Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008093 Carpinus fangiana HOM05D007884 ORTHO05D009968 2.0e-308 1061.6 529 100.0
QL09p002129 Quercus lobata HOM05D007884 ORTHO05D009968 3.8e-211 738.4 539 71.2
Haze_13924 Corylus avellana HOM05D007884 ORTHO05D009968 1.2e-209 733.4 439 86.6
CiPaw.03G016000 Carya illinoinensis HOM05D007884 ORTHO05D009968 1.2e-135 487.6 390 64.9
Prupe.1G544500 Prunus persica HOM05D007884 ORTHO05D009968 4.8e-121 439.1 525 49.1
Potri.019G075900 Populus trichocarpa HOM05D007884 ORTHO05D009968 3.5e-116 422.9 531 47.6
Sed0007017 Sechium edule HOM05D007884 ORTHO05D009968 2.3e-107 393.7 525 45.7
Sabra19G0086300 Salix brachista HOM05D007884 ORTHO05D009968 9.7e-106 388.3 521 46.4
CANSAT25G3642 Cannabis sativa HOM05D007884 ORTHO05D009968 5.9e-103 379.0 540 42.4
Thecc.08G176500 Theobroma cacao HOM05D007884 ORTHO05D009968 3.3e-98 363.2 519 43.7
RcHm_v2.0_Chr7g0232061 Rosa chinensis HOM05D007884 ORTHO05D009968 1.1e-93 348.2 523 42.3
Dinv09394 Davidia involucrata HOM05D007884 ORTHO05D009968 1.6e-92 344.4 391 47.6
ClCG10G005030 Citrullus lanatus HOM05D007884 ORTHO05D009968 5.1e-91 339.3 428 45.3
Duzib177G0356 Durio zibethinus HOM05D007884 ORTHO05D009968 4.4e-90 336.3 522 42.1
MD08G1213200 Malus domestica HOM05D007884 ORTHO05D009968 5.7e-90 335.9 518 43.4
TWI75G0081 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 1.1e-88 331.6 542 41.0
FvH4_5g33340 Fragaria vesca HOM05D007884 ORTHO05D009968 1.8e-88 330.9 523 38.8
FAN18G0070 Fragaria x ananassa HOM05D007884 ORTHO05D009968 1.8e-88 330.9 523 38.8
Cc11_g04640 Coffea canephora HOM05D007884 ORTHO05D009968 3.1e-88 330.1 386 45.3
CsaV3_4G033680 Cucumis sativus L. HOM05D007884 ORTHO05D009968 9.1e-88 328.6 520 40.8
Hma1.2p1_0004F.1_g003780 Hydrangea macrophylla HOM05D007884 ORTHO05D009968 2.0e-87 327.4 531 40.9
Gorai.001G097200 Gossypium raimondii HOM05D007884 ORTHO05D009968 2.9e-86 323.6 386 45.6
Lj9P699T19 Lonicera japonica HOM05D007884 ORTHO05D009968 2.9e-86 323.6 412 44.9
Ciclev10019950m.g Citrus clementina HOM05D007884 ORTHO05D009968 3.2e-85 320.1 437 44.6
Gohir.D07G090700 Gossypium hirsutum HOM05D007884 ORTHO05D009968 7.2e-85 318.9 386 44.8
Gohir.A07G085300 Gossypium hirsutum HOM05D007884 ORTHO05D009968 1.0e-83 315.1 386 44.8
Actinidia29389 Actinidia chinensis HOM05D007884 ORTHO05D009968 4.4e-82 309.7 351 47.0
PGR031G2984 Punica granatum HOM05D007884 ORTHO05D009968 7.0e-80 302.4 370 43.2
Sc26g0002320 Simmondsia chinensis HOM05D007884 ORTHO05D009968 9.1e-80 302.0 375 43.7
TAR383G0946 Trochodendron aralioides HOM05D007884 ORTHO05D009968 2.2e-78 297.4 384 44.5
COL.COLO4_22419 Corchorus olitorius HOM05D007884 ORTHO05D009968 3.2e-77 293.5 354 44.9
Nitab4.5_0006974g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 7.2e-77 292.4 508 35.4
CSS0033652 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 3.6e-76 290.0 400 42.0
CSS0035845 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 3.6e-76 290.0 400 42.0
Eucgr.F02657 Eucalyptus grandis HOM05D007884 ORTHO05D009968 1.0e-75 288.5 435 40.0
Aqoxy7G02021 Aquilegia oxysepala HOM05D007884 ORTHO05D009968 5.2e-75 286.2 371 41.5
