Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008120 Carpinus fangiana HOM05D000642 ORTHO05D000483 4.1e-69 264.6 136 100.0
Haze_02660 Corylus avellana HOM05D000642 ORTHO05D000483 1.6e-36 156.4 120 75.8
Cfa011188 Carpinus fangiana HOM05D000642 ORTHO05D000483 3.5e-36 155.2 120 75.0
CiPaw.14G026500 Carya illinoinensis HOM05D000642 ORTHO05D000483 3.8e-30 135.2 116 65.5
CiPaw.13G033700 Carya illinoinensis HOM05D000642 ORTHO05D000483 4.2e-29 131.7 116 65.5
QL04p039347 Quercus lobata HOM05D000642 ORTHO05D000483 7.9e-28 127.5 120 60.0
QL10p012687 Quercus lobata HOM05D000642 ORTHO05D000483 7.9e-28 127.5 120 60.0
CANSAT56G3893 Cannabis sativa HOM05D000642 ORTHO05D000483 1.5e-26 123.2 125 60.0
Prupe.2G140200 Prunus persica HOM05D000642 ORTHO05D000483 2.8e-25 119.0 128 57.0
CsaV3_6G009260 Cucumis sativus L. HOM05D000642 ORTHO05D000483 6.3e-25 117.9 121 56.2
MD07G1117100 Malus domestica HOM05D000642 ORTHO05D000483 1.8e-24 116.3 128 54.7
MD02G1208300 Malus domestica HOM05D000642 ORTHO05D000483 2.4e-24 115.9 128 53.9
MELO3C021152.2 Cucumis melo HOM05D000642 ORTHO05D000483 9.0e-24 114.0 121 55.4
RcHm_v2.0_Chr1g0349381 Rosa chinensis HOM05D000642 ORTHO05D000483 5.0e-22 108.2 129 54.3
FAN03G1042 Fragaria x ananassa HOM05D000642 ORTHO05D000483 1.1e-21 107.1 127 52.8
FAN03G2866 Fragaria x ananassa HOM05D000642 ORTHO05D000483 1.1e-21 107.1 127 52.8
FAN10G3604 Fragaria x ananassa HOM05D000642 ORTHO05D000483 1.4e-21 106.7 127 52.0
FAN01G1752 Fragaria x ananassa HOM05D000642 ORTHO05D000483 3.2e-21 105.5 129 51.9
FvH4_7g11240 Fragaria vesca HOM05D000642 ORTHO05D000483 4.2e-21 105.1 127 52.0
FAN06G2683 Fragaria x ananassa HOM05D000642 ORTHO05D000483 4.2e-21 105.1 127 52.0
FAN06G3316 Fragaria x ananassa HOM05D000642 ORTHO05D000483 7.2e-21 104.4 129 51.9
FAN10G4279 Fragaria x ananassa HOM05D000642 ORTHO05D000483 7.2e-21 104.4 129 51.9
Cpa.g.sc145.2 Carica papaya HOM05D000642 ORTHO05D000483 9.4e-21 104.0 122 54.1
ClCG06G003140 Citrullus lanatus HOM05D000642 ORTHO05D000483 9.4e-21 104.0 128 52.3
Potri.014G066600 Populus trichocarpa HOM05D000642 ORTHO05D000483 3.6e-20 102.1 116 51.7
Sabra14G0046700 Salix brachista HOM05D000642 ORTHO05D000483 4.6e-20 101.7 116 50.9
Potri.002G145000 Populus trichocarpa HOM05D000642 ORTHO05D000483 1.0e-19 100.5 121 47.9
Sabra02G0112900 Salix brachista HOM05D000642 ORTHO05D000483 1.4e-19 100.1 118 50.8
Manes.05G048100 Manihot esculenta HOM05D000642 ORTHO05D000483 2.3e-19 99.4 124 49.2
Duzib138G0332 Durio zibethinus HOM05D000642 ORTHO05D000483 5.1e-19 98.2 120 52.5
Sed0026212 Sechium edule HOM05D000642 ORTHO05D000483 5.1e-19 98.2 119 52.9
Duzib133G1114 Durio zibethinus HOM05D000642 ORTHO05D000483 6.7e-19 97.8 120 50.0
Lalb_Chr03g0039691 Lupinus albus HOM05D000642 ORTHO05D000483 8.8e-19 97.4 134 49.3
Manes.01G268200 Manihot esculenta HOM05D000642 ORTHO05D000483 8.8e-19 97.4 130 45.4
Gohir.A08G030700 Gossypium hirsutum HOM05D000642 ORTHO05D000483 1.1e-18 97.1 122 49.2
TWI59G0294 Tripterygium wilfordii HOM05D000642 ORTHO05D000483 1.1e-18 97.1 118 48.3
Ciclev10019751m.g Citrus clementina HOM05D000642 ORTHO05D000483 3.3e-18 95.5 130 48.5
Gohir.D08G041800 Gossypium hirsutum HOM05D000642 ORTHO05D000483 5.7e-18 94.7 122 48.4
