Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008144 Carpinus fangiana HOM05D006728 ORTHO05D007911 6.0e-52 207.2 104 100.0
Haze_13898 Corylus avellana HOM05D006728 ORTHO05D007911 5.8e-47 190.7 104 93.3
CiPaw.03G020000 Carya illinoinensis HOM05D006728 ORTHO05D007911 9.6e-34 146.7 100 70.0
QL09p005234 Quercus lobata HOM05D006728 ORTHO05D007911 4.8e-33 144.4 96 70.8
Dinv41739 Davidia involucrata HOM05D006728 ORTHO05D007911 1.6e-28 129.4 102 65.7
vmacro12473 Vaccinium macrocarpon HOM05D006728 ORTHO05D007911 6.2e-25 117.5 102 61.8
GSVIVG01012775001 Vitis vinifera HOM05D006728 ORTHO05D007911 1.8e-24 115.9 98 58.2
Actinidia23017 Actinidia chinensis HOM05D006728 ORTHO05D007911 4.1e-24 114.8 101 58.4
Rhsim10G0109300 Rhododendron simsii HOM05D006728 ORTHO05D007911 9.0e-24 113.6 80 70.0
FAN08G1230 Fragaria x ananassa HOM05D006728 ORTHO05D007911 9.3e-21 103.6 101 49.5
CAN.G102.5 Capsicum annuum HOM05D006728 ORTHO05D007911 1.2e-20 103.2 84 60.7
FvH4_5g32290 Fragaria vesca HOM05D006728 ORTHO05D007911 1.6e-20 102.8 101 50.5
FAN13G2633 Fragaria x ananassa HOM05D006728 ORTHO05D007911 4.6e-20 101.3 101 49.5
Gorai.009G264600 Gossypium raimondii HOM05D006728 ORTHO05D007911 4.6e-20 101.3 92 53.3
FAN04G0014 Fragaria x ananassa HOM05D006728 ORTHO05D007911 6.1e-20 100.9 101 49.5
FAN18G3195 Fragaria x ananassa HOM05D006728 ORTHO05D007911 1.8e-19 99.4 101 49.5
Gohir.A05G251200 Gossypium hirsutum HOM05D006728 ORTHO05D007911 3.9e-19 98.2 92 51.1
Prupe.1G552000 Prunus persica HOM05D006728 ORTHO05D007911 5.1e-19 97.8 103 49.5
Gohir.D05G252600 Gossypium hirsutum HOM05D006728 ORTHO05D007911 6.7e-19 97.4 86 54.7
Migut.C01293 Erythranthe guttata HOM05D006728 ORTHO05D007911 8.7e-19 97.1 84 57.1
Thecc.03G072600 Theobroma cacao HOM05D006728 ORTHO05D007911 1.1e-18 96.7 73 58.9
Hma1.2p1_0705F.1_g206940 Hydrangea macrophylla HOM05D006728 ORTHO05D007911 1.9e-18 95.9 99 51.5
Eucgr.J01411 Eucalyptus grandis HOM05D006728 ORTHO05D007911 2.5e-18 95.5 103 50.5
Peaxi162Scf00391g00619 Petunia axillaris HOM05D006728 ORTHO05D007911 4.3e-18 94.7 101 51.5
TAR381G1619 Trochodendron aralioides HOM05D006728 ORTHO05D007911 4.3e-18 94.7 71 57.7
Lalb_Chr21g0312581 Lupinus albus HOM05D006728 ORTHO05D007911 1.6e-17 92.8 73 58.9
Migut.J01202 Erythranthe guttata HOM05D006728 ORTHO05D007911 2.8e-17 92.0 103 47.6
unitig_749.g13882 Utricularia gibba HOM05D006728 ORTHO05D007911 3.7e-17 91.7 81 51.9
Ciclev10004396m.g Citrus clementina HOM05D006728 ORTHO05D007911 8.2e-17 90.5 96 49.0
Nitab4.5_0000365g0060 Nicotiana tabacum HOM05D006728 ORTHO05D007911 1.1e-16 90.1 93 52.7