Cpa.g.sc21.77 Carica papaya HOM05D007884 ORTHO05D009968 5.2e-75 286.2 544 36.9
MELO3C016698.2 Cucumis melo HOM05D007884 ORTHO05D009968 5.7e-74 282.7 340 46.8
FAN04G3024 Fragaria x ananassa HOM05D007884 ORTHO05D009968 5.9e-71 272.7 523 34.8
Oeu023202.1 Olea europaea HOM05D007884 ORTHO05D009968 2.9e-70 270.4 410 39.8
TWI18G0215 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 6.5e-70 269.2 354 44.9
Phvul.003G017800 Phaseolus vulgaris HOM05D007884 ORTHO05D009968 5.5e-69 266.2 376 39.6
Lj2g0010779 Lotus japonicus HOM05D007884 ORTHO05D009968 4.7e-68 263.1 376 39.6
MSTRG.1590 Avicennia marina HOM05D007884 ORTHO05D009968 3.0e-67 260.4 478 36.2
FAN08G1312 Fragaria x ananassa HOM05D007884 ORTHO05D009968 1.2e-66 258.5 311 44.1
VMungo1309G1853 Vigna mungo HOM05D007884 ORTHO05D009968 2.0e-66 257.7 376 38.8
Glyma.19G044700 Glycine max HOM05D007884 ORTHO05D009968 2.6e-66 257.3 376 38.8
DCAR_014075 Daucus carota HOM05D007884 ORTHO05D009968 2.2e-65 254.2 379 36.4
Migut.C01368 Erythranthe guttata HOM05D007884 ORTHO05D009968 2.2e-65 254.2 345 41.2
PSO242G0004 Papaver somniferum HOM05D007884 ORTHO05D009968 3.7e-65 253.4 432 36.6
Zm00001eb001440 Zea mays HOM05D007884 ORTHO05D009968 6.3e-65 252.7 378 39.7
HanXRQChr17g0559001 Helianthus annuus HOM05D007884 ORTHO05D009968 2.4e-64 250.8 413 38.3
Nitab4.5_0005550g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 4.1e-64 250.0 515 34.4
PGSC0003DMG400013578 Solanum tuberosum HOM05D007884 ORTHO05D009968 5.9e-63 246.1 373 37.5
Ca_26346_v3 Cicer arietinum L. HOM05D007884 ORTHO05D009968 7.7e-63 245.7 273 47.6
Lsat_1_v5_gn_4_133080 Lactuca sativa HOM05D007884 ORTHO05D009968 1.7e-62 244.6 398 36.2
SGA_v2.0_scaffold118G32599 Striga asiatica HOM05D007884 ORTHO05D009968 3.8e-62 243.4 534 33.9
EL10Ac1g01640 Beta vulgaris HOM05D007884 ORTHO05D009968 8.6e-62 242.3 430 34.2
AUR62022398 Chenopodium quinoa HOM05D007884 ORTHO05D009968 1.1e-61 241.9 516 33.1
Medtr6g017035 Medicago truncatula HOM05D007884 ORTHO05D009968 1.5e-61 241.5 373 38.1
Psat1g062080 Pisum sativum HOM05D007884 ORTHO05D009968 5.5e-61 239.6 370 37.3
Nn4g26038 Nelumbo nucifera HOM05D007884 ORTHO05D009968 1.2e-60 238.4 386 38.3
CAN.G63.2 Capsicum annuum HOM05D007884 ORTHO05D009968 1.6e-60 238.0 368 36.7
Nn3g17503 Nelumbo nucifera HOM05D007884 ORTHO05D009968 1.6e-60 238.0 386 38.3
Sopen07g021970 Solanum pennellii HOM05D007884 ORTHO05D009968 6.1e-60 236.1 368 37.2
Lalb_Chr02g0158331 Lupinus albus HOM05D007884 ORTHO05D009968 4.0e-59 233.4 519 33.1
Os03g0119700 Oryza sativa ssp. japonica HOM05D007884 ORTHO05D009968 2.6e-58 230.7 377 37.1
Manes.18G118701 Manihot esculenta HOM05D007884 ORTHO05D009968 7.0e-56 222.6 289 43.6
Ah.05g168770 Amaranthus hybridus HOM05D007884 ORTHO05D009968 3.8e-54 216.9 361 35.5
HPP92_008446 Vanilla planifolia HOM05D007884 ORTHO05D009968 2.3e-51 207.6 372 34.4
TPR.G21024 Trifolium pratense HOM05D007884 ORTHO05D009968 9.8e-50 202.2 373 34.6
Atru.chr13.2470 Acer truncatum HOM05D007884 ORTHO05D009968 2.0e-47 194.5 294 39.8
