 62.4 99 40.4
Duzib084G0545 Durio zibethinus HOM05D000174 ORTHO05D001708 3.2e-08 62.4 91 39.6
Cc02_g24700 Coffea canephora HOM05D001867 ORTHO05D001708 4.2e-08 62.0 168 31.5
Duzib068G0794 Durio zibethinus HOM05D001867 ORTHO05D001708 4.2e-08 62.0 131 34.4
vmacro13448 Vaccinium macrocarpon HOM05D001867 ORTHO05D001708 4.2e-08 62.0 156 34.6
Duzib138G0074 Durio zibethinus HOM05D001867 ORTHO05D001708 5.5e-08 61.6 108 38.9
unitig_747.g21187 Utricularia gibba HOM05D001658 ORTHO05D001406 5.5e-08 61.6 58 48.3
Carub.0005s2730 Capsella rubella HOM05D001867 ORTHO05D001708 7.2e-08 61.2 113 38.1
Lalb_Chr03g0039831 Lupinus albus HOM05D001867 ORTHO05D001708 7.2e-08 61.2 114 37.7
QL04p036037 Quercus lobata HOM05D001867 ORTHO05D001708 7.2e-08 61.2 106 38.7
Sp4g27180 Schrenkiella parvula HOM05D001867 ORTHO05D001708 7.2e-08 61.2 138 33.3
Atru.chr5.231 Acer truncatum HOM05D001867 ORTHO05D001708 9.4e-08 60.8 163 29.4
Duzib084G0597 Durio zibethinus HOM05D001867 ORTHO05D001708 9.4e-08 60.8 124 34.7
Gohir.D12G097800 Gossypium hirsutum HOM05D001867 ORTHO05D001708 9.4e-08 60.8 107 37.4
MD02G1214100 Malus domestica HOM05D001867 ORTHO05D001708 9.4e-08 60.8 115 39.1
Oeu005826.1 Olea europaea HOM05D001867 ORTHO05D001708 9.4e-08 60.8 148 33.8
vmacro21036 Vaccinium macrocarpon HOM05D001867 ORTHO05D001708 9.4e-08 60.8 142 34.5
PGR004G0910 Punica granatum HOM05D001867 ORTHO05D001708 1.2e-07 60.5 106 41.5
Rhsim07G0031800 Rhododendron simsii HOM05D001867 ORTHO05D001708 1.2e-07 60.5 142 36.6
DCAR_015875 Daucus carota HOM05D001867 ORTHO05D001708 1.6e-07 60.1 120 39.2
Gohir.A12G095200 Gossypium hirsutum HOM05D001867 ORTHO05D001708 2.1e-07 59.7 107 37.4
Gorai.001G175400 Gossypium raimondii HOM05D001867 ORTHO05D001708 2.1e-07 59.7 106 35.8
Sabra01G0096900 Salix brachista HOM05D001867 ORTHO05D001708 2.1e-07 59.7 92 40.2
COL.COLO4_37170 Corchorus olitorius HOM05D001867 ORTHO05D001708 2.7e-07 59.3 137 32.1
FAN06G3486 Fragaria x ananassa HOM05D001867 ORTHO05D001708 2.7e-07 59.3 150 32.0
Gohir.A07G147200 Gossypium hirsutum HOM05D001867 ORTHO05D001708 2.7e-07 59.3 105 36.2
Gorai.008G106500 Gossypium raimondii HOM05D001867 ORTHO05D001708 2.7e-07 59.3 107 37.4
Sp5g02650 Schrenkiella parvula HOM05D001867 ORTHO05D001708 2.7e-07 59.3 112 37.5
SGA_v2.0_scaffold287G47161 Striga asiatica HOM05D001658 ORTHO05D001406 2.7e-07 59.3 105 31.4
GSVIVG01018161001 Vitis vinifera HOM05D001867 ORTHO05D001708 2.7e-07 59.3 113 35.4
Lalb_Chr19g0127421 Lupinus albus HOM05D001867 ORTHO05D001708 3.6e-07 58.9 115 34.8
Potri.002G143800 Populus trichocarpa HOM05D001867 ORTHO05D001708 3.6e-07 58.9 110 38.2
BcaC02g10161 Brassica carinata HOM05D001867 ORTHO05D001708 4.7e-07 58.5 105 41.0
