Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.5e-192 676.0 343 100.0
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.6e-181 639.4 373 89.3
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 3.7e-122 442.2 367 66.2
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.7e-119 433.3 367 64.3
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.8e-113 413.3 356 64.3
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 5.0e-103 378.6 353 58.9
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 8.8e-100 367.9 352 58.2
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 2.6e-96 356.3 387 54.8
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 9.7e-91 337.8 348 55.5
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.3e-90 337.4 367 54.2
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 2.4e-89 333.2 356 54.5
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.2e-88 330.9 347 54.2
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.0e-88 330.1 371 55.0
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 5.9e-88 328.6 368 54.3
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 7.7e-88 328.2 374 52.9
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.3e-87 327.4 378 53.4
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.4e-86 323.9 357 54.3
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 7.2e-86 321.6 346 53.8
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 9.4e-86 321.2 371 53.6
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.6e-85 320.5 354 55.9
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.7e-85 319.7 377 52.3
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 6.1e-85 318.5 373 52.0
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.0e-84 317.8 374 51.6
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 2.3e-84 316.6 384 49.7
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.3e-84 316.6 341 55.1
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.3e-84 316.6 341 54.8
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.9e-84 315.8 373 51.2
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 6.7e-84 315.1 341 54.5
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 6.7e-84 315.1 368 52.2
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.5e-83 313.9 371 51.5
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.4e-81 307.4 348 52.9
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.1e-81 306.2 341 54.3
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 7.0e-81 305.1 377 50.1
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.6e-80 303.9 343 49.9
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.3e-79 300.8 374 49.2
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.9e-79 299.7 343 49.3
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.8e-79 299.3 352 51.7
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.2e-78 296.2 380 48.2
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 3.2e-78 296.2 362 49.7
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 5.5e-78 295.4 348 53.4
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 9.4e-78 294.7 351 51.3
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.2e-77 294.3 363 49.6
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 3.6e-77 292.7 348 53.2
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.7e-77 292.4 353 52.1
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.6e-75 286.6 354 50.0
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.2e-74 283.5 373 46.4
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 3.7e-74 282.7 388 46.6
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.8e-73 280.4 418 45.0
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 4.1e-73 279.3 356 50.3
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.5e-72 275.8 352 49.7
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.3e-71 274.2 351 49.3
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 4.2e-70 269.2 413 42.6
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.0e-68 264.6 363 47.7
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 7.5e-67 258.5 322 51.9
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 2.8e-66 256.5 363 46.3
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 7.0e-65 251.9 350 48.6
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 7.0e-65 251.9 337 44.5
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 7.0e-65 251.9 355 46.2
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.6e-64 250.8 386 44.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 5.0e-63 245.7 403 43.7
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 8.6e-63 245.0 298 49.0
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 8.6e-63 245.0 298 49.0
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 3.3e-62 243.0 344 44.5
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 7.2e-62 241.9 346 42.2
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 4.4e-59 232.6 350 44.6
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 8.3e-58 228.4 348 42.0
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 8.3e-58 228.4 400 39.5
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 3.2e-57 226.5 370 41.6
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 5.4e-57 225.7 343 42.3
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.2e-56 224.6 353 40.5
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.0e-56 223.8 357 42.6
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.3e-55 220.3 385 38.4
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 6.6e-55 218.8 347 40.1
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 6.6e-55 218.8 366 41.8
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.9e-54 217.2 347 40.6
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.3e-54 216.5 350 40.6
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 4.3e-54 216.1 339 41.9
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.8e-53 213.4 304 43.8
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.8e-53 213.4 382 37.4
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 6.1e-53 212.2 367 39.2
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.4e-52 211.1 341 39.9
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 7.5e-51 205.3 357 41.7
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.4e-49 200.3 346 41.3
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 9.2e-49 198.4 339 38.1
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.2e-48 198.0 382 39.0
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.0e-48 197.2 378 40.2
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 7.8e-48 195.3 339 40.4
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.7e-47 194.1 346 39.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.3e-47 193.7 369 39.6
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.5e-46 191.0 341 37.5