Sabra04G0084300 Salix brachista HOM05D006728 ORTHO05D007911 1.1e-16 90.1 95 45.3
Solyc11g020910.3 Solanum lycopersicum HOM05D006728 ORTHO05D007911 1.4e-16 89.7 84 56.0
Sopen11g011050 Solanum pennellii HOM05D006728 ORTHO05D007911 1.4e-16 89.7 84 56.0
ClCG08G000330 Citrullus lanatus HOM05D006728 ORTHO05D007911 1.8e-16 89.4 75 57.3
PGSC0003DMG400009266 Solanum tuberosum HOM05D006728 ORTHO05D007911 3.1e-16 88.6 84 54.8
Potri.004G133900 Populus trichocarpa HOM05D006728 ORTHO05D007911 4.1e-16 88.2 92 46.7
Sed0021340 Sechium edule HOM05D006728 ORTHO05D007911 5.3e-16 87.8 78 55.1
Glyma.02G174700 Glycine max HOM05D006728 ORTHO05D007911 1.2e-15 86.7 71 59.2
Glyma.20G198666 Glycine max HOM05D006728 ORTHO05D007911 1.2e-15 86.7 68 60.3
Manes.01G125500 Manihot esculenta HOM05D006728 ORTHO05D007911 1.2e-15 86.7 91 48.4
MD15G1410500 Malus domestica HOM05D006728 ORTHO05D007911 1.5e-15 86.3 103 45.6
Atru.chr13.2383 Acer truncatum HOM05D006728 ORTHO05D007911 2.6e-15 85.5 103 50.5
COL.COLO4_24796 Corchorus olitorius HOM05D006728 ORTHO05D007911 5.9e-15 84.3 86 46.5
Cc10_g10290 Coffea canephora HOM05D006728 ORTHO05D007911 1.3e-14 83.2 96 45.8
CDE05G2798 Ceratophyllum demersum HOM05D006728 ORTHO05D007911 2.9e-14 82.0 114 36.8
Nn3g16574 Nelumbo nucifera HOM05D006728 ORTHO05D007911 2.9e-14 82.0 98 46.9
Phvul.L001685 Phaseolus vulgaris HOM05D006728 ORTHO05D007911 3.8e-14 81.6 77 50.6
Lj5g0018420 Lotus japonicus HOM05D006728 ORTHO05D007911 5.0e-14 81.3 78 48.7
CSS0015483 Camellia sinensis var. sinensis HOM05D006728 ORTHO05D007911 1.1e-13 80.1 74 52.7
TWI59G0071 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 2.5e-13 79.0 78 48.7
RcHm_v2.0_Chr7g0228481 Rosa chinensis HOM05D006728 ORTHO05D007911 3.2e-13 78.6 102 42.2
Cpa.g.c30412.3 Carica papaya HOM05D006728 ORTHO05D007911 4.2e-13 78.2 103 47.6
PGR044G1487 Punica granatum HOM05D006728 ORTHO05D007911 5.5e-13 77.8 70 51.4
Nn1g02058 Nelumbo nucifera HOM05D006728 ORTHO05D007911 7.2e-13 77.4 95 45.3
VMungo0720G2132 Vigna mungo HOM05D006728 ORTHO05D007911 7.2e-13 77.4 74 56.8
Ca_09788_v3 Cicer arietinum L. HOM05D006728 ORTHO05D007911 1.2e-12 76.6 76 47.4
SHI29297 Sapria himalayana HOM05D006728 ORTHO05D007911 2.1e-12 75.9 73 46.6
SalBow7G3045 Salvia bowleyana HOM05D006728 ORTHO05D007911 6.1e-12 74.3 53 62.3
Thhalv10024534m.g Eutrema salsugineum HOM05D006728 ORTHO05D007911 1.4e-11 73.2 76 52.6
THA.LOC104799928 Tarenaya hassleriana HOM05D006728 ORTHO05D007911 1.4e-11 73.2 82 48.8
MSTRG.1553 Avicennia marina HOM05D006728 ORTHO05D007911 3.0e-11 72.0 96 41.7