Gorai.004G040500 Gossypium raimondii HOM05D000642 ORTHO05D000483 5.7e-18 94.7 122 48.4
Thecc.01G380400 Theobroma cacao HOM05D000642 ORTHO05D000483 5.7e-18 94.7 120 50.8
Gohir.D08G042501 Gossypium hirsutum HOM05D000642 ORTHO05D000483 9.7e-18 94.0 122 49.2
Gorai.004G041100 Gossypium raimondii HOM05D000642 ORTHO05D000483 9.7e-18 94.0 122 49.2
Gohir.A08G031400 Gossypium hirsutum HOM05D000642 ORTHO05D000483 1.3e-17 93.6 122 47.5
Atru.chr5.267 Acer truncatum HOM05D000642 ORTHO05D000483 1.7e-17 93.2 125 48.0
Thhalv10005850m.g Eutrema salsugineum HOM05D000642 ORTHO05D000483 2.8e-17 92.4 123 45.5
Sp5g02560 Schrenkiella parvula HOM05D000642 ORTHO05D000483 2.8e-17 92.4 127 44.9
Duzib268G1407 Durio zibethinus HOM05D000642 ORTHO05D000483 4.8e-17 91.7 121 47.1
AT3G60680 Arabidopsis thaliana HOM05D000642 ORTHO05D000483 8.2e-17 90.9 144 43.1
AL5G42990 Arabidopsis lyrata HOM05D000642 ORTHO05D000483 1.1e-16 90.5 124 46.8
Dinv44132 Davidia involucrata HOM05D000642 ORTHO05D000483 1.1e-16 90.5 127 48.0
Dinv43681 Davidia involucrata HOM05D000642 ORTHO05D000483 3.1e-16 89.0 125 47.2
TWI14G1003 Tripterygium wilfordii HOM05D000642 ORTHO05D000483 4.1e-16 88.6 118 45.8
Actinidia18714 Actinidia chinensis HOM05D000642 ORTHO05D000483 5.3e-16 88.2 120 48.3
CSS0009702 Camellia sinensis var. sinensis HOM05D000642 ORTHO05D000483 5.3e-16 88.2 125 48.8
COL.COLO4_12511 Corchorus olitorius HOM05D000642 ORTHO05D000483 5.3e-16 88.2 121 46.3
arahy.Tifrunner.gnm1.ann1.RBS802 Arachis hypogaea HOM05D000642 ORTHO05D000483 9.1e-16 87.4 149 43.0
Ca_25719_v3 Cicer arietinum L. HOM05D000642 ORTHO05D000483 9.1e-16 87.4 116 48.3
Lsat_1_v5_gn_7_9020 Lactuca sativa HOM05D000642 ORTHO05D000483 9.1e-16 87.4 128 47.7
THA.LOC104817226 Tarenaya hassleriana HOM05D000642 ORTHO05D000483 9.1e-16 87.4 126 46.8
arahy.Tifrunner.gnm1.ann1.X8X2MM Arachis hypogaea HOM05D000642 ORTHO05D000483 1.2e-15 87.0 149 42.3
Phvul.008G143000 Phaseolus vulgaris HOM05D000642 ORTHO05D000483 1.2e-15 87.0 149 41.6
C08p35630 Brassica napus HOM05D000642 ORTHO05D000483 1.5e-15 86.7 121 46.3
CARHR171080 Cardamine hirsuta HOM05D000642 ORTHO05D000483 1.5e-15 86.7 127 44.9
Lj1g0026580 Lotus japonicus HOM05D000642 ORTHO05D000483 1.5e-15 86.7 146 42.5
Hma1.2p1_0301F.1_g118350 Hydrangea macrophylla HOM05D000642 ORTHO05D000483 2.0e-15 86.3 121 47.9
ECA236G3251 Erigeron canadensis HOM05D000642 ORTHO05D000483 3.4e-15 85.5 127 44.1
Glyma.11G169055 Glycine max HOM05D000642 ORTHO05D000483 3.4e-15 85.5 141 41.8
TAR374G1089 Trochodendron aralioides HOM05D000642 ORTHO05D000483 4.5e-15 85.1 120 47.5
Carub.0005s2742 Capsella rubella HOM05D000642 ORTHO05D000483 7.7e-15 84.3 131 44.3
Aa31LG10G14960 Aethionema arabicum HOM05D000642 ORTHO05D000483 1.0e-14 84.0 123 44.7
A09p52870 Brassica napus HOM05D000642 ORTHO05D000483 1.0e-14 84.0 119 47.1
THA.LOC104802461 Tarenaya hassleriana HOM05D000642 ORTHO05D000483 1.0e-14 84.0 129 43.4
BraA09t40719Z Brassica rapa HOM05D000642 ORTHO05D000483 1.3e-14 83.6 119 47.1
TPR.G39038 Trifolium pratense HOM05D000642 ORTHO05D000483 1.7e-14 83.2 158 38.0
BcaC07g40586 Brassica carinata HOM05D000642 ORTHO05D000483 2.2e-14 82.8 118 46.6