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.9e-46 190.7 391 37.3
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.3e-46 189.9 349 38.1
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.3e-46 189.9 350 40.6
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 5.6e-46 189.1 346 40.2
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 9.5e-46 188.3 346 38.2
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.1e-45 187.2 349 39.3
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 6.2e-45 185.7 350 38.9
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 8.0e-45 185.3 346 37.3
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 8.0e-45 185.3 349 37.5
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.4e-44 184.5 349 37.5
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 3.1e-44 183.3 340 36.5
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 3.1e-44 183.3 348 39.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 3.1e-44 183.3 348 39.1
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 3.1e-44 183.3 348 39.1
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 3.1e-44 183.3 133 69.9
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 8.9e-44 181.8 339 36.6
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 4.4e-43 179.5 377 36.9
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.9e-42 176.8 344 37.5
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.9e-42 176.8 349 40.1
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 3.7e-42 176.4 318 38.4
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 4.1e-41 172.9 339 39.8
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.6e-40 171.0 338 37.9
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.7e-40 170.2 349 37.2
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 4.6e-40 169.5 133 63.9
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 4.6e-40 169.5 356 37.1
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 2.3e-39 167.2 341 39.9
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 3.9e-39 166.4 310 37.4
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.9e-39 166.4 187 51.9
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 6.6e-39 165.6 226 46.5
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 8.6e-39 165.2 315 38.1
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.6e-37 161.0 348 38.5
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.6e-37 161.0 121 69.4
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 8.1e-37 158.7 360 36.9
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 8.1e-37 158.7 360 36.9
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.8e-36 157.5 308 36.4
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.3e-36 157.1 325 35.7
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.3e-36 157.1 244 42.2
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 5.2e-36 156.0 321 36.1
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 9.9e-35 151.8 383 36.0
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.3e-34 151.4 171 50.9
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 6.4e-34 149.1 165 52.7
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 6.4e-34 149.1 165 52.7
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 8.3e-34 148.7 484 30.0
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 5.4e-33 146.0 164 51.8
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 7.1e-33 145.6 470 29.4
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-32 144.8 364 36.0
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-32 144.8 364 36.0
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.7e-31 141.0 364 35.7
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.3e-31 140.6 104 70.2
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.3e-31 140.6 104 70.2
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 2.3e-31 140.6 166 52.4
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 2.3e-31 140.6 166 52.4
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 2.3e-31 140.6 166 52.4
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 3.0e-31 140.2 107 70.1
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 6.6e-31 139.0 167 47.9
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.6e-29 134.4 136 55.1
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.4e-28 131.3 108 64.8
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.8e-28 131.0 112 65.2
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 2.4e-28 130.6 172 48.3
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 4.0e-28 129.8 118 57.6
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 4.4e-27 126.3 350 34.6
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.2e-26 124.0 144 46.5
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.9e-26 122.9 73 84.9
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.9e-26 122.9 114 52.6
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 3.2e-25 120.2 116 57.8
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 5.4e-25 119.4 136 50.0
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.6e-24 117.9 168 46.4
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.7e-24 117.1 110 59.1
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.5e-22 111.3 93 51.6
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.5e-22 111.3 73 74.0
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 4.8e-21 106.3 193 35.2
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.2e-19 101.7 336 28.0
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.5e-19 101.3 341 27.9
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.9e-18 97.1 173 41.0
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 4.2e-17 93.2 201 34.3
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 3.5e-16 90.1 83 49.4
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.0e-15 87.0 292 32.9
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 3.6e-13 80.1 109 48.6
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 1.4e-12 78.2 109 46.8
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 1.8e-12 77.8 109 49.5
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 4.5e-11 73.2 43 83.7
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.1e-09 68.6 108 38.0
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.6e-08 64.7 120 35.0
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 2.7e-08 63.9 69 46.4
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.5e-08 63.5 151 33.1
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 6.7e-07 59.3 71 40.8
SEGI_24660 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 3.3e-06 57.0 70 37.1
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 4.3e-06 56.6 187 25.7
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 5.6e-06 56.2 81 44.4
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 7.4e-06 55.8 98 32.7


User provided reference genes

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