CARHR235190 Cardamine hirsuta HOM05D006728 ORTHO05D007911 3.9e-11 71.6 68 52.9
DCAR_011523 Daucus carota HOM05D006728 ORTHO05D007911 5.1e-11 71.2 69 53.6
TWI23G0528 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 6.7e-11 70.9 83 45.8
arahy.Tifrunner.gnm1.ann1.2Y318K Arachis hypogaea HOM05D006728 ORTHO05D007911 8.8e-11 70.5 87 44.8
Lsat_1_v5_gn_4_133160 Lactuca sativa HOM05D006728 ORTHO05D007911 1.5e-10 69.7 73 46.6
Sp7g25450 Schrenkiella parvula HOM05D006728 ORTHO05D007911 1.5e-10 69.7 83 47.0
AT4G27510 Arabidopsis thaliana HOM05D006728 ORTHO05D007911 2.5e-10 68.9 75 52.0
arahy.Tifrunner.gnm1.ann1.G54CSB Arachis hypogaea HOM05D006728 ORTHO05D007911 5.7e-10 67.8 96 41.7
arahy.Tifrunner.gnm1.ann1.HTR7VF Arachis hypogaea HOM05D006728 ORTHO05D007911 5.7e-10 67.8 96 41.7
ECA232G4554 Erigeron canadensis HOM05D006728 ORTHO05D007911 5.7e-10 67.8 65 44.6
Oeu051790.1 Olea europaea HOM05D006728 ORTHO05D007911 7.4e-10 67.4 51 58.8
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 7.4e-10 67.4 44 65.9
HPP92_000129 Vanilla planifolia HOM05D006728 ORTHO05D007911 1.3e-09 66.6 88 36.4
arahy.Tifrunner.gnm1.ann1.SM6YYV Arachis hypogaea HOM05D006728 ORTHO05D007911 1.7e-09 66.2 96 40.6
Medtr1g072850 Medicago truncatula HOM05D006728 ORTHO05D007911 2.8e-09 65.5 73 49.3
arahy.Tifrunner.gnm1.ann1.PFS1J6 Arachis hypogaea HOM05D006728 ORTHO05D007911 4.8e-09 64.7 96 40.6
TPR.G18562 Trifolium pratense HOM05D006728 ORTHO05D007911 4.8e-09 64.7 79 44.3
Psat6g140120 Pisum sativum HOM05D006728 ORTHO05D007911 1.1e-08 63.5 79 43.0
Carub.0007s1334 Capsella rubella HOM05D006728 ORTHO05D007911 1.4e-08 63.2 74 44.6
Aa31LG5G9990 Aethionema arabicum HOM05D006728 ORTHO05D007911 3.1e-08 62.0 112 33.9
C01p23690 Brassica napus HOM05D006728 ORTHO05D007911 5.3e-08 61.2 76 47.4
BolC1t02321H Brassica oleracea HOM05D006728 ORTHO05D007911 5.3e-08 61.2 76 47.4
MELO3C022215.2 Cucumis melo HOM05D006728 ORTHO05D007911 9.1e-08 60.5 77 42.9
BcaNung07241 Brassica carinata HOM05D006728 ORTHO05D007911 2.0e-07 59.3 75 45.3
A01p18730 Brassica napus HOM05D006728 ORTHO05D007911 4.5e-07 58.2 85 42.4
BraA01t01819Z Brassica rapa HOM05D006728 ORTHO05D007911 5.9e-07 57.8 85 42.4
CsaV3_5G040430 Cucumis sativus L. HOM05D006728 ORTHO05D007911 1.0e-06 57.0 75 41.3
Aqoxy7G02767 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 5.0e-06 54.7 66 45.5
HanXRQChr17g0559021 Helianthus annuus HOM05D006728 ORTHO05D007911 5.0e-06 54.7 74 44.6
ATR0487G015 Amborella trichopoda HOM05D006728 ORTHO05D007911 6.5e-06 54.3 52 48.1


User provided reference genes

Program Settings