HPP92_008463 Vanilla planifolia HOM05D007884 ORTHO05D009968 3.3e-45 187.2 372 32.0
MBI04_g00944_MAGBIO Magnolia biondii HOM05D007884 ORTHO05D009968 1.4e-43 181.8 212 44.3
AUR62043537 Chenopodium quinoa HOM05D007884 ORTHO05D009968 6.4e-41 172.9 284 34.9
CDE04G2395 Ceratophyllum demersum HOM05D007884 ORTHO05D009968 4.4e-34 150.2 258 35.3
ECA232G0955 Erigeron canadensis HOM05D007884 ORTHO05D009968 9.9e-34 149.1 290 32.4
ATR0716G085 Amborella trichopoda HOM05D007884 ORTHO05D009968 1.3e-30 138.7 352 30.4
CAN.G6574.1 Capsicum annuum HOM05D007884 ORTHO05D009968 1.7e-17 95.1 239 28.5
SEGI_26452 Sequoiadendron giganteum HOM05D007884 ORTHO05D009968 9.3e-16 89.4 365 23.3
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 5.1e-14 83.6 245 26.9
Hund17562 Selenicereus undatus HOM05D007884 ORTHO05D009968 8.7e-14 82.8 77 48.1
Lalb_Chr03g0033351 Lupinus albus HOM05D007655 ORTHO05D009698 3.3e-13 80.9 280 29.6
ATR0030G034 Amborella trichopoda HOM05D007655 ORTHO05D009698 4.3e-13 80.5 284 23.6
Actinidia00669 Actinidia chinensis HOM05D007655 ORTHO05D009698 1.6e-12 78.6 225 28.4
Lalb_Chr19g0131421 Lupinus albus HOM05D007655 ORTHO05D009698 2.1e-12 78.2 153 33.3
Ca_25253_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 2.0e-10 71.6 262 26.0
Psat1g113880 Pisum sativum HOM05D007655 ORTHO05D009698 7.6e-10 69.7 276 22.8
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 9.9e-10 69.3 230 25.7
Ciclev10025762m.g Citrus clementina HOM05D000891 ORTHO05D000761 4.9e-09 67.0 110 33.6
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 4.9e-09 67.0 335 22.7
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 8.4e-09 66.2 237 24.5
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 1.4e-08 65.5 235 26.0
TAR628G1172 Trochodendron aralioides HOM05D006858 ORTHO05D008767 1.4e-08 65.5 134 27.6
SEGI_06165 Sequoiadendron giganteum HOM05D007655 ORTHO05D009698 3.2e-08 64.3 153 29.4
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 4.2e-08 63.9 235 23.4
CAN.G1503.13 Capsicum annuum HOM05D006174 ORTHO05D007987 4.2e-08 63.9 165 30.3
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 5.4e-08 63.5 198 27.3
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 5.4e-08 63.5 235 25.5
Thecc.05G003500 Theobroma cacao HOM05D008684 ORTHO05D010796 5.4e-08 63.5 267 24.3
DCAR_029510 Daucus carota HOM05D007655 ORTHO05D009698 7.1e-08 63.2 272 22.8
CAN.G1161.24 Capsicum annuum HOM05D007655 ORTHO05D009698 9.3e-08 62.8 286 20.6
Gohir.D11G013666 Gossypium hirsutum HOM05D000424 ORTHO05D000355 9.3e-08 62.8 78 35.9
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 1.6e-07 62.0 237 23.6
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 1.6e-07 62.0 237 23.6
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 1.6e-07 62.0 134 28.4
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.6e-07 62.0 217 26.7
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 4.6e-07 60.5 237 22.8
MD14G1187700 Malus domestica HOM05D007383 ORTHO05D009254 4.6e-07 60.5 102 31.4
BcaB01g00827 Brassica carinata HOM05D002460 ORTHO05D002716 6.0e-07 60.1 168 29.2
