Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 1.4e-50 202.6 102 100.0
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 7.7e-44 180.3 145 69.7
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 3.5e-36 154.8 143 62.9
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 2.5e-34 148.7 141 57.4
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 9.4e-34 146.7 118 65.3
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 1.0e-32 143.3 138 57.2
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 1.4e-32 142.9 140 56.4
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 2.3e-32 142.1 142 60.6
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 6.8e-32 140.6 140 57.9
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 6.8e-32 140.6 140 57.9
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 6.8e-32 140.6 138 56.5
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 1.2e-31 139.8 138 59.4
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 1.5e-31 139.4 140 55.7
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 1.5e-31 139.4 138 55.8
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 1.5e-31 139.4 138 55.8
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 5.7e-31 137.5 138 58.7
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 7.5e-31 137.1 142 57.0
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 7.5e-31 137.1 142 57.0
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 7.5e-31 137.1 142 57.0
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 7.5e-31 137.1 142 57.0
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 2.2e-30 135.6 134 56.7
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 3.7e-30 134.8 133 60.9
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 4.8e-30 134.4 138 57.2
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 6.3e-30 134.0 134 58.2
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 1.1e-29 133.3 134 58.2
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 1.8e-29 132.5 138 56.5
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 1.8e-29 132.5 138 56.5
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 1.8e-29 132.5 138 56.5
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 1.8e-29 132.5 139 57.6
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 3.1e-29 131.7 140 55.7
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 4.1e-29 131.3 142 53.5
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 7.0e-29 130.6 140 52.1
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 7.0e-29 130.6 137 53.3
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 9.1e-29 130.2 140 55.0
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 5.9e-28 127.5 140 55.0
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 1.3e-27 126.3 141 53.9
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 2.3e-27 125.6 143 54.5
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 6.5e-27 124.0 141 53.2
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 8.6e-27 123.6 141 53.2
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 1.9e-26 122.5 143 53.1
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 2.5e-26 122.1 141 51.1
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 7.2e-26 120.6 138 50.7
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 2.1e-25 119.0 134 52.2
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 2.1e-25 119.0 155 44.5
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 2.8e-25 118.6 139 50.4
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 3.6e-25 118.2 139 50.4
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 1.0e-24 116.7 139 50.4
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 1.4e-24 116.3 139 53.2
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 1.8e-24 115.9 134 51.5
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 2.3e-24 115.5 137 52.6
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 2.3e-24 115.5 138 48.6
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 3.0e-24 115.2 135 51.1
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 3.0e-24 115.2 135 50.4
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 8.9e-24 113.6 141 51.1
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 1.2e-23 113.2 140 48.6
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 1.5e-23 112.8 139 49.6
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 2.6e-23 112.1 143 46.9
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 3.4e-23 111.7 138 48.6
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 3.4e-23 111.7 142 45.8
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 3.4e-23 111.7 69 81.2
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 3.4e-23 111.7 140 48.6
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 4.4e-23 111.3 141 47.5
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 7.5e-23 110.5 142 46.5
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 7.5e-23 110.5 138 47.8
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 7.5e-23 110.5 140 47.1
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 9.8e-23 110.2 138 49.3
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 1.3e-22 109.8 137 48.9
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 2.8e-22 108.6 100 62.0
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 3.7e-22 108.2 137 46.7
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 6.3e-22 107.5 139 46.8
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 1.1e-21 106.7 138 47.8
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 1.4e-21 106.3 141 46.1
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 2.4e-21 105.5 134 49.3
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 2.4e-21 105.5 134 48.5
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 3.1e-21 105.1 138 46.4
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 3.1e-21 105.1 137 48.2
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 3.1e-21 105.1 119 55.5
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 4.1e-21 104.8 137 46.7
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 5.4e-21 104.4 131 47.3
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 7.0e-21 104.0 143 44.8
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 9.2e-21 103.6 142 43.7
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 1.2e-20 103.2 96 60.4
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 1.6e-20 102.8 138 46.4
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 2.0e-20 102.4 131 48.1
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 3.5e-20 101.7 144 43.8
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 4.5e-20 101.3 138 43.5
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 7.8e-20 100.5 141 46.1
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 1.0e-19 100.1 139 43.2
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 2.9e-19 98.6 134 44.8
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 5.0e-19 97.8 63 79.4
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 5.0e-19 97.8 139 43.9
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 8.6e-19 97.1 138 44.9
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 2.5e-18 95.5 112 53.6
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 4.3e-18 94.7 140 42.9
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 1.2e-17 93.2 139 45.3
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 1.8e-16 89.4 135 43.0
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 3.0e-16 88.6 141 44.0
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.2e-15 86.7 53 77.4
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 4.4e-15 84.7 77 53.2
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 7.5e-15 84.0 61 59.0
Hma1.2p1_0935F.1_g238700 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 1.3e-14 83.2 41 92.7
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 1.3e-14 83.2 98 53.1
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 1.7e-14 82.8 128 37.5
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 2.9e-14 82.0 70 54.3
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 1.2e-12 76.6 130 37.7
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.0e-11 73.6 112 42.9
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 2.5e-10 68.9 113 39.8
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 2.5e-10 68.9 111 38.7
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 5.6e-10 67.8 86 44.2
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 1.2e-07 60.1 79 40.5
PRCOL_00001928 Prasinoderma coloniale HOM05D006738 ORTHO05D008191 1.7e-06 56.2 51 47.1
Zm00001eb260580 Zea mays HOM05D006738 ORTHO05D008191 8.3e-06 53.9 119 32.8


User provided reference genes

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