C04p32080 Brassica napus HOM05D001867 ORTHO05D001708 4.7e-07 58.5 105 41.0
BolC4t24761H Brassica oleracea HOM05D001867 ORTHO05D001708 4.7e-07 58.5 105 41.0
FAN01G2176 Fragaria x ananassa HOM05D001867 ORTHO05D001708 4.7e-07 58.5 151 31.1
Potri.001G125900 Populus trichocarpa HOM05D001867 ORTHO05D001708 4.7e-07 58.5 86 45.3
Eucgr.D02083 Eucalyptus grandis HOM05D001867 ORTHO05D001708 6.1e-07 58.2 116 37.1
Gohir.D07G153200 Gossypium hirsutum HOM05D001867 ORTHO05D001708 6.1e-07 58.2 106 34.9
Oeu064580.1 Olea europaea HOM05D001867 ORTHO05D001708 6.1e-07 58.2 150 34.0
Phvul.010G071300 Phaseolus vulgaris HOM05D001867 ORTHO05D001708 6.1e-07 58.2 156 32.1
PGR031G0466 Punica granatum HOM05D001867 ORTHO05D001708 6.1e-07 58.2 97 40.2
Thecc.03G250600 Theobroma cacao HOM05D001867 ORTHO05D001708 6.1e-07 58.2 119 34.5
Aa31LG1G26680 Aethionema arabicum HOM05D001867 ORTHO05D001708 8.0e-07 57.8 126 37.3
AUR62013688 Chenopodium quinoa HOM05D001867 ORTHO05D001708 1.0e-06 57.4 112 37.5
Dinv43665 Davidia involucrata HOM05D001867 ORTHO05D001708 1.4e-06 57.0 106 34.0
FvH4_7g10990 Fragaria vesca HOM05D001867 ORTHO05D001708 1.4e-06 57.0 150 31.3
Psat3g165320 Pisum sativum HOM05D001867 ORTHO05D001708 1.4e-06 57.0 77 42.9
Sabra02G0112100 Salix brachista HOM05D001867 ORTHO05D001708 1.4e-06 57.0 95 40.0
VMungo0331G0147 Vigna mungo HOM05D001867 ORTHO05D001708 1.4e-06 57.0 115 36.5
Ca_02788_v3 Cicer arietinum L. HOM05D015554 ORTHO05D001708 1.8e-06 56.6 73 41.1
FAN03G2065 Fragaria x ananassa HOM05D001867 ORTHO05D001708 1.8e-06 56.6 150 31.3
FAN06G0704 Fragaria x ananassa HOM05D001867 ORTHO05D001708 1.8e-06 56.6 150 31.3
Atru.chr9.385 Acer truncatum HOM05D001658 ORTHO05D001406 2.3e-06 56.2 134 34.3
CANSAT21G0755 Cannabis sativa HOM05D001867 ORTHO05D001708 2.3e-06 56.2 118 34.7
Thhalv10001538m.g Eutrema salsugineum HOM05D001867 ORTHO05D001708 2.3e-06 56.2 133 33.8
FAN10G0443 Fragaria x ananassa HOM05D001867 ORTHO05D001708 2.3e-06 56.2 150 31.3
Nitab4.5_0001688g0050 Nicotiana tabacum HOM05D001658 ORTHO05D001406 2.3e-06 56.2 128 31.2
FAN10G2581 Fragaria x ananassa HOM05D001867 ORTHO05D001708 3.0e-06 55.8 150 31.3
Solyc01g090840.3 Solanum lycopersicum HOM05D001867 ORTHO05D001708 3.0e-06 55.8 116 35.3
BcaB02g08164 Brassica carinata HOM05D001867 ORTHO05D001708 4.0e-06 55.5 110 40.0
DCAR_030031 Daucus carota HOM05D001658 ORTHO05D001406 6.7e-06 54.7 81 34.6
Gohir.A12G216900 Gossypium hirsutum HOM05D001867 ORTHO05D001708 6.7e-06 54.7 69 46.4
Sabra14G0046100 Salix brachista HOM05D001867 ORTHO05D001708 8.8e-06 54.3 111 36.9


User provided reference genes

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