Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.8e-309 1065.1 539 100.0
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 4.6e-281 970.7 538 92.6
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 1.2e-249 866.3 534 82.2
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 1.2e-233 813.1 538 78.6
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 2.5e-226 788.9 538 74.7
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 8.3e-222 773.9 534 72.1
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 2.1e-220 769.2 519 73.6
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 2.1e-220 769.2 531 73.1
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 2.7e-220 768.8 534 73.4
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 1.7e-219 766.1 535 72.5
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 2.1e-217 759.2 529 72.0
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 4.7e-217 758.1 534 71.7
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 4.7e-217 758.1 534 71.7
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 8.1e-217 757.3 534 71.3
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 1.1e-216 756.9 532 70.7
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.8e-216 756.1 532 70.7
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 7.5e-215 750.7 534 70.2
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 3.7e-214 748.4 536 71.8
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 6.4e-214 747.7 535 71.2
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 1.4e-213 746.5 538 70.4
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 5.4e-213 744.6 553 68.9
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 2.7e-212 742.3 533 70.5
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 5.1e-211 738.0 534 68.7
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 1.5e-210 736.5 529 69.2
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.1e-209 732.6 559 67.8
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 3.4e-207 725.3 534 68.5
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 6.4e-206 721.1 526 69.2
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 7.1e-205 717.6 519 69.2
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 9.2e-205 717.2 538 67.1
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 2.7e-204 715.7 533 68.3
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 1.7e-203 713.0 537 67.0
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 1.7e-203 713.0 532 68.4
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 2.3e-203 712.6 539 68.3
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 6.6e-203 711.1 524 67.4
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 1.1e-202 710.3 545 66.2
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 1.5e-202 709.9 543 67.6
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.1e-201 706.1 524 67.6
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 2.1e-201 706.1 548 66.6
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 2.8e-201 705.7 578 64.4
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 2.8e-201 705.7 526 68.3
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 1.4e-200 703.4 547 64.9
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 1.5e-199 699.9 516 67.4
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 2.0e-199 699.5 527 66.8
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 2.6e-199 699.1 528 66.7
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 9.9e-199 697.2 534 66.7
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 1.3e-198 696.8 533 66.0
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 2.2e-198 696.0 527 66.2
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.2e-198 696.0 540 65.4
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 4.2e-197 691.8 529 66.5
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 6.0e-196 688.0 586 62.6
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 1.0e-195 687.2 524 65.6
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 3.0e-195 685.6 544 63.4
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 5.6e-194 681.4 534 64.0
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 3.6e-193 678.7 528 65.9
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 1.1e-192 677.2 529 65.4
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 2.4e-192 676.0 533 65.9
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 2.4e-192 676.0 562 62.6
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 5.8e-191 671.4 582 60.3
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 7.6e-191 671.0 524 63.4
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 7.6e-191 671.0 515 64.7
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 1.7e-190 669.8 524 63.7
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 4.9e-190 668.3 524 63.7
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 4.9e-190 668.3 524 64.7
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 1.1e-189 667.2 490 70.0
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 5.4e-189 664.8 519 63.6
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 9.3e-189 664.1 527 63.8
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 2.1e-188 662.9 524 64.1
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 2.1e-188 662.9 533 63.4
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.8e-187 659.8 524 63.7
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 6.7e-187 657.9 518 64.3
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 2.5e-186 656.0 549 63.2
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 1.3e-185 653.7 535 62.8
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.8e-184 649.8 524 62.8
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 3.3e-178 629.0 452 68.6
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 5.8e-175 618.2 538 60.4
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.8e-171 606.7 445 69.2
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 3.9e-171 605.5 543 58.7
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.9e-170 603.2 505 61.6
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 7.4e-170 601.3 525 59.4
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 8.2e-169 597.8 523 58.9
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 9.0e-168 594.3 526 58.4
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 3.4e-167 592.4 523 58.5
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 7.7e-167 591.3 434 68.9
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 1.3e-166 590.5 523 57.9
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 8.8e-163 577.8 526 57.0
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 5.7e-162 575.1 524 56.7
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.3e-158 563.9 532 56.4
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 2.2e-158 563.1 523 56.4
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 4.1e-152 542.3 532 54.9
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 2.0e-143 513.5 407 63.1
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 8.5e-142 508.1 415 61.7
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.0e-139 499.6 390 63.6
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 5.7e-138 495.4 568 50.4
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 8.8e-131 471.5 521 47.2
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 2.9e-126 456.4 540 47.0
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 9.5e-125 451.4 543 45.5
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 2.3e-118 430.3 353 62.6
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 8.6e-118 428.3 353 62.3
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 3.3e-117 426.4 492 49.0
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 4.3e-109 399.4 285 71.2
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 3.9e-102 376.3 547 39.1
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 5.6e-101 372.5 287 65.9
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 3.3e-93 346.7 464 42.0
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 3.3e-93 346.7 545 38.7
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 6.2e-84 315.8 202 78.7
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 8.4e-81 305.4 287 57.5
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.5e-77 294.7 388 43.3
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 3.7e-68 263.5 569 31.8
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 9.3e-64 248.8 550 32.4
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.5e-63 246.9 212 59.9
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.6e-58 230.7 184 62.5
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 4.6e-55 219.9 150 69.3
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 8.7e-54 215.7 134 80.6
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 1.5e-53 214.9 546 29.9
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 9.0e-51 205.7 129 80.6
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 7.9e-47 192.6 168 56.0
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 5.9e-42 176.4 123 66.7
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 9.7e-37 159.1 96 78.1
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.7e-36 158.3 113 72.6
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 2.4e-35 154.5 99 80.8
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 1.5e-32 145.2 85 83.5
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.1e-27 129.0 100 65.0
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 2.5e-24 117.9 149 44.3
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 1.7e-17 95.1 115 52.2
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 1.1e-16 92.4 117 47.0
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 1.9e-16 91.7 74 62.2
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 4.2e-16 90.5 71 63.4
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 6.1e-15 86.7 73 60.3
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 6.1e-15 86.7 73 60.3
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 8.0e-15 86.3 73 60.3
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 5.9e-10 70.1 49 69.4
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 2.3e-09 68.2 68 54.4
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 2.5e-08 64.7 43 69.8
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 9.5e-08 62.8 76 51.3
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 1.6e-07 62.0 85 49.4
arahy.Tifrunner.gnm1.ann1.E660H8 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.3e-06 58.2 35 77.1
arahy.Tifrunner.gnm1.ann1.KG76U8 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.3e-06 58.2 35 77.1
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 2.3e-06 58.2 269 25.3


User provided reference genes

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