SGA_v2.0_scaffold63G21630 Striga asiatica HOM05D005622 ORTHO05D002854 6.0e-07 60.1 195 24.6
TAR629G1749 Trochodendron aralioides HOM05D007157 ORTHO05D009045 6.0e-07 60.1 361 22.7
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 7.9e-07 59.7 201 27.9
TWI73G0154 Tripterygium wilfordii HOM05D007937 ORTHO05D010000 7.9e-07 59.7 397 21.4
CAN.G986.34 Capsicum annuum HOM05D004783 ORTHO05D005581 1.0e-06 59.3 169 20.7
Dinv22714 Davidia involucrata HOM05D008684 ORTHO05D010796 1.0e-06 59.3 275 24.0
Lsat_1_v5_gn_2_76721 Lactuca sativa HOM05D000891 ORTHO05D000761 1.0e-06 59.3 110 29.1
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 1.0e-06 59.3 275 26.9
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 1.3e-06 58.9 211 20.9
Cpa.g.sc108.57 Carica papaya HOM05D007358 ORTHO05D009117 1.3e-06 58.9 188 23.4
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 1.3e-06 58.9 134 27.6
Sc04g0005770 Simmondsia chinensis HOM05D000424 ORTHO05D000355 1.3e-06 58.9 89 33.7
DCAR_013708 Daucus carota HOM05D000424 ORTHO05D008586 1.8e-06 58.5 100 31.0
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 2.3e-06 58.2 198 27.3
Thecc.03G003000 Theobroma cacao HOM05D007383 ORTHO05D009254 2.3e-06 58.2 173 24.9
arahy.Tifrunner.gnm1.ann1.0N6WQ2 Arachis hypogaea HOM05D000855 ORTHO05D008530 3.0e-06 57.8 162 24.7
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 3.0e-06 57.8 108 29.6
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 3.0e-06 57.8 215 25.1
HanXRQChr14g0440391 Helianthus annuus HOM05D000891 ORTHO05D000761 3.0e-06 57.8 110 29.1
Ah.11g048060 Amaranthus hybridus HOM05D005362 ORTHO05D006895 3.9e-06 57.4 301 22.3
Duzib093G0470 Durio zibethinus HOM05D008684 ORTHO05D010796 3.9e-06 57.4 266 21.8
Duzib205G1468 Durio zibethinus HOM05D005362 ORTHO05D006895 3.9e-06 57.4 109 32.1
HanXRQChr16g0500321 Helianthus annuus HOM05D000424 ORTHO05D000355 3.9e-06 57.4 78 35.9
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 3.9e-06 57.4 133 31.6
Lj1g0020630 Lotus japonicus HOM05D008684 ORTHO05D010796 3.9e-06 57.4 175 26.9
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 5.1e-06 57.0 144 31.2
MBI13_g05940_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 5.1e-06 57.0 235 23.8
MD10G1047800 Malus domestica HOM05D004783 ORTHO05D005581 5.1e-06 57.0 92 29.3
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 6.7e-06 56.6 175 28.6
Actinidia36218 Actinidia chinensis HOM05D007157 ORTHO05D009045 8.7e-06 56.2 287 25.1
Cc02_g24080 Coffea canephora HOM05D000424 ORTHO05D008586 8.7e-06 56.2 107 25.2
ECA238G4369 Erigeron canadensis HOM05D000891 ORTHO05D000761 8.7e-06 56.2 108 27.8
Oeu006556.1 Olea europaea HOM05D001779 ORTHO05D001753 8.7e-06 56.2 158 27.8
QL11p014332 Quercus lobata HOM05D004271 ORTHO05D006011 8.7e-06 56.2 160 25.0
Sc10g0009660 Simmondsia chinensis HOM05D005362 ORTHO05D006895 8.7e-06 56.2 371 23.5
SGA_v2.0_scaffold296G47545 Striga asiatica HOM05D004783 ORTHO05D005581 8.7e-06 56.2 162 22.8
Zm00001eb398710 Zea mays HOM05D011046 ORTHO05D013342 8.7e-06 56.2 160 30.6


User provided reference genes

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