BolC8t51152H Brassica oleracea HOM05D000642 ORTHO05D000483 2.2e-14 82.8 118 46.6
VMungo1383G1273 Vigna mungo HOM05D000642 ORTHO05D000483 6.5e-14 81.3 150 39.3
Glyma.01G078400 Glycine max HOM05D000642 ORTHO05D000483 1.4e-13 80.1 143 39.9
Nn1g01085 Nelumbo nucifera HOM05D000642 ORTHO05D000483 2.5e-13 79.3 117 46.2
PGR042G3412 Punica granatum HOM05D000642 ORTHO05D000483 4.2e-13 78.6 160 38.8
Solyc05g050930.2 Solanum lycopersicum HOM05D000642 ORTHO05D000483 4.2e-13 78.6 124 43.5
Sopen05g029400 Solanum pennellii HOM05D000642 ORTHO05D000483 4.2e-13 78.6 124 43.5
PGSC0003DMG402007021 Solanum tuberosum HOM05D000642 ORTHO05D000483 4.2e-13 78.6 124 43.5
Lj9P566T42 Lonicera japonica HOM05D000642 ORTHO05D000483 1.6e-12 76.6 123 45.5
Medtr0178s0030 Medicago truncatula HOM05D000642 ORTHO05D000483 3.6e-12 75.5 150 37.3
Aqoxy7G00719 Aquilegia oxysepala HOM05D000642 ORTHO05D000483 4.7e-12 75.1 116 44.8
Nn6g34045 Nelumbo nucifera HOM05D000642 ORTHO05D000483 4.7e-12 75.1 125 43.2
Nitab4.5_0003912g0070 Nicotiana tabacum HOM05D000642 ORTHO05D000483 4.7e-12 75.1 120 42.5
Sc02g0002720 Simmondsia chinensis HOM05D000642 ORTHO05D000483 4.7e-12 75.1 119 46.2
EL10Ac1g00845 Beta vulgaris HOM05D000642 ORTHO05D000483 7.9e-12 74.3 118 45.8
Nitab4.5_0001329g0050 Nicotiana tabacum HOM05D000642 ORTHO05D000483 1.4e-11 73.6 120 42.5
HanXRQChr04g0122641 Helianthus annuus HOM05D000642 ORTHO05D000483 1.8e-11 73.2 126 42.1
DCAR_031516 Daucus carota HOM05D000642 ORTHO05D000483 3.0e-11 72.4 117 42.7
MSTRG.20731 Avicennia marina HOM05D000642 ORTHO05D000483 6.7e-11 71.2 118 41.5
Cc00_g13840 Coffea canephora HOM05D000642 ORTHO05D000483 6.7e-11 71.2 126 40.5
AUR62004174 Chenopodium quinoa HOM05D000642 ORTHO05D000483 2.6e-10 69.3 117 43.6
Peaxi162Scf00959g00013 Petunia axillaris HOM05D000642 ORTHO05D000483 2.6e-10 69.3 117 41.0
CAN.G106.22 Capsicum annuum HOM05D000642 ORTHO05D000483 7.4e-10 67.8 122 40.2
AUR62013673 Chenopodium quinoa HOM05D000642 ORTHO05D000483 7.4e-10 67.8 117 43.6
SalBow5G1362 Salvia bowleyana HOM05D000642 ORTHO05D000483 7.4e-10 67.8 119 42.9
Oeu055512.1 Olea europaea HOM05D000642 ORTHO05D000483 9.7e-10 67.4 121 38.0
Rhsim07G0030300 Rhododendron simsii HOM05D000642 ORTHO05D000483 1.3e-09 67.0 134 40.3
SGA_v2.0_scaffold153G36979 Striga asiatica HOM05D000642 ORTHO05D000483 2.2e-09 66.2 121 40.5
Eucgr.E01476 Eucalyptus grandis HOM05D000642 ORTHO05D000483 3.7e-09 65.5 195 30.8
PSO017G3251 Papaver somniferum HOM05D000642 ORTHO05D000483 6.3e-09 64.7 117 40.2
PSO170G5515 Papaver somniferum HOM05D000642 ORTHO05D000483 1.4e-08 63.5 117 39.3
unitig_0.g1305 Utricularia gibba HOM05D000642 ORTHO05D000483 1.4e-08 63.5 116 41.4
CDE04G0651 Ceratophyllum demersum HOM05D000642 ORTHO05D000483 2.4e-08 62.8 113 40.7
CDE12G0307 Ceratophyllum demersum HOM05D000642 ORTHO05D000483 5.3e-08 61.6 113 39.8
Ah.05g174980 Amaranthus hybridus HOM05D000642 ORTHO05D000483 2.0e-07 59.7 117 38.5
BolC4t24751H Brassica oleracea HOM05D000642 ORTHO05D016778 2.9e-06 55.8 56 51.8
ATR1152G107 Amborella trichopoda HOM05D000642 ORTHO05D000483 6.5e-06 54.7 119 35.3


User provided reference genes

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